Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004156.1

Orthogroup ID

OG0016435

Physical Location & Seq

Genomic Coordinates Reverse (-)

34072 .. 38367

Gene Structure 4296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004156.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgtttctttgcaagaaacccacagctcaaaacttggaagccctcaaagccaagatggaaattccgagtctccgtccaaaagctaaaggcaaatggtatggcagcatattttgtgacattgactacggatcttggcctttggtgaagtggaccgaagaaccaccgactgaagaaacccgcactggtagtacccgccgaagccccaccagttctacccaattacgacgctttggcgccgggtccttctctagtccgacggcgtatcttttttacccggatatctatacggatggtcggattttagtgcaagccattgatgaggttccgtttccggtcgaagaggagaagaaagcaactccggttgtaaaggttgctgctaagcccagaagagcaaagtctcatagcacctacacgtctggatccaccgacgaggaacaacgtcagccaacacgccgcacctccaagtcaaaatcaagagaagagatgaacccctgcactcaataccggaatccgacctcgcacggacccgataagcacaccgcgatcgcgtcgacctctttgatccactggtcttcctccaccaccaaaagatcagcgtccaggcacctctatctggaattcgaccggccggccaacacagcctgccccgaagtcatctctacttgtgacaagaagccatgtcgccgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

229

Amino Acids

25.87

Weight (kDa)

9.56

Isoelectric Point (pI)

62.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016435)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0348771 RchiOBHm_Chr2g0140831 RchiOBHm_Chr4g0411461 RchiOBHm_Chr5g0081791 RchiOBHm_Chr7g0243031
rosa_multiflora	Rmu_sc0004156.1_g000006 Rmu_sc0022366.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134700 Rroxscaffold_5G00343820
rosa_rugosa	Rorug05G0278500
rosa_samantha	Rh2BG267600 Rh2BG426500 Rh2CG317800 Rh4CG254600 Rh5CG339000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	233, 603
AccI	GTMKAC	1 cut(s)	551
AccII	CGCG	2 cut(s)	542, 548
AciI	CCGC	5 cut(s)	178, 193, 454, 540, 685
AclWI	GGATC	4 cut(s)	136, 414, 427, 556
AcoI	YGGCCR	2 cut(s)	626, 630
AcsI	RAATTY	2 cut(s)	60, 617
AcuI	CTGAAG	1 cut(s)	189
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	1 cut(s)	613
AflIII	ACRYGT	1 cut(s)	411
AjiI	CACGTC	1 cut(s)	414
AjnI	CCWGG	1 cut(s)	599
AluBI	AGCT	2 cut(s)	26, 83
AluI	AGCT	2 cut(s)	26, 83
Alw26I	GTCTC	2 cut(s)	74, 402
AlwI	GGATC	4 cut(s)	136, 414, 427, 556
AoxI	GGCC	3 cut(s)	134, 626, 630
ApeKI	GCWGC	2 cut(s)	102, 374
ApoI	RAATTY	2 cut(s)	60, 617
AsiSI	GCGATCGC	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	3 cut(s)	150, 240, 524
AsuC2I	CCSGG	2 cut(s)	238, 275
AsuHPI	GGTGA	1 cut(s)	154
AvaII	GGWCC	3 cut(s)	150, 240, 524
BamHI	GGATCC	1 cut(s)	419
BanI	GGYRCC	2 cut(s)	233, 603
BbsI	GAAGAC	1 cut(s)	564
BbvI	GCAGC	2 cut(s)	114, 361
BccI	CCATC	2 cut(s)	49, 284
BceAI	ACGGC	1 cut(s)	273
BciT130I	CCWGG	1 cut(s)	601
BcnI	CCSGG	2 cut(s)	238, 275
BcoDI	GTCTC	2 cut(s)	74, 402
BfaI	CTAG	2 cut(s)	249, 688
BfoI	RGCGCY	1 cut(s)	237
BisI	GCNGC	4 cut(s)	103, 375, 454, 685
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	4 cut(s)	104, 376, 455, 686
Bme1390I	CCNGG	3 cut(s)	238, 275, 601
Bme18I	GGWCC	3 cut(s)	150, 240, 524
BmgBI	CACGTC	1 cut(s)	414
BmgT120I	GGNCC	3 cut(s)	150, 240, 524
BmiI	GGNNCC	6 cut(s)	235, 241, 324, 421, 526, 605
BmrFI	CCNGG	3 cut(s)	238, 275, 601
BpiI	GAAGAC	1 cut(s)	564
Bpu1102I	GCTNAGC	1 cut(s)	378
BpuMI	CCSGG	2 cut(s)	238, 275
BsaHI	GRCGYC	1 cut(s)	234
BsaWI	WCCGGW	3 cut(s)	331, 358, 504
Bsc4I	CCNNNNNNNGG	1 cut(s)	613
Bse118I	RCCGGY	2 cut(s)	624, 628
Bse1I	ACTGG	3 cut(s)	187, 207, 572
BseBI	CCWGG	1 cut(s)	601
BseGI	GGATG	1 cut(s)	295
BseLI	CCNNNNNNNGG	1 cut(s)	613
BseNI	ACTGG	3 cut(s)	187, 207, 572
BseRI	GAGGAG	1 cut(s)	356
BseX3I	CGGCCG	1 cut(s)	626
BseXI	GCAGC	2 cut(s)	114, 361
BsgI	GTGCAG	1 cut(s)	478
Bsh1236I	CGCG	2 cut(s)	542, 548
Bsh1285I	CGRYCG	4 cut(s)	336, 546, 625, 629
BshFI	GGCC	3 cut(s)	136, 628, 632
BshNI	GGYRCC	2 cut(s)	233, 603
BsiEI	CGRYCG	4 cut(s)	336, 546, 625, 629
BsiSI	CCGG	7 cut(s)	237, 275, 332, 359, 505, 625, 629
BslI	CCNNNNNNNGG	1 cut(s)	613
BsmAI	GTCTC	2 cut(s)	74, 402
BsnI	GGCC	3 cut(s)	136, 628, 632
Bsp143I	GATC	5 cut(s)	128, 419, 543, 561, 590
Bsp1720I	GCTNAGC	1 cut(s)	378
BspACI	CCGC	5 cut(s)	178, 193, 454, 540, 685
BspANI	GGCC	3 cut(s)	136, 628, 632
BspFNI	CGCG	2 cut(s)	542, 548
BspLI	GGNNCC	6 cut(s)	235, 241, 324, 421, 526, 605
BspPI	GGATC	4 cut(s)	136, 414, 427, 556
BspQI	GCTCTTC	1 cut(s)	382
BspT107I	GGYRCC	2 cut(s)	233, 603
BsrFI	RCCGGY	2 cut(s)	624, 628
BsrI	ACTGG	3 cut(s)	187, 207, 572
BssAI	RCCGGY	2 cut(s)	624, 628
BssMI	GATC	5 cut(s)	128, 419, 543, 561, 590
BssNI	GRCGYC	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	601
Bst6I	CTCTTC	3 cut(s)	333, 382, 474
BstACI	GRCGYC	1 cut(s)	234
BstC8I	GCNNGC	3 cut(s)	309, 630, 643
BstDEI	CTNAG	1 cut(s)	378
BstF5I	GGATG	1 cut(s)	295
BstFNI	CGCG	2 cut(s)	542, 548
BstH2I	RGCGCY	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	5 cut(s)	131, 422, 546, 564, 593
BstMAI	GTCTC	2 cut(s)	74, 402
BstMBI	GATC	5 cut(s)	128, 419, 543, 561, 590
BstMCI	CGRYCG	4 cut(s)	336, 546, 625, 629
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 638
BstNI	CCWGG	1 cut(s)	601
BstSCI	CCNGG	3 cut(s)	236, 273, 599
BstUI	CGCG	2 cut(s)	542, 548
BstV1I	GCAGC	2 cut(s)	114, 361
BstV2I	GAAGAC	1 cut(s)	564
BstX2I	RGATCY	2 cut(s)	128, 419
BstYI	RGATCY	2 cut(s)	128, 419
BstZI	CGGCCG	1 cut(s)	626
BsuRI	GGCC	3 cut(s)	136, 628, 632
BtrI	CACGTC	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	295
BtsIMutI	CAGTG	2 cut(s)	180, 565
Cac8I	GCNNGC	3 cut(s)	309, 630, 643
CfoI	GCGC	1 cut(s)	236
Cfr10I	RCCGGY	2 cut(s)	624, 628
Cfr13I	GGNCC	3 cut(s)	150, 240, 524
CseI	GACGC	3 cut(s)	234, 537, 585
Csp6I	GTAC	1 cut(s)	189
CviAII	CATG	1 cut(s)	678
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	1 cut(s)	378
DinI	GGCGCC	1 cut(s)	235
DpnI	GATC	5 cut(s)	130, 421, 545, 563, 592
DpnII	GATC	5 cut(s)	128, 419, 543, 561, 590
EaeI	YGGCCR	2 cut(s)	626, 630
EagI	CGGCCG	1 cut(s)	626
Eam1104I	CTCTTC	3 cut(s)	333, 382, 474
EarI	CTCTTC	3 cut(s)	333, 382, 474
EclXI	CGGCCG	1 cut(s)	626
Eco32I	GATATC	1 cut(s)	280
Eco47I	GGWCC	3 cut(s)	150, 240, 524
Eco52I	CGGCCG	1 cut(s)	626
Eco57I	CTGAAG	1 cut(s)	189
EcoO109I	RGGNCCY	1 cut(s)	240
EcoRI	GAATTC	1 cut(s)	617
EcoRII	CCWGG	1 cut(s)	599
EcoRV	GATATC	1 cut(s)	280
EgeI	GGCGCC	1 cut(s)	235
EheI	GGCGCC	1 cut(s)	235
FaeI	CATG	1 cut(s)	681
FaiI	YATR	5 cut(s)	99, 107, 285, 402, 679
FatI	CATG	1 cut(s)	677
FauI	CCCGC	2 cut(s)	185, 200
FblI	GTMKAC	1 cut(s)	551
Fnu4HI	GCNGC	4 cut(s)	103, 375, 454, 685
FokI	GGATG	1 cut(s)	302
FseI	GGCCGGCC	1 cut(s)	632
Fsp4HI	GCNGC	4 cut(s)	103, 375, 454, 685
FspBI	CTAG	2 cut(s)	249, 688
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	4 cut(s)	103, 375, 454, 685
HaeII	RGCGCY	1 cut(s)	237
HaeIII	GGCC	3 cut(s)	136, 628, 632
HapII	CCGG	7 cut(s)	237, 275, 332, 359, 505, 625, 629
HgaI	GACGC	3 cut(s)	234, 537, 585
HhaI	GCGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	1 cut(s)	681
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HincII	GTYRAC	1 cut(s)	552
HindII	GTYRAC	1 cut(s)	552
HinfI	GANTC	2 cut(s)	67, 508
HpaII	CCGG	7 cut(s)	237, 275, 332, 359, 505, 625, 629
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	2 cut(s)	150, 552
Hpy188I	TCNGA	4 cut(s)	66, 255, 297, 513
Hpy188III	TCNNGA	3 cut(s)	417, 474, 614
Hpy8I	GTNNAC	2 cut(s)	150, 552
Hpy99I	CGWCG	4 cut(s)	228, 259, 431, 553
HpyAV	CCTTC	1 cut(s)	253
HpyCH4IV	ACGT	2 cut(s)	413, 439
HpyCH4V	TGCA	3 cut(s)	12, 307, 495
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 638
HpyF3I	CTNAG	1 cut(s)	378
HpySE526I	ACGT	2 cut(s)	413, 439
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	681
HspAI	GCGC	1 cut(s)	234
KasI	GGCGCC	1 cut(s)	233
KroI	GCCGGC	1 cut(s)	628
KroNI	GCCGGC	1 cut(s)	630
Kzo9I	GATC	5 cut(s)	128, 419, 543, 561, 590
LguI	GCTCTTC	1 cut(s)	382
Lsp1109I	GCAGC	2 cut(s)	114, 361
MaeI	CTAG	2 cut(s)	249, 688
MaeII	ACGT	2 cut(s)	413, 439
MaeIII	GTNAC	2 cut(s)	113, 665
MalI	GATC	5 cut(s)	130, 421, 545, 563, 592
MboI	GATC	5 cut(s)	128, 419, 543, 561, 590
MboII	GAAGA	7 cut(s)	167, 182, 350, 358, 399, 491, 564
MflI	RGATCY	2 cut(s)	128, 419
MluCI	AATT	3 cut(s)	60, 218, 617
Mly113I	GGCGCC	1 cut(s)	234
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	3 cut(s)	275, 278, 536
MnlI	CCTC	9 cut(s)	53, 313, 334, 424, 469, 526, 565, 586, 617
MroNI	GCCGGC	1 cut(s)	628
MspI	CCGG	7 cut(s)	237, 275, 332, 359, 505, 625, 629
MspR9I	CCNGG	3 cut(s)	238, 275, 601
MvaI	CCWGG	1 cut(s)	601
MvnI	CGCG	2 cut(s)	542, 548
MwoI	GCNNNNNNNGC	2 cut(s)	47, 638
NaeI	GCCGGC	1 cut(s)	630
NarI	GGCGCC	1 cut(s)	234
NciI	CCSGG	2 cut(s)	238, 275
NdeII	GATC	5 cut(s)	128, 419, 543, 561, 590
NgoMIV	GCCGGC	1 cut(s)	628
NlaIII	CATG	1 cut(s)	681
NlaIV	GGNNCC	6 cut(s)	235, 241, 324, 421, 526, 605
NmuCI	GTSAC	2 cut(s)	113, 665
PciSI	GCTCTTC	1 cut(s)	382
PdiI	GCCGGC	1 cut(s)	630
PfeI	GAWTC	1 cut(s)	508
PkrI	GCNGC	4 cut(s)	104, 376, 455, 686
Ple19I	CGATCG	1 cut(s)	546
PleI	GAGTC	1 cut(s)	75
PluTI	GGCGCC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	75
PpuMI	RGGWCCY	1 cut(s)	240
Psp5II	RGGWCCY	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	599
PspGI	CCWGG	1 cut(s)	599
PspN4I	GGNNCC	6 cut(s)	235, 241, 324, 421, 526, 605
PspPI	GGNCC	3 cut(s)	150, 240, 524
PspPPI	RGGWCCY	1 cut(s)	240
PsuI	RGATCY	2 cut(s)	128, 419
PvuI	CGATCG	1 cut(s)	546
RgaI	GCGATCGC	1 cut(s)	546
RigI	GGCCGGCC	1 cut(s)	632
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
SalI	GTCGAC	1 cut(s)	550
SapI	GCTCTTC	1 cut(s)	382
SatI	GCNGC	4 cut(s)	103, 375, 454, 685
Sau3AI	GATC	5 cut(s)	128, 419, 543, 561, 590
Sau96I	GGNCC	3 cut(s)	150, 240, 524
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	3 cut(s)	238, 275, 601
SfaAI	GCGATCGC	1 cut(s)	546
SfoI	GGCGCC	1 cut(s)	235
SgfI	GCGATCGC	1 cut(s)	546
SinI	GGWCC	3 cut(s)	150, 240, 524
Sse9I	AATT	3 cut(s)	60, 218, 617
SsiI	CCGC	5 cut(s)	178, 193, 454, 540, 685
SspDI	GGCGCC	1 cut(s)	233
SspMI	CTAG	2 cut(s)	249, 688
StyD4I	CCNGG	3 cut(s)	236, 273, 599
TaiI	ACGT	2 cut(s)	416, 442
TaqI	TCGA	3 cut(s)	336, 551, 621
TaqII	GACCGA	1 cut(s)	167
TasI	AATT	3 cut(s)	60, 218, 617
TauI	GCSGC	2 cut(s)	456, 687
TfiI	GAWTC	1 cut(s)	508
TscAI	CASTG	2 cut(s)	187, 572
TseFI	GTSAC	2 cut(s)	113, 665
TseI	GCWGC	2 cut(s)	102, 374
Tsp45I	GTSAC	2 cut(s)	113, 665
TspDTI	ATGAA	1 cut(s)	500
TspGWI	ACGGA	5 cut(s)	62, 141, 302, 315, 537
TspRI	CASTG	2 cut(s)	187, 572
VpaK11BI	GGWCC	3 cut(s)	150, 240, 524
XapI	RAATTY	2 cut(s)	60, 617
XmiI	GTMKAC	1 cut(s)	551
XspI	CTAG	2 cut(s)	249, 688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.