iq-domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0348771 RchiOBHm_Chr2g0140831 RchiOBHm_Chr4g0411461 RchiOBHm_Chr5g0081791 RchiOBHm_Chr7g0243031 |
| rosa_multiflora | Rmu_sc0004156.1_g000006 Rmu_sc0022366.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00134700 Rroxscaffold_5G00343820 |
| rosa_rugosa | Rorug05G0278500 |
| rosa_samantha | Rh2BG267600 Rh2BG426500 Rh2CG317800 Rh4CG254600 Rh5CG339000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 625 |
| AciI | CCGC | 1 cut(s) | 625 |
| AclWI | GGATC | 1 cut(s) | 32 |
| AcsI | RAATTY | 3 cut(s) | 176, 400, 599 |
| AfaI | GTAC | 3 cut(s) | 95, 724, 757 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 698 |
| AgeI | ACCGGT | 1 cut(s) | 13 |
| AgsI | TTSAA | 2 cut(s) | 103, 379 |
| AjnI | CCWGG | 1 cut(s) | 158 |
| AluBI | AGCT | 8 cut(s) | 167, 263, 338, 520, 541, 574, 583, 698 |
| AluI | AGCT | 8 cut(s) | 167, 263, 338, 520, 541, 574, 583, 698 |
| Alw26I | GTCTC | 1 cut(s) | 281 |
| AlwI | GGATC | 1 cut(s) | 32 |
| AoxI | GGCC | 2 cut(s) | 444, 653 |
| ApeKI | GCWGC | 4 cut(s) | 155, 164, 338, 566 |
| ApoI | RAATTY | 3 cut(s) | 176, 400, 599 |
| AsiGI | ACCGGT | 1 cut(s) | 13 |
| AspS9I | GGNCC | 1 cut(s) | 653 |
| AsuHPI | GGTGA | 2 cut(s) | 3, 290 |
| BbvI | GCAGC | 4 cut(s) | 142, 176, 325, 578 |
| BccI | CCATC | 1 cut(s) | 644 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 164, 198 |
| BciT130I | CCWGG | 1 cut(s) | 160 |
| BcoDI | GTCTC | 1 cut(s) | 281 |
| BfaI | CTAG | 3 cut(s) | 542, 584, 720 |
| BfmI | CTRYAG | 2 cut(s) | 222, 524 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 661 |
| BisI | GCNGC | 4 cut(s) | 156, 165, 339, 567 |
| BlsI | GCNGC | 4 cut(s) | 157, 166, 340, 568 |
| BmcAI | AGTACT | 1 cut(s) | 724 |
| Bme1390I | CCNGG | 1 cut(s) | 160 |
| BmgT120I | GGNCC | 1 cut(s) | 653 |
| BmrFI | CCNGG | 1 cut(s) | 160 |
| BmsI | GCATC | 1 cut(s) | 486 |
| BsaJI | CCNNGG | 2 cut(s) | 159, 348 |
| BsaWI | WCCGGW | 1 cut(s) | 13 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 715, 745 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 698 |
| Bse118I | RCCGGY | 1 cut(s) | 13 |
| BseBI | CCWGG | 1 cut(s) | 160 |
| BseDI | CCNNGG | 2 cut(s) | 159, 348 |
| BseGI | GGATG | 3 cut(s) | 53, 613, 655 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 698 |
| BseRI | GAGGAG | 1 cut(s) | 720 |
| BseXI | GCAGC | 4 cut(s) | 142, 176, 325, 578 |
| BshFI | GGCC | 2 cut(s) | 446, 655 |
| BshTI | ACCGGT | 1 cut(s) | 13 |
| BsiSI | CCGG | 1 cut(s) | 14 |
| BslFI | GGGAC | 1 cut(s) | 464 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 698 |
| BsmAI | GTCTC | 1 cut(s) | 281 |
| BsmFI | GGGAC | 1 cut(s) | 464 |
| BsnI | GGCC | 2 cut(s) | 446, 655 |
| Bsp1407I | TGTACA | 1 cut(s) | 93 |
| Bsp143I | GATC | 3 cut(s) | 24, 440, 471 |
| BspACI | CCGC | 1 cut(s) | 625 |
| BspANI | GGCC | 2 cut(s) | 446, 655 |
| BspHI | TCATGA | 2 cut(s) | 205, 558 |
| BspPI | GGATC | 1 cut(s) | 32 |
| BsrBI | CCGCTC | 1 cut(s) | 625 |
| BsrFI | RCCGGY | 1 cut(s) | 13 |
| BsrGI | TGTACA | 1 cut(s) | 93 |
| BssAI | RCCGGY | 1 cut(s) | 13 |
| BssECI | CCNNGG | 2 cut(s) | 159, 348 |
| BssMI | GATC | 3 cut(s) | 24, 440, 471 |
| Bst2UI | CCWGG | 1 cut(s) | 160 |
| Bst4CI | ACNGT | 1 cut(s) | 34 |
| Bst6I | CTCTTC | 1 cut(s) | 73 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 575 |
| BstAUI | TGTACA | 1 cut(s) | 93 |
| BstC8I | GCNNGC | 1 cut(s) | 576 |
| BstF5I | GGATG | 3 cut(s) | 53, 613, 655 |
| BstKTI | GATC | 3 cut(s) | 27, 443, 474 |
| BstMAI | GTCTC | 1 cut(s) | 281 |
| BstMBI | GATC | 3 cut(s) | 24, 440, 471 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 161, 164, 269, 575, 580, 661 |
| BstNI | CCWGG | 1 cut(s) | 160 |
| BstSCI | CCNGG | 1 cut(s) | 158 |
| BstSFI | CTRYAG | 2 cut(s) | 222, 524 |
| BstV1I | GCAGC | 4 cut(s) | 142, 176, 325, 578 |
| BsuRI | GGCC | 2 cut(s) | 446, 655 |
| BtsCI | GGATG | 3 cut(s) | 53, 613, 655 |
| Cac8I | GCNNGC | 1 cut(s) | 576 |
| CciI | TCATGA | 2 cut(s) | 205, 558 |
| Cfr10I | RCCGGY | 1 cut(s) | 13 |
| Cfr13I | GGNCC | 1 cut(s) | 653 |
| Csp6I | GTAC | 3 cut(s) | 94, 723, 756 |
| CspAI | ACCGGT | 1 cut(s) | 13 |
| CviAII | CATG | 4 cut(s) | 206, 469, 559, 667 |
| CviQI | GTAC | 3 cut(s) | 94, 723, 756 |
| DpnI | GATC | 3 cut(s) | 26, 442, 473 |
| DpnII | GATC | 3 cut(s) | 24, 440, 471 |
| Eam1104I | CTCTTC | 1 cut(s) | 73 |
| EarI | CTCTTC | 1 cut(s) | 73 |
| EcoRII | CCWGG | 1 cut(s) | 158 |
| EcoT22I | ATGCAT | 1 cut(s) | 115 |
| FaeI | CATG | 4 cut(s) | 209, 472, 562, 670 |
| FaqI | GGGAC | 1 cut(s) | 464 |
| FatI | CATG | 4 cut(s) | 205, 468, 558, 666 |
| FauI | CCCGC | 1 cut(s) | 618 |
| FauNDI | CATATG | 1 cut(s) | 760 |
| Fnu4HI | GCNGC | 4 cut(s) | 156, 165, 339, 567 |
| FokI | GGATG | 3 cut(s) | 40, 620, 662 |
| Fsp4HI | GCNGC | 4 cut(s) | 156, 165, 339, 567 |
| FspBI | CTAG | 3 cut(s) | 542, 584, 720 |
| GluI | GCNGC | 4 cut(s) | 156, 165, 339, 567 |
| HaeIII | GGCC | 2 cut(s) | 446, 655 |
| HapII | CCGG | 1 cut(s) | 14 |
| Hin1II | CATG | 4 cut(s) | 209, 472, 562, 670 |
| HindIII | AAGCTT | 1 cut(s) | 572 |
| HinfI | GANTC | 6 cut(s) | 188, 307, 406, 545, 587, 716 |
| HpaII | CCGG | 1 cut(s) | 14 |
| HphI | GGTGA | 2 cut(s) | 3, 290 |
| Hpy188III | TCNNGA | 5 cut(s) | 28, 206, 481, 559, 605 |
| HpyCH4III | ACNGT | 1 cut(s) | 34 |
| HpyCH4V | TGCA | 6 cut(s) | 113, 185, 272, 341, 499, 578 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 161, 164, 269, 575, 580, 661 |
| Hsp92II | CATG | 4 cut(s) | 209, 472, 562, 670 |
| Kzo9I | GATC | 3 cut(s) | 24, 440, 471 |
| LmnI | GCTCC | 2 cut(s) | 268, 525 |
| LpnPI | CCDG | 6 cut(s) | 27, 145, 172, 590, 684, 747 |
| Lsp1109I | GCAGC | 4 cut(s) | 142, 176, 325, 578 |
| LweI | GCATC | 1 cut(s) | 486 |
| MaeI | CTAG | 3 cut(s) | 542, 584, 720 |
| MaeIII | GTNAC | 1 cut(s) | 85 |
| MalI | GATC | 3 cut(s) | 26, 442, 473 |
| MbiI | CCGCTC | 1 cut(s) | 625 |
| MboI | GATC | 3 cut(s) | 24, 440, 471 |
| MboII | GAAGA | 2 cut(s) | 58, 90 |
| MluCI | AATT | 4 cut(s) | 176, 245, 400, 599 |
| MlyI | GAGTC | 3 cut(s) | 400, 539, 581 |
| Mph1103I | ATGCAT | 1 cut(s) | 115 |
| MseI | TTAA | 4 cut(s) | 18, 503, 593, 793 |
| MslI | CAYNNNNRTG | 1 cut(s) | 771 |
| MspI | CCGG | 1 cut(s) | 14 |
| MspR9I | CCNGG | 1 cut(s) | 160 |
| MvaI | CCWGG | 1 cut(s) | 160 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 161, 164, 269, 575, 580, 661 |
| NdeI | CATATG | 1 cut(s) | 760 |
| NdeII | GATC | 3 cut(s) | 24, 440, 471 |
| NlaIII | CATG | 4 cut(s) | 209, 472, 562, 670 |
| NsiI | ATGCAT | 1 cut(s) | 115 |
| PagI | TCATGA | 2 cut(s) | 205, 558 |
| PfeI | GAWTC | 3 cut(s) | 188, 307, 716 |
| PinAI | ACCGGT | 1 cut(s) | 13 |
| PkrI | GCNGC | 4 cut(s) | 157, 166, 340, 568 |
| PleI | GAGTC | 3 cut(s) | 400, 539, 581 |
| PpsI | GAGTC | 3 cut(s) | 400, 539, 581 |
| Psp6I | CCWGG | 1 cut(s) | 158 |
| PspGI | CCWGG | 1 cut(s) | 158 |
| PspPI | GGNCC | 1 cut(s) | 653 |
| RsaI | GTAC | 3 cut(s) | 95, 724, 757 |
| RsaNI | GTAC | 3 cut(s) | 94, 723, 756 |
| RseI | CAYNNNNRTG | 1 cut(s) | 771 |
| SaqAI | TTAA | 4 cut(s) | 18, 503, 593, 793 |
| SatI | GCNGC | 4 cut(s) | 156, 165, 339, 567 |
| Sau3AI | GATC | 3 cut(s) | 24, 440, 471 |
| Sau96I | GGNCC | 1 cut(s) | 653 |
| ScaI | AGTACT | 1 cut(s) | 724 |
| SchI | GAGTC | 3 cut(s) | 400, 539, 581 |
| ScrFI | CCNGG | 1 cut(s) | 160 |
| SfaNI | GCATC | 1 cut(s) | 486 |
| SfcI | CTRYAG | 2 cut(s) | 222, 524 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 771 |
| Sse9I | AATT | 4 cut(s) | 176, 245, 400, 599 |
| SsiI | CCGC | 1 cut(s) | 625 |
| SspMI | CTAG | 3 cut(s) | 542, 584, 720 |
| StyD4I | CCNGG | 1 cut(s) | 158 |
| TaaI | ACNGT | 1 cut(s) | 34 |
| TaqI | TCGA | 1 cut(s) | 366 |
| TasI | AATT | 4 cut(s) | 176, 245, 400, 599 |
| TatI | WGTACW | 3 cut(s) | 93, 722, 755 |
| TfiI | GAWTC | 3 cut(s) | 188, 307, 716 |
| Tru1I | TTAA | 4 cut(s) | 18, 503, 593, 793 |
| Tru9I | TTAA | 4 cut(s) | 18, 503, 593, 793 |
| TseI | GCWGC | 4 cut(s) | 155, 164, 338, 566 |
| TspDTI | ATGAA | 3 cut(s) | 222, 624, 755 |
| XapI | RAATTY | 3 cut(s) | 176, 400, 599 |
| XspI | CTAG | 3 cut(s) | 542, 584, 720 |
| ZrmI | AGTACT | 1 cut(s) | 724 |
| Zsp2I | ATGCAT | 1 cut(s) | 115 |