Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022366.1

Orthogroup ID

OG0016435

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 671

Gene Structure 671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022366.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 247 bp

agaaccaccgactgaagaaacccgcactggcagtacccgccgaagccccactagttctacccaattacgacgctttggcgctgggtccttctctagtccgacggcgtatcttttttacccggatatctatacggatggtcggattttagtgcaagccattgatgaggttccgtttccggtcgaagaggagaagaaagcaactccggttgtaaaggttgctgctaagcccagaagaggtatgttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

81

Amino Acids

8.99

Weight (kDa)

9.23

Isoelectric Point (pI)

84.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016435)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0348771 RchiOBHm_Chr2g0140831 RchiOBHm_Chr4g0411461 RchiOBHm_Chr5g0081791 RchiOBHm_Chr7g0243031
rosa_multiflora	Rmu_sc0004156.1_g000006 Rmu_sc0022366.1_g000001
rosa_roxburghii	Rroxscaffold_2G00134700 Rroxscaffold_5G00343820
rosa_rugosa	Rorug05G0278500
rosa_samantha	Rh2BG267600 Rh2BG426500 Rh2CG317800 Rh4CG254600 Rh5CG339000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AciI	CCGC	2 cut(s)	23, 38
AcuI	CTGAAG	1 cut(s)	34
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	234
AhlI	ACTAGT	1 cut(s)	51
ApeKI	GCWGC	1 cut(s)	219
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	85
AsuC2I	CCSGG	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	85
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	1 cut(s)	129
BceAI	ACGGC	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	120
BcuI	ACTAGT	1 cut(s)	51
BfaI	CTAG	2 cut(s)	52, 94
BfoI	RGCGCY	1 cut(s)	82
BisI	GCNGC	1 cut(s)	220
BlpI	GCTNAGC	1 cut(s)	223
BlsI	GCNGC	1 cut(s)	221
Bme1390I	CCNGG	1 cut(s)	120
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	86, 169
BmrFI	CCNGG	1 cut(s)	120
Bpu1102I	GCTNAGC	1 cut(s)	223
BpuMI	CCSGG	1 cut(s)	120
BsaWI	WCCGGW	2 cut(s)	176, 203
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	32
BseGI	GGATG	1 cut(s)	140
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	201
BseXI	GCAGC	1 cut(s)	206
BseYI	CCCAGC	1 cut(s)	81
Bsh1285I	CGRYCG	1 cut(s)	181
BsiEI	CGRYCG	1 cut(s)	181
BsiSI	CCGG	3 cut(s)	120, 177, 204
BslI	CCNNNNNNNGG	1 cut(s)	234
Bsp1720I	GCTNAGC	1 cut(s)	223
BspACI	CCGC	2 cut(s)	23, 38
BspLI	GGNNCC	2 cut(s)	86, 169
BsrI	ACTGG	1 cut(s)	32
Bst6I	CTCTTC	2 cut(s)	178, 227
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	140
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	81
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstSCI	CCNGG	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	154
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	34
CviJI	RGCY	3 cut(s)	46, 156, 227
CviKI_1	RGCY	3 cut(s)	46, 156, 227
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	178, 227
EarI	CTCTTC	2 cut(s)	178, 227
Eco32I	GATATC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRV	GATATC	1 cut(s)	125
FaiI	YATR	3 cut(s)	130, 240, 245
FauI	CCCGC	2 cut(s)	30, 45
Fnu4HI	GCNGC	1 cut(s)	220
FokI	GGATG	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	220
FspBI	CTAG	2 cut(s)	52, 94
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	1 cut(s)	220
GsaI	CCCAGC	1 cut(s)	85
HaeII	RGCGCY	1 cut(s)	82
HapII	CCGG	3 cut(s)	120, 177, 204
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	1 cut(s)	81
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HpaII	CCGG	3 cut(s)	120, 177, 204
Hpy188I	TCNGA	2 cut(s)	100, 142
Hpy99I	CGWCG	2 cut(s)	73, 104
HpyAV	CCTTC	1 cut(s)	98
HpyCH4V	TGCA	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	1 cut(s)	223
HspAI	GCGC	1 cut(s)	79
LpnPI	CCDG	6 cut(s)	13, 67, 133, 190, 217, 242
Lsp1109I	GCAGC	1 cut(s)	206
MaeI	CTAG	2 cut(s)	52, 94
MboII	GAAGA	4 cut(s)	27, 195, 203, 244
MluCI	AATT	1 cut(s)	63
MmeI	TCCRAC	2 cut(s)	120, 123
MnlI	CCTC	3 cut(s)	158, 179, 228
MspI	CCGG	3 cut(s)	120, 177, 204
MspR9I	CCNGG	1 cut(s)	120
MwoI	GCNNNNNNNGC	1 cut(s)	37
NciI	CCSGG	1 cut(s)	120
NlaIV	GGNNCC	2 cut(s)	86, 169
PkrI	GCNGC	1 cut(s)	221
PpuMI	RGGWCCY	1 cut(s)	85
PsiI	TTATAA	1 cut(s)	245
Psp5II	RGGWCCY	1 cut(s)	85
PspFI	CCCAGC	1 cut(s)	81
PspN4I	GGNNCC	2 cut(s)	86, 169
PspPI	GGNCC	1 cut(s)	85
PspPPI	RGGWCCY	1 cut(s)	85
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SatI	GCNGC	1 cut(s)	220
Sau96I	GGNCC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	120
SetI	ASST	3 cut(s)	169, 217, 239
SinI	GGWCC	1 cut(s)	85
SpeI	ACTAGT	1 cut(s)	51
Sse9I	AATT	1 cut(s)	63
SsiI	CCGC	2 cut(s)	23, 38
SspMI	CTAG	2 cut(s)	52, 94
StyD4I	CCNGG	1 cut(s)	118
TaqI	TCGA	1 cut(s)	181
TasI	AATT	1 cut(s)	63
TscAI	CASTG	1 cut(s)	32
TseI	GCWGC	1 cut(s)	219
TspGWI	ACGGA	2 cut(s)	147, 160
TspRI	CASTG	1 cut(s)	32
VpaK11BI	GGWCC	1 cut(s)	85
XspI	CTAG	2 cut(s)	52, 94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.