RchiOBHm_Chr1g0371261

Leucine-rich repeat receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
60556840 .. 60558583
1744 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59535

Sequence Viewer

Length: 1278 bp
ATGTTCTCAATCCAGTGGACAATGAAGCTATGTGGCTACAGTGCTTTAACTTCATGCCCTTCTGAAGCACCTTCTCAAAGTGGTGTAGCTCCAGCACCTGAGGTAGCAAAACGTCGCCGACGCAGACTTAGTACCAAAGACAGAATTCTCATAGCAGCAGCAGTACTTCTAGTAGTTTTGTTTTTACTTTGCTGCATACTACTTTGCTGTTTGATCCGAAAAAGAGCTGCATCAAAATCAAAGGATGGTGGGGTGGCTGGGGCAGGTGCTGCTAGAACCGAAAAGGGGGTTCCGGTTGGTGGGGTTGAAATCGAATCTGGTGGAGAGGCAGGAGGAAAACTAGTGCATTTTGATGGGCCGATGGCTTTTACAGCAGATGATCTTTTGTGTGCAACAGCAGAGATTATGGGGAAAAGCACTTTCGGGACAGTCTACAAGGCCACACTGGAGGATGGGAGTGAAGTTGCAGTGAAGAGATTGAGAGAGAAGATTACTAAGAATCAGAGGGAGTTCGAAGCAGAAGTGAATATACTTGGGAAAATCAGACATCCAAACCTGTTGGCTTTGAGGGCTTATTACTTGGGACCTAAAGGAGAAAAGCTTCTGGTTTTCGATTACATGCCTAAAGGAAGTCTTGCTGCATTTCTCCATGCTCGTGGACCTGATACACCGATTGATTGGCCAACAAGAATGAGAATCGCAAAGGGCATGGCGCGAGGGCTGTCCTATCTCCACAGCAATGAGAACATCATACATGGGAACCTTACATCCAGCAATGTCCTACTTGATGAGCAAACTGATTCTAAGATTGCAGATTATGGTCTCTCTAAGCTTATGACAGCTGCTGCCAATTCCAATGTGATTGCAACAGCTGGGGCACTAGGGTACCGAGCACCCGAGCTCTCAAAGCTCAAGAAGGCCAACACGAAAACTGATGTGTACAGCCTTGGTGTGATCATATTGGAACTCCTAACAGGAAAGTCTCCCGGCGAGCCAATGAACGGCTTGGATTTGCCTCAGTGGGTTGCCTCCATTGTCAAAGAGGAGTGGACGAACGAAGTTTTTGACCTGGAATTGATGAGGGACGCGTCTGTCATCGGGAATGAGTTGCTAAACACATTGAAACTGGCTTTGCACTGTGTTGATCCTTCCCCATCAGCAAGACCGGAAGTTCTGCAGGTTCTGCAGCAACTCGAAGAGATTAGACCCGAAACAGCTGCCAGTTCAGCCGATGATGGAGGTGCAGAACCCTCAATCCCTTCAACAACAAGCGAGTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

425

Amino Acids

45.66

Weight (kDa)

7.01

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 133 - 398 1.1e-42 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 133 - 396 8.8e-40 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 254
AasI GACNNNNNNGTC 1 cut(s) 1091
Acc36I ACCTGC 2 cut(s) 254, 1168
Acc65I GGTACC 1 cut(s) 885
AccB1I GGYRCC 1 cut(s) 885
AccI GTMKAC 1 cut(s) 432
AccII CGCG 2 cut(s) 715, 1088
AclWI GGATC 2 cut(s) 208, 1139
AcoI YGGCCR 1 cut(s) 680
AcsI RAATTY 1 cut(s) 144
AcuI CTGAAG 1 cut(s) 84
AfaI GTAC 4 cut(s) 133, 165, 887, 941
AfiI CCNNNNNNNGG 3 cut(s) 285, 299, 1001
AflIII ACRYGT 1 cut(s) 1086
AgsI TTSAA 3 cut(s) 308, 1123, 1263
AhlI ACTAGT 1 cut(s) 340
AjnI CCWGG 1 cut(s) 1068
AloI GAACNNNNNNTCC 4 cut(s) 752, 784, 1239, 1271
Alw21I GWGCWC 2 cut(s) 895, 903
Alw26I GTCTC 2 cut(s) 827, 987
AlwI GGATC 2 cut(s) 208, 1139
AlwNI CAGNNNCTG 4 cut(s) 98, 269, 845, 1183
Ama87I CYCGRG 1 cut(s) 896
AoxI GGCC 4 cut(s) 356, 438, 680, 918
ApoI RAATTY 1 cut(s) 144
Asp700I GAANNNNTTC 1 cut(s) 600
Asp718I GGTACC 1 cut(s) 885
AspLEI GCGC 1 cut(s) 715
AspS9I GGNCC 3 cut(s) 356, 584, 659
AsuC2I CCSGG 1 cut(s) 987
AsuII TTCGAA 1 cut(s) 513
AvaI CYCGRG 1 cut(s) 896
AvaII GGWCC 2 cut(s) 584, 659
AxyI CCTNAGG 1 cut(s) 99
BaeGI GKGCMC 1 cut(s) 880
BaeI ACNNNNGTAYC 2 cut(s) 869, 902
BalI TGGCCA 1 cut(s) 682
BanI GGYRCC 1 cut(s) 885
BanII GRGCYC 1 cut(s) 903
BarI GAAGNNNNNNTAC 2 cut(s) 513, 545
BauI CACGAG 1 cut(s) 654
Bbv12I GWGCWC 2 cut(s) 895, 903
BccI CCATC 6 cut(s) 239, 347, 355, 446, 1162, 1229
BceAI ACGGC 1 cut(s) 1018
BcgI CGANNNNNNTGC 2 cut(s) 1199, 1233
BciT130I CCWGG 1 cut(s) 1070
BclI TGATCA 1 cut(s) 954
BcnI CCSGG 1 cut(s) 987
BcoDI GTCTC 2 cut(s) 827, 987
BcuI ACTAGT 1 cut(s) 340
BfaI CTAG 4 cut(s) 170, 273, 341, 881
BfmI CTRYAG 3 cut(s) 37, 1175, 1184
BfuAI ACCTGC 2 cut(s) 254, 1168
BmcAI AGTACT 1 cut(s) 165
Bme1390I CCNGG 2 cut(s) 987, 1070
Bme18I GGWCC 2 cut(s) 584, 659
BmeT110I CYCGRG 1 cut(s) 896
BmgT120I GGNCC 3 cut(s) 356, 584, 659
BmiI GGNNCC 4 cut(s) 291, 585, 761, 887
BmrFI CCNGG 2 cut(s) 987, 1070
BmsI GCATC 1 cut(s) 239
BpmI CTGGAG 2 cut(s) 75, 467
Bpu14I TTCGAA 1 cut(s) 513
BpuEI CTTGAG 1 cut(s) 896
BpuMI CCSGG 1 cut(s) 987
BsaI GGTCTC 1 cut(s) 827
BsaJI CCNNGG 1 cut(s) 946
BsaWI WCCGGW 2 cut(s) 292, 1165
Bsc4I CCNNNNNNNGG 3 cut(s) 285, 299, 1001
Bse1I ACTGG 4 cut(s) 13, 450, 1131, 1221
Bse21I CCTNAGG 1 cut(s) 99
Bse3DI GCAATG 2 cut(s) 745, 781
BseBI CCWGG 1 cut(s) 1070
BseDI CCNNGG 1 cut(s) 946
BseGI GGATG 4 cut(s) 250, 457, 547, 767
BseLI CCNNNNNNNGG 3 cut(s) 285, 299, 1001
BseMI GCAATG 2 cut(s) 745, 781
BseMII CTCAG 2 cut(s) 90, 1031
BseNI ACTGG 4 cut(s) 13, 450, 1131, 1221
BseRI GAGGAG 1 cut(s) 1058
BseSI GKGCMC 1 cut(s) 880
BseYI CCCAGC 2 cut(s) 257, 872
BsgI GTGCAG 1 cut(s) 1263
Bsh1236I CGCG 2 cut(s) 715, 1088
BshFI GGCC 4 cut(s) 358, 440, 682, 920
BshNI GGYRCC 1 cut(s) 885
BsiHKAI GWGCWC 2 cut(s) 895, 903
BsiHKCI CYCGRG 1 cut(s) 896
BsiSI CCGG 3 cut(s) 293, 987, 1166
BslFI GGGAC 3 cut(s) 439, 597, 1097
BslI CCNNNNNNNGG 3 cut(s) 285, 299, 1001
BsmAI GTCTC 2 cut(s) 827, 987
BsmFI GGGAC 3 cut(s) 439, 597, 1097
BsnI GGCC 4 cut(s) 358, 440, 682, 920
Bso31I GGTCTC 1 cut(s) 827
BsoBI CYCGRG 1 cut(s) 896
Bsp119I TTCGAA 1 cut(s) 513
Bsp1286I GDGCHC 3 cut(s) 880, 895, 903
Bsp1407I TGTACA 1 cut(s) 939
Bsp143I GATC 4 cut(s) 213, 379, 954, 1144
BspANI GGCC 4 cut(s) 358, 440, 682, 920
BspCNI CTCAG 2 cut(s) 91, 1030
BspFNI CGCG 2 cut(s) 715, 1088
BspLI GGNNCC 4 cut(s) 291, 585, 761, 887
BspMAI CTGCAG 2 cut(s) 1179, 1188
BspMI ACCTGC 2 cut(s) 254, 1168
BspPI GGATC 2 cut(s) 208, 1139
BspT104I TTCGAA 1 cut(s) 513
BspT107I GGYRCC 1 cut(s) 885
BspTNI GGTCTC 1 cut(s) 827
BsrDI GCAATG 2 cut(s) 745, 781
BsrGI TGTACA 1 cut(s) 939
BsrI ACTGG 4 cut(s) 13, 450, 1131, 1221
BssECI CCNNGG 1 cut(s) 946
BssMI GATC 4 cut(s) 213, 379, 954, 1144
BssSI CACGAG 1 cut(s) 654
BssT1I CCWWGG 1 cut(s) 946
Bst2BI CACGAG 1 cut(s) 654
Bst2UI CCWGG 1 cut(s) 1070
Bst4CI ACNGT 3 cut(s) 41, 430, 1139
Bst6I CTCTTC 2 cut(s) 467, 1191
BstAPI GCANNNNNTGC 2 cut(s) 269, 1183
BstAUI TGTACA 1 cut(s) 939
BstBI TTCGAA 1 cut(s) 513
BstC8I GCNNGC 1 cut(s) 992
BstDEI CTNAG 6 cut(s) 99, 128, 495, 804, 828, 1017
BstF5I GGATG 4 cut(s) 250, 457, 547, 767
BstFNI CGCG 2 cut(s) 715, 1088
BstHHI GCGC 1 cut(s) 715
BstKTI GATC 4 cut(s) 216, 382, 957, 1147
BstMAI GTCTC 2 cut(s) 827, 987
BstMBI GATC 4 cut(s) 213, 379, 954, 1144
BstMWI GCNNNNNNNGC 6 cut(s) 269, 371, 569, 907, 1183, 1226
BstNI CCWGG 1 cut(s) 1070
BstNSI RCATGY 1 cut(s) 622
BstSCI CCNGG 2 cut(s) 985, 1068
BstSFI CTRYAG 3 cut(s) 37, 1175, 1184
BstSLI GKGCMC 1 cut(s) 880
BstUI CGCG 2 cut(s) 715, 1088
BstXI CCANNNNNNTGG 1 cut(s) 656
Bsu36I CCTNAGG 1 cut(s) 99
BsuRI GGCC 4 cut(s) 358, 440, 682, 920
BtsCI GGATG 4 cut(s) 250, 457, 547, 767
BtsI GCAGTG 1 cut(s) 474
BtsIMutI CAGTG 6 cut(s) 20, 46, 443, 474, 1025, 1135
BveI ACCTGC 2 cut(s) 254, 1168
Cac8I GCNNGC 1 cut(s) 992
CaiI CAGNNNCTG 4 cut(s) 98, 269, 845, 1183
CfoI GCGC 1 cut(s) 715
Cfr13I GGNCC 3 cut(s) 356, 584, 659
CseI GACGC 3 cut(s) 129, 1077, 1094
Csp6I GTAC 4 cut(s) 132, 164, 886, 940
CviAII CATG 5 cut(s) 54, 619, 650, 709, 755
CviQI GTAC 4 cut(s) 132, 164, 886, 940
DdeI CTNAG 6 cut(s) 99, 128, 495, 804, 828, 1017
DpnI GATC 4 cut(s) 215, 381, 956, 1146
DpnII GATC 4 cut(s) 213, 379, 954, 1144
DrdI GACNNNNNNGTC 1 cut(s) 1091
DseDI GACNNNNNNGTC 1 cut(s) 1091
EaeI YGGCCR 1 cut(s) 680
Eam1104I CTCTTC 2 cut(s) 467, 1191
EarI CTCTTC 2 cut(s) 467, 1191
Ecl136II GAGCTC 1 cut(s) 901
Eco130I CCWWGG 1 cut(s) 946
Eco24I GRGCYC 1 cut(s) 903
Eco31I GGTCTC 1 cut(s) 827
Eco47I GGWCC 2 cut(s) 584, 659
Eco53kI GAGCTC 1 cut(s) 901
Eco57I CTGAAG 1 cut(s) 84
Eco81I CCTNAGG 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 896
EcoICRI GAGCTC 1 cut(s) 901
EcoO109I RGGNCCY 1 cut(s) 584
EcoRI GAATTC 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 1068
EcoT14I CCWWGG 1 cut(s) 946
EcoT38I GRGCYC 1 cut(s) 903
ErhI CCWWGG 1 cut(s) 946
FaeI CATG 5 cut(s) 57, 622, 653, 712, 758
FalI AAGNNNNNCTT 2 cut(s) 618, 650
FaqI GGGAC 3 cut(s) 439, 597, 1097
FatI CATG 5 cut(s) 53, 618, 649, 708, 754
FbaI TGATCA 1 cut(s) 954
FblI GTMKAC 1 cut(s) 432
FokI GGATG 4 cut(s) 257, 464, 534, 754
FriOI GRGCYC 1 cut(s) 903
FspBI CTAG 4 cut(s) 170, 273, 341, 881
GlaI GCGC 1 cut(s) 714
GsaI CCCAGC 2 cut(s) 261, 876
GsuI CTGGAG 2 cut(s) 75, 467
HaeIII GGCC 4 cut(s) 358, 440, 682, 920
HapII CCGG 3 cut(s) 293, 987, 1166
HgaI GACGC 3 cut(s) 129, 1077, 1094
HhaI GCGC 1 cut(s) 715
Hin1II CATG 5 cut(s) 57, 622, 653, 712, 758
Hin6I GCGC 1 cut(s) 713
HinP1I GCGC 1 cut(s) 713
HindIII AAGCTT 2 cut(s) 599, 830
HinfI GANTC 4 cut(s) 314, 499, 696, 800
HpaII CCGG 3 cut(s) 293, 987, 1166
Hpy166II GTNNAC 5 cut(s) 18, 433, 659, 940, 1050
Hpy188I TCNGA 4 cut(s) 64, 218, 504, 545
Hpy188III TCNNGA 3 cut(s) 424, 913, 1099
Hpy8I GTNNAC 5 cut(s) 18, 433, 659, 940, 1050
Hpy99I CGWCG 2 cut(s) 117, 123
HpyAV CCTTC 5 cut(s) 69, 81, 910, 1158, 1269
HpyCH4III ACNGT 3 cut(s) 41, 430, 1139
HpyCH4IV ACGT 1 cut(s) 112
HpyF10VI GCNNNNNNNGC 6 cut(s) 269, 371, 569, 907, 1183, 1226
HpyF3I CTNAG 6 cut(s) 99, 128, 495, 804, 828, 1017
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 5 cut(s) 57, 622, 653, 712, 758
HspAI GCGC 1 cut(s) 713
KpnI GGTACC 1 cut(s) 889
Ksp22I TGATCA 1 cut(s) 954
Kzo9I GATC 4 cut(s) 213, 379, 954, 1144
LmnI GCTCC 1 cut(s) 94
LweI GCATC 1 cut(s) 239
MaeI CTAG 4 cut(s) 170, 273, 341, 881
MaeII ACGT 1 cut(s) 112
MalI GATC 4 cut(s) 215, 381, 956, 1146
MboI GATC 4 cut(s) 213, 379, 954, 1144
MboII GAAGA 3 cut(s) 484, 499, 1208
MhlI GDGCHC 3 cut(s) 880, 895, 903
MlsI TGGCCA 1 cut(s) 682
MluCI AATT 3 cut(s) 144, 850, 1073
MluI ACGCGT 1 cut(s) 1086
MluNI TGGCCA 1 cut(s) 682
Mox20I TGGCCA 1 cut(s) 682
MroXI GAANNNNTTC 1 cut(s) 600
MscI TGGCCA 1 cut(s) 682
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 3 cut(s) 351, 654, 738
Msp20I TGGCCA 1 cut(s) 682
MspA1I CMGCKG 3 cut(s) 842, 872, 1217
MspI CCGG 3 cut(s) 293, 987, 1166
MspR9I CCNGG 2 cut(s) 987, 1070
MvaI CCWGG 1 cut(s) 1070
MvnI CGCG 2 cut(s) 715, 1088
MwoI GCNNNNNNNGC 6 cut(s) 269, 371, 569, 907, 1183, 1226
NciI CCSGG 1 cut(s) 987
NdeII GATC 4 cut(s) 213, 379, 954, 1144
NlaIII CATG 5 cut(s) 57, 622, 653, 712, 758
NlaIV GGNNCC 4 cut(s) 291, 585, 761, 887
NspI RCATGY 1 cut(s) 622
NspV TTCGAA 1 cut(s) 513
PaqCI CACCTGC 1 cut(s) 254
PdmI GAANNNNTTC 1 cut(s) 600
PfeI GAWTC 4 cut(s) 314, 499, 696, 800
PpuMI RGGWCCY 1 cut(s) 584
Psp124BI GAGCTC 1 cut(s) 903
Psp5II RGGWCCY 1 cut(s) 584
Psp6I CCWGG 1 cut(s) 1068
PspFI CCCAGC 2 cut(s) 257, 872
PspGI CCWGG 1 cut(s) 1068
PspN4I GGNNCC 4 cut(s) 291, 585, 761, 887
PspPI GGNCC 3 cut(s) 356, 584, 659
PspPPI RGGWCCY 1 cut(s) 584
PstI CTGCAG 2 cut(s) 1179, 1188
PstNI CAGNNNCTG 4 cut(s) 98, 269, 845, 1183
PvuII CAGCTG 3 cut(s) 842, 872, 1217
RsaI GTAC 4 cut(s) 133, 165, 887, 941
RsaNI GTAC 4 cut(s) 132, 164, 886, 940
RseI CAYNNNNRTG 3 cut(s) 351, 654, 738
SacI GAGCTC 1 cut(s) 903
SaqAI TTAA 1 cut(s) 47
Sau3AI GATC 4 cut(s) 213, 379, 954, 1144
Sau96I GGNCC 3 cut(s) 356, 584, 659
ScaI AGTACT 1 cut(s) 165
ScrFI CCNGG 2 cut(s) 987, 1070
SduI GDGCHC 3 cut(s) 880, 895, 903
SfaNI GCATC 1 cut(s) 239
SfcI CTRYAG 3 cut(s) 37, 1175, 1184
SfuI TTCGAA 1 cut(s) 513
SinI GGWCC 2 cut(s) 584, 659
SmiMI CAYNNNNRTG 3 cut(s) 351, 654, 738
SmlI CTYRAG 1 cut(s) 911
SmoI CTYRAG 1 cut(s) 911
SpeI ACTAGT 1 cut(s) 340
Sse9I AATT 3 cut(s) 144, 850, 1073
SspMI CTAG 4 cut(s) 170, 273, 341, 881
SstI GAGCTC 1 cut(s) 903
StyD4I CCNGG 2 cut(s) 985, 1068
StyI CCWWGG 1 cut(s) 946
TaaI ACNGT 3 cut(s) 41, 430, 1139
TaiI ACGT 1 cut(s) 115
TaqI TCGA 4 cut(s) 312, 513, 612, 1194
TasI AATT 3 cut(s) 144, 850, 1073
TatI WGTACW 2 cut(s) 163, 939
TfiI GAWTC 4 cut(s) 314, 499, 696, 800
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 6 cut(s) 20, 46, 450, 474, 1025, 1142
TspDTI ATGAA 3 cut(s) 38, 42, 1013
TspRI CASTG 6 cut(s) 20, 46, 450, 474, 1025, 1142
VpaK11BI GGWCC 2 cut(s) 584, 659
XapI RAATTY 1 cut(s) 144
XceI RCATGY 1 cut(s) 622
XmiI GTMKAC 1 cut(s) 432
XmnI GAANNNNTTC 1 cut(s) 600
XspI CTAG 4 cut(s) 170, 273, 341, 881
ZrmI AGTACT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.