Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003416

Physical Location & Seq

Genomic Coordinates Forward (+)

4079852 .. 4083536

Gene Structure 3685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0052700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1434 bp

ATGTGGTACCTTTGCTTCTTCTTCCACAGACTACTAGACTACAGAAAAGCCGAGGTGGAATCATTAGCCCAACTCTTCTGCTCCGAAGACGAACTAAACGATTTGCAATGGAGGCTGCCACTGCATCACCACCAAGACTCTCCCTTTCACTTCGTCAATCTCCCCTCCGAGGAAGTCGCCACCAAAATCGCCAATCGCAGCATACTAGTAAAAGGAATGTATGAACTTTGGGGAGAAGGAGGTAACTATGAGGAGCTGGAAGAGTCTATACGAAATTATCCAGATGAGCGGAAGTTGCCATATCTAGAGTCAGACAGTACTTTCAAGATTAATGTGGATACCTTTGGTAAGGTCATCAGCCTCCAGGAGCAAACCCAACGCATTCAGGGGTTTAACTACATCCCTTTCAAGGGTCGAGTTAATTTGAGAAGTCCAGAGCACAAGTTCTGGCTCATGGAAACTGATGATTATGGAGCTAATAACGGTCTTCCACCAATAGTAGAAAAAAGAATATTTTTTGGTCGAGAGATTGGTGGTGCTGATAGAAAGCTATTACCAACTTATCAACTGAAAAGCCGCACTTATCTTGGCCCAACAGCCATGGATGCAGAAATCGCATTCCTAATGGCAAACCAAGCATTAGCCACACCAGGGAAGCTTGTTTATGACCCTTTTGTTGGCACTGGGAGTATTCTTATAGCCGCTGCTCATTATGGAGCAATGACAATGGGTGCAGATATTGATATCAGGGTGGTACGCGATGGGCGTGGCCCTGACTGTAACGTTTGGAGCAATTTCAAGCAGTATGGACTACCCATGCCGATTGCTTTGCTAAGGGCAGATAATAATCTTCCTCCTTGGCGTTCTGGGCTGAAAGAGGTATTTGATGCCATAATCTGTGACCCTCCTTATGGTGTTCGTGCTGGTGGGCGCAAATCCGGCGGCCGGAAGTTGCTTAAAGGGGTTGTCGGCCCTTACATTGTGCCTGATGACAAGAGGACAGGCCACATACCATCAACTGGCGCTTACACCTTGGTCGAGTGTGTACACGATTTGCTTGACCTAGCTGCCAGGATGCTTGTAATGGGTGGGAGGCTTGTGTTCTTCTATCCTGTTTTGAGAGAAGACGATAATGCAGAAACCCATTTCCCAGAGCACCCGTGTTTCAAATTGATTGCTTCTTCTGAGCAGATTCTGAGCTCACGTTACAGTCGAGTGTTACTAACCATGGTCAAGACAAGTCAATACACTGAAGAAGTTGCAGAAGCAGCCAGAATTAAACACATCGACTTCAAGGAGAACCATGTAAAGTGGTTAGAAGATGGAAACCTTCATTCTGCAGTTTTCAGTCCCGCCGATGCTCAATTAAATGGGGCTGCTGATGCCAAAGCCACCAGAGAGGCAAAGCCAAAGTACAGGGGGAAATATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0016020 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

477

Amino Acids

54.0

Weight (kDa)

6.41

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tmrp11_N	PF25904	2 - 182	1.3e-32	Tmrp11 THUMP N-terminal domain
UPF0020	PF01170	192 - 314	1.5e-12	RMKL-like, methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51740
fragaria_vesca	FvH4_6g10640 FvH4_6g10640 FvH4_7g25350
malus_domestica	MD01G1159600.v1.1 MD04G1166300.v1.1 MD04G1166400.v1.1 MD07G1228100.v1.1
prunus_persica	Prupe.2G257600_v2.0.a1 Prupe.6G284600_v2.0.a1
pyrus_communis	pycom04g14780 pycom07g20650 pycom12g16950
rosa_chinensis	RchiOBHm_Chr1g0371261 RchiOBHm_Chr1g0371271 RchiOBHm_Chr3g0461661
rosa_laevigata	RLG00000024909 RLG00000026975
rosa_multiflora	Rmu_sc0001978.1_g000006 Rmu_sc0012406.1_g000007
rosa_roxburghii	Rroxscaffold_4G00285830 Rroxscaffold_6G00418060
rosa_rugosa	Rorug01G0362500 Rorug03G0052700
rosa_samantha	Rh1AG372600 Rh1BG336100 Rh1CG349500 Rh1DG367200 Rh3AG111000 Rh3AG111100 Rh3BG114000 Rh3CG116000 Rh3CG116100 Rh3DG115900
rosa_wichuraiana	Rw1G032770 Rw3G009390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	6
AccB1I	GGYRCC	1 cut(s)	6
AccB7I	CCANNNNNTGG	1 cut(s)	1019
AccBSI	CCGCTC	1 cut(s)	289
AccII	CGCG	1 cut(s)	759
AciI	CCGC	5 cut(s)	289, 577, 702, 942, 1353
AclI	AACGTT	1 cut(s)	783
AcoI	YGGCCR	1 cut(s)	943
AcuI	CTGAAG	1 cut(s)	1272
AfaI	GTAC	5 cut(s)	8, 319, 756, 1047, 1415
AfiI	CCNNNNNNNGG	8 cut(s)	169, 409, 410, 651, 677, 911, 945, 1019
AgsI	TTSAA	5 cut(s)	325, 409, 799, 1168, 1294
AhlI	ACTAGT	1 cut(s)	205
AjnI	CCWGG	3 cut(s)	363, 649, 1070
AluBI	AGCT	6 cut(s)	256, 476, 550, 658, 1067, 1200
AluI	AGCT	6 cut(s)	256, 476, 550, 658, 1067, 1200
Alw21I	GWGCWC	3 cut(s)	441, 1158, 1202
AlwNI	CAGNNNCTG	1 cut(s)	1195
AoxI	GGCC	5 cut(s)	589, 769, 943, 970, 1003
ApeKI	GCWGC	6 cut(s)	115, 198, 704, 1067, 1268, 1376
AseI	ATTAAT	1 cut(s)	330
Asp718I	GGTACC	1 cut(s)	6
AspLEI	GCGC	2 cut(s)	933, 1025
AspS9I	GGNCC	3 cut(s)	590, 770, 971
AsuHPI	GGTGA	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	6
BanII	GRGCYC	1 cut(s)	1202
BarI	GAAGNNNNNNTAC	3 cut(s)	31, 252, 284
BbsI	GAAGAC	3 cut(s)	93, 479, 1131
Bbv12I	GWGCWC	3 cut(s)	441, 1158, 1202
BbvI	GCAGC	6 cut(s)	102, 210, 691, 1054, 1280, 1363
BccI	CCATC	3 cut(s)	755, 1021, 1316
BcgI	CGANNNNNNTGC	2 cut(s)	811, 845
BciT130I	CCWGG	3 cut(s)	365, 651, 1072
BciVI	GTATCC	1 cut(s)	331
BcuI	ACTAGT	1 cut(s)	205
BfaI	CTAG	4 cut(s)	35, 206, 305, 1064
BfmI	CTRYAG	2 cut(s)	40, 1338
BfoI	RGCGCY	1 cut(s)	1026
BfuI	GTATCC	1 cut(s)	331
BisI	GCNGC	9 cut(s)	116, 199, 577, 702, 705, 943, 1068, 1269, 1377
BlsI	GCNGC	9 cut(s)	117, 200, 578, 703, 706, 944, 1069, 1270, 1378
BmcAI	AGTACT	1 cut(s)	319
Bme1390I	CCNGG	3 cut(s)	365, 651, 1072
BmgT120I	GGNCC	3 cut(s)	590, 770, 971
BmiI	GGNNCC	1 cut(s)	8
BmrFI	CCNGG	3 cut(s)	365, 651, 1072
BmrI	ACTGGG	1 cut(s)	693
BmsI	GCATC	6 cut(s)	133, 595, 877, 1065, 1348, 1372
BmuI	ACTGGG	1 cut(s)	693
BpiI	GAAGAC	3 cut(s)	93, 479, 1131
BpmI	CTGGAG	1 cut(s)	347
Bpu10I	CCTNAGC	1 cut(s)	833
BsaBI	GATNNNNATC	1 cut(s)	846
BsaJI	CCNNGG	7 cut(s)	51, 168, 600, 650, 857, 1032, 1227
Bsc4I	CCNNNNNNNGG	8 cut(s)	169, 409, 410, 651, 677, 911, 945, 1019
Bse1I	ACTGG	2 cut(s)	688, 1024
Bse3DI	GCAATG	2 cut(s)	113, 726
Bse8I	GATNNNNATC	1 cut(s)	846
BseBI	CCWGG	3 cut(s)	365, 651, 1072
BseDI	CCNNGG	7 cut(s)	51, 168, 600, 650, 857, 1032, 1227
BseGI	GGATG	3 cut(s)	399, 610, 1080
BseJI	GATNNNNATC	1 cut(s)	846
BseLI	CCNNNNNNNGG	8 cut(s)	169, 409, 410, 651, 677, 911, 945, 1019
BseMI	GCAATG	2 cut(s)	113, 726
BseMII	CTCAG	2 cut(s)	1176, 1187
BseNI	ACTGG	2 cut(s)	688, 1024
BseRI	GAGGAG	1 cut(s)	266
BseX3I	CGGCCG	1 cut(s)	943
BseXI	GCAGC	6 cut(s)	102, 210, 691, 1054, 1280, 1363
BsgI	GTGCAG	1 cut(s)	753
Bsh1236I	CGCG	1 cut(s)	759
Bsh1285I	CGRYCG	1 cut(s)	946
BshFI	GGCC	5 cut(s)	591, 771, 945, 972, 1005
BshNI	GGYRCC	1 cut(s)	6
BsiEI	CGRYCG	1 cut(s)	946
BsiHKAI	GWGCWC	3 cut(s)	441, 1158, 1202
BsiSI	CCGG	2 cut(s)	939, 946
BslFI	GGGAC	1 cut(s)	1335
BslI	CCNNNNNNNGG	8 cut(s)	169, 409, 410, 651, 677, 911, 945, 1019
BsmFI	GGGAC	1 cut(s)	1335
BsmI	GAATGC	2 cut(s)	381, 617
BsnI	GGCC	5 cut(s)	591, 771, 945, 972, 1005
Bsp1286I	GDGCHC	3 cut(s)	441, 1158, 1202
Bsp1407I	TGTACA	1 cut(s)	1045
Bsp19I	CCATGG	2 cut(s)	600, 1227
BspACI	CCGC	5 cut(s)	289, 577, 702, 942, 1353
BspANI	GGCC	5 cut(s)	591, 771, 945, 972, 1005
BspCNI	CTCAG	2 cut(s)	1177, 1188
BspFNI	CGCG	1 cut(s)	759
BspLI	GGNNCC	1 cut(s)	8
BspMAI	CTGCAG	1 cut(s)	1342
BspT107I	GGYRCC	1 cut(s)	6
BsrBI	CCGCTC	1 cut(s)	289
BsrDI	GCAATG	2 cut(s)	113, 726
BsrGI	TGTACA	1 cut(s)	1045
BsrI	ACTGG	2 cut(s)	688, 1024
BssECI	CCNNGG	7 cut(s)	51, 168, 600, 650, 857, 1032, 1227
BssT1I	CCWWGG	4 cut(s)	600, 857, 1032, 1227
Bst2UI	CCWGG	3 cut(s)	365, 651, 1072
Bst4CI	ACNGT	4 cut(s)	317, 485, 779, 1211
Bst6I	CTCTTC	2 cut(s)	80, 255
BstAUI	TGTACA	1 cut(s)	1045
BstDEI	CTNAG	3 cut(s)	833, 1185, 1196
BstDSI	CCRYGG	2 cut(s)	600, 1227
BstF5I	GGATG	3 cut(s)	399, 610, 1080
BstFNI	CGCG	1 cut(s)	759
BstH2I	RGCGCY	1 cut(s)	1026
BstHHI	GCGC	2 cut(s)	933, 1025
BstMCI	CGRYCG	1 cut(s)	946
BstNI	CCWGG	3 cut(s)	365, 651, 1072
BstSCI	CCNGG	3 cut(s)	363, 649, 1070
BstSFI	CTRYAG	2 cut(s)	40, 1338
BstUI	CGCG	1 cut(s)	759
BstV1I	GCAGC	6 cut(s)	102, 210, 691, 1054, 1280, 1363
BstV2I	GAAGAC	3 cut(s)	93, 479, 1131
BstZI	CGGCCG	1 cut(s)	943
BsuI	GTATCC	1 cut(s)	331
BsuRI	GGCC	5 cut(s)	591, 771, 945, 972, 1005
BtgI	CCRYGG	2 cut(s)	600, 1227
BtgZI	GCGATG	1 cut(s)	774
BtsCI	GGATG	3 cut(s)	399, 610, 1080
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	3 cut(s)	119, 681, 1248
CaiI	CAGNNNCTG	1 cut(s)	1195
CfoI	GCGC	2 cut(s)	933, 1025
Cfr13I	GGNCC	3 cut(s)	590, 770, 971
Csp6I	GTAC	5 cut(s)	7, 318, 755, 1046, 1414
CviAII	CATG	5 cut(s)	454, 601, 817, 1228, 1304
CviQI	GTAC	5 cut(s)	7, 318, 755, 1046, 1414
DdeI	CTNAG	3 cut(s)	833, 1185, 1196
EaeI	YGGCCR	1 cut(s)	943
EagI	CGGCCG	1 cut(s)	943
Eam1104I	CTCTTC	2 cut(s)	80, 255
EarI	CTCTTC	2 cut(s)	80, 255
Ecl136II	GAGCTC	1 cut(s)	1200
EclXI	CGGCCG	1 cut(s)	943
Eco130I	CCWWGG	4 cut(s)	600, 857, 1032, 1227
Eco24I	GRGCYC	1 cut(s)	1202
Eco32I	GATATC	1 cut(s)	745
Eco52I	CGGCCG	1 cut(s)	943
Eco53kI	GAGCTC	1 cut(s)	1200
Eco57I	CTGAAG	1 cut(s)	1272
EcoICRI	GAGCTC	1 cut(s)	1200
EcoRII	CCWGG	3 cut(s)	363, 649, 1070
EcoRV	GATATC	1 cut(s)	745
EcoT14I	CCWWGG	4 cut(s)	600, 857, 1032, 1227
EcoT38I	GRGCYC	1 cut(s)	1202
ErhI	CCWWGG	4 cut(s)	600, 857, 1032, 1227
FaeI	CATG	5 cut(s)	457, 604, 820, 1231, 1307
FalI	AAGNNNNNCTT	2 cut(s)	565, 597
FaqI	GGGAC	1 cut(s)	1335
FatI	CATG	5 cut(s)	453, 600, 816, 1227, 1303
FauI	CCCGC	1 cut(s)	1360
Fnu4HI	GCNGC	9 cut(s)	116, 199, 577, 702, 705, 943, 1068, 1269, 1377
FokI	GGATG	3 cut(s)	386, 617, 1087
FriOI	GRGCYC	1 cut(s)	1202
Fsp4HI	GCNGC	9 cut(s)	116, 199, 577, 702, 705, 943, 1068, 1269, 1377
FspBI	CTAG	4 cut(s)	35, 206, 305, 1064
GlaI	GCGC	2 cut(s)	932, 1024
GluI	GCNGC	9 cut(s)	116, 199, 577, 702, 705, 943, 1068, 1269, 1377
GsuI	CTGGAG	1 cut(s)	347
HaeII	RGCGCY	1 cut(s)	1026
HaeIII	GGCC	5 cut(s)	591, 771, 945, 972, 1005
HapII	CCGG	2 cut(s)	939, 946
HhaI	GCGC	2 cut(s)	933, 1025
Hin1II	CATG	5 cut(s)	457, 604, 820, 1231, 1307
Hin6I	GCGC	2 cut(s)	931, 1023
HinP1I	GCGC	2 cut(s)	931, 1023
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	5 cut(s)	59, 137, 263, 308, 1192
HpaII	CCGG	2 cut(s)	939, 946
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	2 cut(s)	1046, 1048
Hpy188I	TCNGA	5 cut(s)	85, 169, 313, 1186, 1197
Hpy188III	TCNNGA	6 cut(s)	281, 305, 325, 434, 524, 1234
Hpy8I	GTNNAC	2 cut(s)	1046, 1048
HpyAV	CCTTC	2 cut(s)	230, 1340
HpyCH4III	ACNGT	4 cut(s)	317, 485, 779, 1211
HpyCH4IV	ACGT	2 cut(s)	783, 1204
HpyCH4V	TGCA	7 cut(s)	106, 124, 608, 734, 1136, 1262, 1340
HpyF3I	CTNAG	3 cut(s)	833, 1185, 1196
HpySE526I	ACGT	2 cut(s)	783, 1204
Hsp92II	CATG	5 cut(s)	457, 604, 820, 1231, 1307
HspAI	GCGC	2 cut(s)	931, 1023
KpnI	GGTACC	1 cut(s)	10
LmnI	GCTCC	6 cut(s)	86, 253, 367, 473, 716, 789
Lsp1109I	GCAGC	6 cut(s)	102, 210, 691, 1054, 1280, 1363
LweI	GCATC	6 cut(s)	133, 595, 877, 1065, 1348, 1372
MaeI	CTAG	4 cut(s)	35, 206, 305, 1064
MaeII	ACGT	2 cut(s)	783, 1204
MaeIII	GTNAC	5 cut(s)	242, 779, 899, 1205, 1218
MbiI	CCGCTC	1 cut(s)	289
MhlI	GDGCHC	3 cut(s)	441, 1158, 1202
MluCI	AATT	6 cut(s)	274, 421, 793, 1169, 1275, 1364
MlyI	GAGTC	3 cut(s)	131, 272, 317
MseI	TTAA	6 cut(s)	330, 393, 420, 957, 1278, 1367
MspA1I	CMGCKG	1 cut(s)	704
MspI	CCGG	2 cut(s)	939, 946
MspR9I	CCNGG	3 cut(s)	365, 651, 1072
Mva1269I	GAATGC	2 cut(s)	381, 617
MvaI	CCWGG	3 cut(s)	365, 651, 1072
MvnI	CGCG	1 cut(s)	759
NcoI	CCATGG	2 cut(s)	600, 1227
NlaIII	CATG	5 cut(s)	457, 604, 820, 1231, 1307
NlaIV	GGNNCC	1 cut(s)	8
NmeAIII	GCCGAG	1 cut(s)	76
NmuCI	GTSAC	1 cut(s)	899
PcsI	WCGNNNNNNNCGW	3 cut(s)	96, 763, 1210
PctI	GAATGC	2 cut(s)	381, 617
PfeI	GAWTC	2 cut(s)	59, 1192
PflMI	CCANNNNNTGG	1 cut(s)	1019
PfoI	TCCNGGA	1 cut(s)	363
PkrI	GCNGC	9 cut(s)	117, 200, 578, 703, 706, 944, 1069, 1270, 1378
PleI	GAGTC	3 cut(s)	131, 271, 316
PpsI	GAGTC	3 cut(s)	131, 271, 316
PshBI	ATTAAT	1 cut(s)	330
Psp124BI	GAGCTC	1 cut(s)	1202
Psp1406I	AACGTT	1 cut(s)	783
Psp6I	CCWGG	3 cut(s)	363, 649, 1070
PspGI	CCWGG	3 cut(s)	363, 649, 1070
PspN4I	GGNNCC	1 cut(s)	8
PspPI	GGNCC	3 cut(s)	590, 770, 971
PstI	CTGCAG	1 cut(s)	1342
PstNI	CAGNNNCTG	1 cut(s)	1195
RsaI	GTAC	5 cut(s)	8, 319, 756, 1047, 1415
RsaNI	GTAC	5 cut(s)	7, 318, 755, 1046, 1414
SacI	GAGCTC	1 cut(s)	1202
SaqAI	TTAA	6 cut(s)	330, 393, 420, 957, 1278, 1367
SatI	GCNGC	9 cut(s)	116, 199, 577, 702, 705, 943, 1068, 1269, 1377
Sau96I	GGNCC	3 cut(s)	590, 770, 971
ScaI	AGTACT	1 cut(s)	319
SchI	GAGTC	3 cut(s)	131, 272, 317
ScrFI	CCNGG	3 cut(s)	365, 651, 1072
SduI	GDGCHC	3 cut(s)	441, 1158, 1202
SfaNI	GCATC	6 cut(s)	133, 595, 877, 1065, 1348, 1372
SfcI	CTRYAG	2 cut(s)	40, 1338
SpeI	ACTAGT	1 cut(s)	205
Sse9I	AATT	6 cut(s)	274, 421, 793, 1169, 1275, 1364
SsiI	CCGC	5 cut(s)	289, 577, 702, 942, 1353
SspI	AATATT	1 cut(s)	513
SspMI	CTAG	4 cut(s)	35, 206, 305, 1064
SstI	GAGCTC	1 cut(s)	1202
StyD4I	CCNGG	3 cut(s)	363, 649, 1070
StyI	CCWWGG	4 cut(s)	600, 857, 1032, 1227
TaaI	ACNGT	4 cut(s)	317, 485, 779, 1211
TaiI	ACGT	2 cut(s)	786, 1207
TaqI	TCGA	5 cut(s)	415, 523, 1038, 1213, 1287
TasI	AATT	6 cut(s)	274, 421, 793, 1169, 1275, 1364
TatI	WGTACW	3 cut(s)	317, 1045, 1413
TauI	GCSGC	3 cut(s)	579, 704, 945
TfiI	GAWTC	2 cut(s)	59, 1192
Tru1I	TTAA	6 cut(s)	330, 393, 420, 957, 1278, 1367
Tru9I	TTAA	6 cut(s)	330, 393, 420, 957, 1278, 1367
TscAI	CASTG	3 cut(s)	126, 688, 1255
TseFI	GTSAC	1 cut(s)	899
TseI	GCWGC	6 cut(s)	115, 198, 704, 1067, 1268, 1376
Tsp45I	GTSAC	1 cut(s)	899
TspDTI	ATGAA	2 cut(s)	237, 1322
TspRI	CASTG	3 cut(s)	126, 688, 1255
Van91I	CCANNNNNTGG	1 cut(s)	1019
VspI	ATTAAT	1 cut(s)	330
XbaI	TCTAGA	1 cut(s)	304
XspI	CTAG	4 cut(s)	35, 206, 305, 1064
ZrmI	AGTACT	1 cut(s)	319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.