Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003416

Physical Location & Seq

Genomic Coordinates Reverse (-)

47792691 .. 47792897

Gene Structure 207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0362500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGACTGCGGCGGTGGCCGTGGAGAAGGGGATTGTTGACTCGGCGGTTAATGGCGCGGAGGAGACGGTTGAGGCGGCGGTTAGATTGGGGGAGGAGTTGGTTAGGAGGCAGTGGAAGGGACACGTGTACGCTCAGATTCGCCTTGGCTTGATGTCGGAGGTCTTGGAGGCGATGCGAAACCATGACTGTACTAGATCCCTACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0016020 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase_Tyr

Protein Analysis

68

Amino Acids

7.48

Weight (kDa)

5.59

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51740
fragaria_vesca	FvH4_6g10640 FvH4_6g10640 FvH4_7g25350
malus_domestica	MD01G1159600.v1.1 MD04G1166300.v1.1 MD04G1166400.v1.1 MD07G1228100.v1.1
prunus_persica	Prupe.2G257600_v2.0.a1 Prupe.6G284600_v2.0.a1
pyrus_communis	pycom04g14780 pycom07g20650 pycom12g16950
rosa_chinensis	RchiOBHm_Chr1g0371261 RchiOBHm_Chr1g0371271 RchiOBHm_Chr3g0461661
rosa_laevigata	RLG00000024909 RLG00000026975
rosa_multiflora	Rmu_sc0001978.1_g000006 Rmu_sc0012406.1_g000007
rosa_roxburghii	Rroxscaffold_4G00285830 Rroxscaffold_6G00418060
rosa_rugosa	Rorug01G0362500 Rorug03G0052700
rosa_samantha	Rh1AG372600 Rh1BG336100 Rh1CG349500 Rh1DG367200 Rh3AG111000 Rh3AG111100 Rh3BG114000 Rh3CG116000 Rh3CG116100 Rh3DG115900
rosa_wichuraiana	Rw1G032770 Rw3G009390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	56
AciI	CCGC	6 cut(s)	8, 11, 44, 56, 74, 77
AclWI	GGATC	1 cut(s)	189
AcoI	YGGCCR	1 cut(s)	15
AcvI	CACGTG	1 cut(s)	124
AfaI	GTAC	2 cut(s)	128, 190
AflIII	ACRYGT	2 cut(s)	121, 123
Alw26I	GTCTC	1 cut(s)	56
AlwI	GGATC	1 cut(s)	189
AoxI	GGCC	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	56
BbrPI	CACGTG	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	2
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	1 cut(s)	192
BfmI	CTRYAG	1 cut(s)	203
BisI	GCNGC	2 cut(s)	9, 75
BlsI	GCNGC	2 cut(s)	10, 76
BmsI	GCATC	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	124
BsaJI	CCNNGG	2 cut(s)	18, 142
BseDI	CCNNGG	2 cut(s)	18, 142
BseMII	CTCAG	1 cut(s)	146
BseRI	GAGGAG	2 cut(s)	74, 107
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	17
BslFI	GGGAC	1 cut(s)	132
BsmAI	GTCTC	1 cut(s)	56
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	132
BsnI	GGCC	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	194
BspACI	CCGC	6 cut(s)	8, 11, 44, 56, 74, 77
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	145
BspFNI	CGCG	1 cut(s)	56
BspPI	GGATC	1 cut(s)	189
BssECI	CCNNGG	2 cut(s)	18, 142
BssMI	GATC	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	142
Bst4CI	ACNGT	3 cut(s)	67, 188, 204
BstBAI	YACGTR	1 cut(s)	124
BstDEI	CTNAG	1 cut(s)	132
BstDSI	CCRYGG	1 cut(s)	18
BstFNI	CGCG	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	1 cut(s)	197
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	194
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstSFI	CTRYAG	1 cut(s)	203
BstUI	CGCG	1 cut(s)	56
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	17
BtgI	CCRYGG	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	185
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	116
CfoI	GCGC	1 cut(s)	56
Csp6I	GTAC	2 cut(s)	127, 189
CviAII	CATG	1 cut(s)	182
CviJI	RGCY	2 cut(s)	17, 147
CviKI_1	RGCY	2 cut(s)	17, 147
CviQI	GTAC	2 cut(s)	127, 189
DdeI	CTNAG	1 cut(s)	132
DpnI	GATC	1 cut(s)	196
DpnII	GATC	1 cut(s)	194
EaeI	YGGCCR	1 cut(s)	15
Eco130I	CCWWGG	1 cut(s)	142
Eco72I	CACGTG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	142
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	1 cut(s)	185
FaiI	YATR	1 cut(s)	183
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	1 cut(s)	181
Fnu4HI	GCNGC	2 cut(s)	9, 75
Fsp4HI	GCNGC	2 cut(s)	9, 75
FspBI	CTAG	1 cut(s)	192
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	2 cut(s)	9, 75
HaeIII	GGCC	1 cut(s)	17
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	185
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	37
HindII	GTYRAC	1 cut(s)	37
HinfI	GANTC	2 cut(s)	38, 136
Hpy166II	GTNNAC	2 cut(s)	37, 127
Hpy188I	TCNGA	2 cut(s)	135, 157
Hpy8I	GTNNAC	2 cut(s)	37, 127
HpyAV	CCTTC	2 cut(s)	19, 109
HpyCH4III	ACNGT	3 cut(s)	67, 188, 204
HpyCH4IV	ACGT	1 cut(s)	123
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	132
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	185
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	194
LweI	GCATC	1 cut(s)	162
MaeI	CTAG	1 cut(s)	192
MaeII	ACGT	1 cut(s)	123
MalI	GATC	1 cut(s)	196
MboI	GATC	1 cut(s)	194
MflI	RGATCY	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	6 cut(s)	52, 64, 85, 99, 151, 160
MseI	TTAA	1 cut(s)	48
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	1 cut(s)	194
NlaIII	CATG	1 cut(s)	185
NmeAIII	GCCGAG	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	2 cut(s)	10, 76
PleI	GAGTC	1 cut(s)	32
PmaCI	CACGTG	1 cut(s)	124
PmlI	CACGTG	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	32
Ppu21I	YACGTR	1 cut(s)	124
PspCI	CACGTG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	194
RsaI	GTAC	2 cut(s)	128, 190
RsaNI	GTAC	2 cut(s)	127, 189
SaqAI	TTAA	1 cut(s)	48
SatI	GCNGC	2 cut(s)	9, 75
Sau3AI	GATC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	32
SetI	ASST	2 cut(s)	126, 162
SfaNI	GCATC	1 cut(s)	162
SfcI	CTRYAG	1 cut(s)	203
SgeI	CNNG	9 cut(s)	31, 52, 67, 134, 136, 155, 160, 175, 194
SsiI	CCGC	6 cut(s)	8, 11, 44, 56, 74, 77
SspMI	CTAG	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	142
TaaI	ACNGT	3 cut(s)	67, 188, 204
TaiI	ACGT	1 cut(s)	126
TatI	WGTACW	1 cut(s)	188
TauI	GCSGC	2 cut(s)	11, 77
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	1 cut(s)	116
TspRI	CASTG	1 cut(s)	116
XspI	CTAG	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.