Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003416

Physical Location & Seq

Genomic Coordinates Forward (+)

9346692 .. 9347330

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG111100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGTCTATTGATTATGCAGCTCGCGGACCAGAAATGATCATTGATTGGCCAACAAGGATGAACATAGCCATTGGAGTCACAAGAGGACTATGCCACCTCCACTACCAGGAGAACATCATACATGGGAATCTCACATCCAGCAACATACTACTTGATGAGCAGACTAATGCTCACATTGCAGACTATGGCCTTTCGAGCCTCATGACCCCCGCTGCCAACACCAATGTAATTGCCACTGCAGGAACCCTCGGCTACAATGCGCCAGAGCTCTCAAAGACCAAGAAGAGCACAGAAAAAACTGATGTCTACAGCCTTGGGGTGATCATACTGGAGCTCCTAACAGGAAAATCACCCGGAGAGCCAATGAATGGCATGGACTTGCCGCAGTGGGTGGCGTCGATTGTTAAGGAGGAGTGGACTAATGAAGTTTTTGATTTGGAGCTTATAAGGGATGTTCCAATCATAGGTGATCAGCTGCTTAACACACTGAAATTGGCGCTGCATTGTGTGGATCCCTCACCGGCCGCAAGACCAGAGGCTCAGCAAGTTCTGCAGCAGCTAGAAGAGATTAAGCCACCTGAGGTAAATGTTGGTTCTGCTGACGAAGGAACAGAAGTACCGGCATCAGCAACTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0016020 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

212

Amino Acids

23.01

Weight (kDa)

4.55

Isoelectric Point (pI)

43.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	15 - 187	1.2e-20	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	20 - 186	4.3e-25	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003416)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51740
fragaria_vesca	FvH4_6g10640 FvH4_6g10640 FvH4_7g25350
malus_domestica	MD01G1159600.v1.1 MD04G1166300.v1.1 MD04G1166400.v1.1 MD07G1228100.v1.1
prunus_persica	Prupe.2G257600_v2.0.a1 Prupe.6G284600_v2.0.a1
pyrus_communis	pycom04g14780 pycom07g20650 pycom12g16950
rosa_chinensis	RchiOBHm_Chr1g0371261 RchiOBHm_Chr1g0371271 RchiOBHm_Chr3g0461661
rosa_laevigata	RLG00000024909 RLG00000026975
rosa_multiflora	Rmu_sc0001978.1_g000006 Rmu_sc0012406.1_g000007
rosa_roxburghii	Rroxscaffold_4G00285830 Rroxscaffold_6G00418060
rosa_rugosa	Rorug01G0362500 Rorug03G0052700
rosa_samantha	Rh1AG372600 Rh1BG336100 Rh1CG349500 Rh1DG367200 Rh3AG111000 Rh3AG111100 Rh3BG114000 Rh3CG116000 Rh3CG116100 Rh3DG115900
rosa_wichuraiana	Rw1G032770 Rw3G009390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	446
AccB7I	CCANNNNNTGG	1 cut(s)	368
AccI	GTMKAC	1 cut(s)	306
AccII	CGCG	1 cut(s)	24
AciI	CCGC	4 cut(s)	24, 210, 383, 525
AclWI	GGATC	2 cut(s)	506, 519
AcoI	YGGCCR	2 cut(s)	47, 522
AcyI	GRCGYC	1 cut(s)	395
AfaI	GTAC	1 cut(s)	618
AfiI	CCNNNNNNNGG	3 cut(s)	106, 368, 464
AjnI	CCWGG	1 cut(s)	105
AluBI	AGCT	6 cut(s)	20, 268, 334, 442, 475, 559
AluI	AGCT	6 cut(s)	20, 268, 334, 442, 475, 559
Alw21I	GWGCWC	3 cut(s)	270, 290, 336
AlwI	GGATC	2 cut(s)	506, 519
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	3 cut(s)	47, 187, 522
ApeKI	GCWGC	6 cut(s)	17, 212, 475, 499, 553, 556
AspLEI	GCGC	2 cut(s)	262, 499
AspS9I	GGNCC	1 cut(s)	26
AsuC2I	CCSGG	1 cut(s)	354
AsuHPI	GGTGA	4 cut(s)	331, 342, 479, 510
AvaII	GGWCC	1 cut(s)	26
AxyI	CCTNAGG	1 cut(s)	579
BaeI	ACNNNNGTAYC	2 cut(s)	600, 633
BalI	TGGCCA	1 cut(s)	49
BamHI	GGATCC	1 cut(s)	511
BanII	GRGCYC	2 cut(s)	270, 336
Bbv12I	GWGCWC	3 cut(s)	270, 290, 336
BbvI	GCAGC	6 cut(s)	29, 199, 462, 486, 565, 568
BciT130I	CCWGG	1 cut(s)	107
BclI	TGATCA	3 cut(s)	36, 321, 469
BcnI	CCSGG	1 cut(s)	354
BfaI	CTAG	1 cut(s)	560
BfmI	CTRYAG	3 cut(s)	237, 307, 551
BfoI	RGCGCY	1 cut(s)	500
BisI	GCNGC	8 cut(s)	18, 213, 383, 476, 500, 525, 554, 557
BlpI	GCTNAGC	1 cut(s)	540
BlsI	GCNGC	8 cut(s)	19, 214, 384, 477, 501, 526, 555, 558
Bme1390I	CCNGG	2 cut(s)	107, 354
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	2 cut(s)	244, 513
BmrFI	CCNGG	2 cut(s)	107, 354
BmsI	GCATC	1 cut(s)	632
BpmI	CTGGAG	1 cut(s)	350
Bpu1102I	GCTNAGC	1 cut(s)	540
BpuMI	CCSGG	1 cut(s)	354
BsaHI	GRCGYC	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	247, 313
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	3 cut(s)	106, 368, 464
Bse118I	RCCGGY	2 cut(s)	520, 619
Bse1I	ACTGG	1 cut(s)	333
Bse21I	CCTNAGG	1 cut(s)	579
Bse3DI	GCAATG	1 cut(s)	174
BseBI	CCWGG	1 cut(s)	107
BseDI	CCNNGG	2 cut(s)	247, 313
BseGI	GGATG	3 cut(s)	63, 134, 457
BseLI	CCNNNNNNNGG	3 cut(s)	106, 368, 464
BseMI	GCAATG	1 cut(s)	174
BseMII	CTCAG	3 cut(s)	554, 570, 624
BseNI	ACTGG	1 cut(s)	333
BseRI	GAGGAG	1 cut(s)	425
BseX3I	CGGCCG	1 cut(s)	522
BseXI	GCAGC	6 cut(s)	29, 199, 462, 486, 565, 568
Bsh1236I	CGCG	1 cut(s)	24
Bsh1285I	CGRYCG	1 cut(s)	525
BshFI	GGCC	3 cut(s)	49, 189, 524
BsiEI	CGRYCG	1 cut(s)	525
BsiHKAI	GWGCWC	3 cut(s)	270, 290, 336
BsiSI	CCGG	3 cut(s)	354, 521, 620
BslI	CCNNNNNNNGG	3 cut(s)	106, 368, 464
BsnI	GGCC	3 cut(s)	49, 189, 524
Bsp1286I	GDGCHC	3 cut(s)	270, 290, 336
Bsp143I	GATC	4 cut(s)	36, 321, 469, 511
Bsp1720I	GCTNAGC	1 cut(s)	540
BspACI	CCGC	4 cut(s)	24, 210, 383, 525
BspANI	GGCC	3 cut(s)	49, 189, 524
BspCNI	CTCAG	3 cut(s)	553, 571, 625
BspFNI	CGCG	1 cut(s)	24
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	2 cut(s)	244, 513
BspMAI	CTGCAG	2 cut(s)	241, 555
BspPI	GGATC	2 cut(s)	506, 519
BspQI	GCTCTTC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	174
BsrFI	RCCGGY	2 cut(s)	520, 619
BsrI	ACTGG	1 cut(s)	333
BssAI	RCCGGY	2 cut(s)	520, 619
BssECI	CCNNGG	2 cut(s)	247, 313
BssMI	GATC	4 cut(s)	36, 321, 469, 511
BssNI	GRCGYC	1 cut(s)	395
BssT1I	CCWWGG	1 cut(s)	313
Bst2UI	CCWGG	1 cut(s)	107
Bst6I	CTCTTC	2 cut(s)	278, 558
BstACI	GRCGYC	1 cut(s)	395
BstAPI	GCANNNNNTGC	1 cut(s)	550
BstC8I	GCNNGC	1 cut(s)	22
BstDEI	CTNAG	3 cut(s)	540, 579, 633
BstF5I	GGATG	3 cut(s)	63, 134, 457
BstFNI	CGCG	1 cut(s)	24
BstH2I	RGCGCY	1 cut(s)	500
BstHHI	GCGC	2 cut(s)	262, 499
BstKTI	GATC	4 cut(s)	39, 324, 472, 514
BstMBI	GATC	4 cut(s)	36, 321, 469, 511
BstMCI	CGRYCG	1 cut(s)	525
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 195, 550
BstNI	CCWGG	1 cut(s)	107
BstSCI	CCNGG	2 cut(s)	105, 352
BstSFI	CTRYAG	3 cut(s)	237, 307, 551
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	6 cut(s)	29, 199, 462, 486, 565, 568
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BstZI	CGGCCG	1 cut(s)	522
Bsu36I	CCTNAGG	1 cut(s)	579
BsuRI	GGCC	3 cut(s)	49, 189, 524
BtsCI	GGATG	3 cut(s)	63, 134, 457
BtsI	GCAGTG	2 cut(s)	234, 392
BtsIMutI	CAGTG	3 cut(s)	234, 392, 485
Cac8I	GCNNGC	1 cut(s)	22
CaiI	CAGNNNCTG	1 cut(s)	632
CciI	TCATGA	1 cut(s)	201
CfoI	GCGC	2 cut(s)	262, 499
Cfr10I	RCCGGY	2 cut(s)	520, 619
Cfr13I	GGNCC	1 cut(s)	26
CseI	GACGC	1 cut(s)	384
Csp6I	GTAC	1 cut(s)	617
CviAII	CATG	3 cut(s)	122, 202, 373
CviQI	GTAC	1 cut(s)	617
DdeI	CTNAG	3 cut(s)	540, 579, 633
DpnI	GATC	4 cut(s)	38, 323, 471, 513
DpnII	GATC	4 cut(s)	36, 321, 469, 511
EaeI	YGGCCR	2 cut(s)	47, 522
EagI	CGGCCG	1 cut(s)	522
Eam1104I	CTCTTC	2 cut(s)	278, 558
EarI	CTCTTC	2 cut(s)	278, 558
Ecl136II	GAGCTC	2 cut(s)	268, 334
EclXI	CGGCCG	1 cut(s)	522
Eco130I	CCWWGG	1 cut(s)	313
Eco24I	GRGCYC	2 cut(s)	270, 336
Eco47I	GGWCC	1 cut(s)	26
Eco52I	CGGCCG	1 cut(s)	522
Eco53kI	GAGCTC	2 cut(s)	268, 334
Eco81I	CCTNAGG	1 cut(s)	579
EcoICRI	GAGCTC	2 cut(s)	268, 334
EcoRII	CCWGG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	313
EcoT38I	GRGCYC	2 cut(s)	270, 336
ErhI	CCWWGG	1 cut(s)	313
FaeI	CATG	3 cut(s)	125, 205, 376
FatI	CATG	3 cut(s)	121, 201, 372
FauI	CCCGC	1 cut(s)	217
FbaI	TGATCA	3 cut(s)	36, 321, 469
FblI	GTMKAC	1 cut(s)	306
Fnu4HI	GCNGC	8 cut(s)	18, 213, 383, 476, 500, 525, 554, 557
FokI	GGATG	3 cut(s)	70, 121, 464
FriOI	GRGCYC	2 cut(s)	270, 336
Fsp4HI	GCNGC	8 cut(s)	18, 213, 383, 476, 500, 525, 554, 557
FspBI	CTAG	1 cut(s)	560
GlaI	GCGC	2 cut(s)	261, 498
GluI	GCNGC	8 cut(s)	18, 213, 383, 476, 500, 525, 554, 557
GsuI	CTGGAG	1 cut(s)	350
HaeII	RGCGCY	1 cut(s)	500
HaeIII	GGCC	3 cut(s)	49, 189, 524
HapII	CCGG	3 cut(s)	354, 521, 620
HgaI	GACGC	1 cut(s)	384
HhaI	GCGC	2 cut(s)	262, 499
Hin1I	GRCGYC	1 cut(s)	395
Hin1II	CATG	3 cut(s)	125, 205, 376
Hin6I	GCGC	2 cut(s)	260, 497
HinP1I	GCGC	2 cut(s)	260, 497
HinfI	GANTC	2 cut(s)	75, 127
HpaII	CCGG	3 cut(s)	354, 521, 620
HphI	GGTGA	4 cut(s)	331, 342, 479, 510
Hpy166II	GTNNAC	2 cut(s)	307, 417
Hpy188III	TCNNGA	1 cut(s)	202
Hpy8I	GTNNAC	2 cut(s)	307, 417
Hpy99I	CGWCG	1 cut(s)	400
HpyAV	CCTTC	1 cut(s)	599
HpyCH4V	TGCA	5 cut(s)	17, 179, 239, 502, 553
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 195, 550
HpyF3I	CTNAG	3 cut(s)	540, 579, 633
Hsp92I	GRCGYC	1 cut(s)	395
Hsp92II	CATG	3 cut(s)	125, 205, 376
HspAI	GCGC	2 cut(s)	260, 497
Ksp22I	TGATCA	3 cut(s)	36, 321, 469
Kzo9I	GATC	4 cut(s)	36, 321, 469, 511
LguI	GCTCTTC	1 cut(s)	278
LmnI	GCTCC	3 cut(s)	331, 339, 439
Lsp1109I	GCAGC	6 cut(s)	29, 199, 462, 486, 565, 568
LweI	GCATC	1 cut(s)	632
MaeI	CTAG	1 cut(s)	560
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	4 cut(s)	38, 323, 471, 513
MboI	GATC	4 cut(s)	36, 321, 469, 511
MboII	GAAGA	2 cut(s)	295, 575
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	3 cut(s)	270, 290, 336
MlsI	TGGCCA	1 cut(s)	49
MluCI	AATT	2 cut(s)	228, 491
MluNI	TGGCCA	1 cut(s)	49
MlyI	GAGTC	1 cut(s)	84
MnlI	CCTC	8 cut(s)	77, 107, 209, 257, 403, 526, 529, 574
Mox20I	TGGCCA	1 cut(s)	49
MscI	TGGCCA	1 cut(s)	49
MseI	TTAA	3 cut(s)	405, 480, 570
Msp20I	TGGCCA	1 cut(s)	49
MspA1I	CMGCKG	2 cut(s)	212, 475
MspI	CCGG	3 cut(s)	354, 521, 620
MspR9I	CCNGG	2 cut(s)	107, 354
MvaI	CCWGG	1 cut(s)	107
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	176, 195, 550
NciI	CCSGG	1 cut(s)	354
NdeII	GATC	4 cut(s)	36, 321, 469, 511
NlaIII	CATG	3 cut(s)	125, 205, 376
NlaIV	GGNNCC	2 cut(s)	244, 513
NmeAIII	GCCGAG	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	76
PagI	TCATGA	1 cut(s)	201
PciSI	GCTCTTC	1 cut(s)	278
PfeI	GAWTC	1 cut(s)	127
PflMI	CCANNNNNTGG	1 cut(s)	368
PkrI	GCNGC	8 cut(s)	19, 214, 384, 477, 501, 526, 555, 558
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PsiI	TTATAA	1 cut(s)	446
Psp124BI	GAGCTC	2 cut(s)	270, 336
Psp6I	CCWGG	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	244, 513
PspPI	GGNCC	1 cut(s)	26
PstI	CTGCAG	2 cut(s)	241, 555
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	511
PvuII	CAGCTG	1 cut(s)	475
RsaI	GTAC	1 cut(s)	618
RsaNI	GTAC	1 cut(s)	617
SacI	GAGCTC	2 cut(s)	270, 336
SapI	GCTCTTC	1 cut(s)	278
SaqAI	TTAA	3 cut(s)	405, 480, 570
SatI	GCNGC	8 cut(s)	18, 213, 383, 476, 500, 525, 554, 557
Sau3AI	GATC	4 cut(s)	36, 321, 469, 511
Sau96I	GGNCC	1 cut(s)	26
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	2 cut(s)	107, 354
SduI	GDGCHC	3 cut(s)	270, 290, 336
SfaNI	GCATC	1 cut(s)	632
SfcI	CTRYAG	3 cut(s)	237, 307, 551
SinI	GGWCC	1 cut(s)	26
Sse9I	AATT	2 cut(s)	228, 491
SsiI	CCGC	4 cut(s)	24, 210, 383, 525
SspMI	CTAG	1 cut(s)	560
SstI	GAGCTC	2 cut(s)	270, 336
StyD4I	CCNGG	2 cut(s)	105, 352
StyI	CCWWGG	1 cut(s)	313
TaqI	TCGA	2 cut(s)	194, 398
TasI	AATT	2 cut(s)	228, 491
TauI	GCSGC	2 cut(s)	385, 527
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	3 cut(s)	405, 480, 570
Tru9I	TTAA	3 cut(s)	405, 480, 570
TscAI	CASTG	3 cut(s)	241, 392, 492
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	6 cut(s)	17, 212, 475, 499, 553, 556
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	3 cut(s)	74, 380, 438
TspRI	CASTG	3 cut(s)	241, 392, 492
Van91I	CCANNNNNTGG	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	306
XspI	CTAG	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.