RchiOBHm_Chr2g0110191

lactoylglutathione

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0010618
Physical Location & Seq
Forward (+)
21692394 .. 21692801
408 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48389

Sequence Viewer

Length: 408 bp
ATGAGGATATTCGTTGCTTCGGAGCTTCTAGAATTGCCCAAGAAGGACAAGCGCCGCCTCCTCCATGCCGTGTACTGCGTCGGTGATCTCGAGCGCACCATCAAGTTTCACACTGAGGCTCTTGGGATGAAGCTGTTGTGGCAGAGGGATATTCCGGACGAGAAGTACTCGAATGCTTTCCTCGAATTCGGGCCGGAAGAAACGAACTTTGTAATGGAGCTCACTTACAATTATGGAGTAATTCCTATGATATTGGGATTGGTTTTGGTTACAAAAGAGCTTGGAGGAAAGATAACAAGAGAGTCGGTAAAGGACTGGGAAAATTTCTGGTCACAGCCATGGAGGAAGAGAGGGAGAGTGTCAAAGTCAGAAAGAGGTACAAGTACTAAATTACCCTCTGACAAGTGA

Protein Analysis

135

Amino Acids

15.78

Weight (kDa)

9.21

Isoelectric Point (pI)

23.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyoxalase PF00903 19 - 67 1.8e-07 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 154
AciI CCGC 1 cut(s) 55
AcsI RAATTY 2 cut(s) 185, 322
AfaI GTAC 4 cut(s) 74, 167, 379, 385
AluBI AGCT 4 cut(s) 25, 133, 220, 280
AluI AGCT 4 cut(s) 25, 133, 220, 280
Alw21I GWGCWC 1 cut(s) 222
Ama87I CYCGRG 1 cut(s) 89
Aor13HI TCCGGA 1 cut(s) 154
AoxI GGCC 1 cut(s) 191
ApoI RAATTY 2 cut(s) 185, 322
Asp700I GAANNNNTTC 1 cut(s) 176
AspLEI GCGC 2 cut(s) 54, 96
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 95
AvaI CYCGRG 1 cut(s) 89
BanII GRGCYC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 222
BccI CCATC 1 cut(s) 107
BceAI ACGGC 1 cut(s) 53
BfaI CTAG 1 cut(s) 29
BfoI RGCGCY 1 cut(s) 55
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
BmcAI AGTACT 2 cut(s) 167, 385
BmeT110I CYCGRG 1 cut(s) 89
BmgT120I GGNCC 1 cut(s) 191
BmrI ACTGGG 1 cut(s) 325
BmuI ACTGGG 1 cut(s) 325
BplI GAGNNNNNCTC 2 cut(s) 152, 184
BsaJI CCNNGG 1 cut(s) 338
BsaWI WCCGGW 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 320
BseAI TCCGGA 1 cut(s) 154
BseDI CCNNGG 1 cut(s) 338
BseGI GGATG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 50
BshFI GGCC 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 2 cut(s) 155, 194
BsmI GAATGC 1 cut(s) 178
BsnI GGCC 1 cut(s) 193
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 222
Bsp13I TCCGGA 1 cut(s) 154
Bsp143I GATC 1 cut(s) 85
Bsp19I CCATGG 1 cut(s) 338
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 193
BspCNI CTCAG 1 cut(s) 106
BspEI TCCGGA 1 cut(s) 154
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 338
BssMI GATC 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 338
Bst6I CTCTTC 1 cut(s) 341
BstDEI CTNAG 1 cut(s) 114
BstDSI CCRYGG 1 cut(s) 338
BstF5I GGATG 1 cut(s) 132
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 2 cut(s) 54, 96
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 193
BtgI CCRYGG 1 cut(s) 338
BtsCI GGATG 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 111
CfoI GCGC 2 cut(s) 54, 96
Cfr13I GGNCC 1 cut(s) 191
CseI GACGC 1 cut(s) 67
Csp6I GTAC 4 cut(s) 73, 166, 378, 384
CviAII CATG 2 cut(s) 65, 339
CviJI RGCY 7 cut(s) 25, 119, 133, 193, 220, 280, 337
CviKI_1 RGCY 7 cut(s) 25, 119, 133, 193, 220, 280, 337
CviQI GTAC 4 cut(s) 73, 166, 378, 384
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 338
Eco24I GRGCYC 1 cut(s) 222
Eco53kI GAGCTC 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 89
EcoICRI GAGCTC 1 cut(s) 220
EcoRI GAATTC 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 338
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 338
FaeI CATG 2 cut(s) 68, 342
FaiI YATR 4 cut(s) 66, 234, 248, 340
FatI CATG 2 cut(s) 64, 338
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 1 cut(s) 139
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 55
FspBI CTAG 1 cut(s) 29
GlaI GCGC 2 cut(s) 53, 95
GluI GCNGC 1 cut(s) 55
HaeII RGCGCY 1 cut(s) 55
HaeIII GGCC 1 cut(s) 193
HapII CCGG 2 cut(s) 155, 194
HgaI GACGC 1 cut(s) 67
HhaI GCGC 2 cut(s) 54, 96
Hin1II CATG 2 cut(s) 68, 342
Hin6I GCGC 2 cut(s) 52, 94
HinP1I GCGC 2 cut(s) 52, 94
HinfI GANTC 1 cut(s) 302
HpaII CCGG 2 cut(s) 155, 194
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 3 cut(s) 22, 370, 400
Hpy188III TCNNGA 3 cut(s) 29, 89, 155
Hpy8I GTNNAC 1 cut(s) 73
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 2 cut(s) 68, 342
HspAI GCGC 2 cut(s) 52, 94
Kpn2I TCCGGA 1 cut(s) 154
Kzo9I GATC 1 cut(s) 85
LmnI GCTCC 2 cut(s) 22, 217
LpnPI CCDG 4 cut(s) 168, 207, 301, 313
MaeI CTAG 1 cut(s) 29
MaeIII GTNAC 2 cut(s) 268, 330
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 2 cut(s) 209, 358
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 6 cut(s) 32, 185, 229, 240, 322, 389
MlyI GAGTC 1 cut(s) 311
MroI TCCGGA 1 cut(s) 154
MroXI GAANNNNTTC 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 337
MspI CCGG 2 cut(s) 155, 194
Mva1269I GAATGC 1 cut(s) 178
MwoI GCNNNNNNNGC 1 cut(s) 139
NcoI CCATGG 1 cut(s) 338
NdeII GATC 1 cut(s) 85
NlaIII CATG 2 cut(s) 68, 342
NmuCI GTSAC 1 cut(s) 330
PaeR7I CTCGAG 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PctI GAATGC 1 cut(s) 178
PdmI GAANNNNTTC 1 cut(s) 176
PkrI GCNGC 1 cut(s) 56
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp124BI GAGCTC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 191
RsaI GTAC 4 cut(s) 74, 167, 379, 385
RsaNI GTAC 4 cut(s) 73, 166, 378, 384
RseI CAYNNNNRTG 1 cut(s) 337
SacI GAGCTC 1 cut(s) 222
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 1 cut(s) 85
Sau96I GGNCC 1 cut(s) 191
ScaI AGTACT 2 cut(s) 167, 385
SchI GAGTC 1 cut(s) 311
SduI GDGCHC 1 cut(s) 222
SetI ASST 5 cut(s) 27, 135, 222, 282, 379
Sfr274I CTCGAG 1 cut(s) 89
SlaI CTCGAG 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 337
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 6 cut(s) 32, 185, 229, 240, 322, 389
SsiI CCGC 1 cut(s) 55
SspMI CTAG 1 cut(s) 29
SstI GAGCTC 1 cut(s) 222
StyI CCWWGG 1 cut(s) 338
TaqI TCGA 3 cut(s) 90, 170, 183
TasI AATT 6 cut(s) 32, 185, 229, 240, 322, 389
TatI WGTACW 3 cut(s) 72, 165, 383
TauI GCSGC 1 cut(s) 57
TscAI CASTG 1 cut(s) 118
TseFI GTSAC 1 cut(s) 330
Tsp45I GTSAC 1 cut(s) 330
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 1 cut(s) 118
XapI RAATTY 2 cut(s) 185, 322
XbaI TCTAGA 1 cut(s) 28
XhoI CTCGAG 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 176
XspI CTAG 1 cut(s) 29
ZrmI AGTACT 2 cut(s) 167, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.