Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020732.1

Orthogroup ID

OG0010618

Physical Location & Seq

Genomic Coordinates Forward (+)

4967 .. 8262

Gene Structure 3296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020732.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atgaggatattcatcgcttcggagcttcttcaattgcccaagaaggacaagcactgcctcctccacaccgtgtaccgcgtcgacgatctcgagcgcaccatcaagttttacaccaaggctcttgggatgaagctattgttgctattgcggcatagggatattccggaagagatgtactcgaatgctttccttggattcaggccggaagaaacgaactttgtaatggagctcacttacaattatggagtaattcctatgatattgggattgggtttgggtttggttacaaaagagcttagaggaaagataacaagggagtcggagtccagaacgggcggtgccaccccaagaaccggccagaaacctaccgaactggctaccggaagctctaaaccacttgcagcaaatactccacatgaaccagaagaaatagcccaaaaaccgctccgaaagatcctgaactggcaacgtgaacatcggcagaaaagaagaaaaaagaaaaagaaaaagtggaggaggcagcctaagccgagcccagaagccttcaaccccaactccagaagcccacagtcaactcggcccactcaccaacagcctctgccacgacatcattcaggacccactgccacgttatcaccgagggacccactaccacgtcagcactcagtcaactccggtcaacaccgccgacaacttttccagccattttttccagtgactttttctggccaaatttcccggcggcctatttcaagaatgagtaacctgaacaaattggacttttctccattgggaacaacttgctctggatatcacaggtgggttcgtgatgtttgccagcatctcaaggccaatggaattctggatacaattctcaagcctaaccaggacgtgctaactgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004462 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005829 GO:0005886 GO:0006081 GO:0006082 GO:0006089 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009438 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016151 GO:0016829 GO:0016846 GO:0019243 GO:0019752 GO:0019863 GO:0019865 GO:0031967 GO:0031975 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046185 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051596 GO:0061727 GO:0071704 GO:0071944 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

301

Amino Acids

34.68

Weight (kDa)

10.44

Isoelectric Point (pI)

53.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010618)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110191 RchiOBHm_Chr4g0413001
rosa_laevigata	RLG00000009902 RLG00000022903
rosa_multiflora	Rmu_sc0020732.1_g000002
rosa_roxburghii	Rroxscaffold_4G00303600
rosa_rugosa	Rorug04G0159500 Rorug05G0176000 Rorug06G0078000
rosa_samantha	Rh2AG218600 Rh2AG399700 Rh2BG092100 Rh2BG408500 Rh2DG224500 Rh4AG177000 Rh4CG187900 Rh6BG398900 Rh7AG001300 Rh7CG001100 Rh7CG452500 Rh7DG001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	338
AccBSI	CCGCTC	1 cut(s)	445
AccI	GTMKAC	1 cut(s)	81
AccII	CGCG	1 cut(s)	78
AccIII	TCCGGA	1 cut(s)	163
AciI	CCGC	6 cut(s)	76, 148, 336, 443, 685, 742
AclWI	GGATC	1 cut(s)	448
AcoI	YGGCCR	2 cut(s)	355, 727
AcsI	RAATTY	2 cut(s)	732, 858
AdeI	CACNNNGTG	1 cut(s)	70
AfaI	GTAC	2 cut(s)	74, 176
AfiI	CCNNNNNNNGG	1 cut(s)	353
AgsI	TTSAA	3 cut(s)	32, 547, 753
AjiI	CACGTC	2 cut(s)	656, 892
AjnI	CCWGG	1 cut(s)	885
AluBI	AGCT	5 cut(s)	25, 133, 229, 295, 387
AluI	AGCT	5 cut(s)	25, 133, 229, 295, 387
Alw21I	GWGCWC	1 cut(s)	231
AlwI	GGATC	1 cut(s)	448
AlwNI	CAGNNNCTG	1 cut(s)	598
Ama87I	CYCGRG	1 cut(s)	89
Aor13HI	TCCGGA	1 cut(s)	163
AoxI	GGCC	6 cut(s)	200, 355, 578, 727, 743, 849
ApeKI	GCWGC	2 cut(s)	401, 520
ApoI	RAATTY	2 cut(s)	732, 858
Asp700I	GAANNNNTTC	1 cut(s)	185
AspLEI	GCGC	1 cut(s)	96
AspS9I	GGNCC	3 cut(s)	579, 617, 643
AsuC2I	CCSGG	1 cut(s)	739
AsuHPI	GGTGA	2 cut(s)	578, 627
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	2 cut(s)	617, 643
BalI	TGGCCA	1 cut(s)	729
BanI	GGYRCC	1 cut(s)	338
BanII	GRGCYC	2 cut(s)	231, 536
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	413, 532
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	1 cut(s)	887
BciVI	GTATCC	1 cut(s)	859
BcnI	CCSGG	1 cut(s)	739
BfuI	GTATCC	1 cut(s)	859
BisI	GCNGC	4 cut(s)	149, 402, 521, 743
BlsI	GCNGC	4 cut(s)	150, 403, 522, 744
Bme1390I	CCNGG	2 cut(s)	739, 887
Bme18I	GGWCC	2 cut(s)	617, 643
BmeT110I	CYCGRG	1 cut(s)	89
BmgBI	CACGTC	2 cut(s)	656, 892
BmgT120I	GGNCC	3 cut(s)	579, 617, 643
BmiI	GGNNCC	4 cut(s)	340, 619, 644, 645
BmrFI	CCNGG	2 cut(s)	739, 887
BmsI	GCATC	1 cut(s)	850
BplI	GAGNNNNNCTC	2 cut(s)	161, 193
BpmI	CTGGAG	1 cut(s)	541
Bpu10I	CCTNAGC	1 cut(s)	525
BpuEI	CTTGAG	2 cut(s)	830, 860
BpuMI	CCSGG	1 cut(s)	739
BsaBI	GATNNNNATC	1 cut(s)	11
BsaJI	CCNNGG	3 cut(s)	114, 190, 638
BsaWI	WCCGGW	3 cut(s)	163, 380, 674
BsaXI	ACNNNNNCTCC	4 cut(s)	308, 338, 539, 569
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse118I	RCCGGY	1 cut(s)	353
Bse1I	ACTGG	3 cut(s)	378, 467, 713
Bse8I	GATNNNNATC	1 cut(s)	11
BseAI	TCCGGA	1 cut(s)	163
BseBI	CCWGG	1 cut(s)	887
BseDI	CCNNGG	3 cut(s)	114, 190, 638
BseGI	GGATG	1 cut(s)	132
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	678
BseNI	ACTGG	3 cut(s)	378, 467, 713
BseRI	GAGGAG	2 cut(s)	50, 529
BseXI	GCAGC	2 cut(s)	413, 532
Bsh1236I	CGCG	1 cut(s)	78
BshFI	GGCC	6 cut(s)	202, 357, 580, 729, 745, 851
BshNI	GGYRCC	1 cut(s)	338
BsiHKAI	GWGCWC	1 cut(s)	231
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	6 cut(s)	164, 203, 354, 381, 675, 739
BslFI	GGGAC	1 cut(s)	656
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	656
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	6 cut(s)	202, 357, 580, 729, 745, 851
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	2 cut(s)	231, 536
Bsp13I	TCCGGA	1 cut(s)	163
Bsp143I	GATC	2 cut(s)	85, 453
BspACI	CCGC	6 cut(s)	76, 148, 336, 443, 685, 742
BspANI	GGCC	6 cut(s)	202, 357, 580, 729, 745, 851
BspCNI	CTCAG	1 cut(s)	677
BspEI	TCCGGA	1 cut(s)	163
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	4 cut(s)	340, 619, 644, 645
BspPI	GGATC	1 cut(s)	448
BspT107I	GGYRCC	1 cut(s)	338
BsrBI	CCGCTC	1 cut(s)	445
BsrFI	RCCGGY	1 cut(s)	353
BsrI	ACTGG	3 cut(s)	378, 467, 713
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	3 cut(s)	114, 190, 638
BssMI	GATC	2 cut(s)	85, 453
BssT1I	CCWWGG	2 cut(s)	114, 190
Bst2UI	CCWGG	1 cut(s)	887
Bst4CI	ACNGT	2 cut(s)	70, 570
Bst6I	CTCTTC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	839
BstDEI	CTNAG	3 cut(s)	296, 525, 664
BstF5I	GGATG	1 cut(s)	132
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	2 cut(s)	88, 456
BstMBI	GATC	2 cut(s)	85, 453
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 148, 526
BstNI	CCWGG	1 cut(s)	887
BstSCI	CCNGG	2 cut(s)	737, 885
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	2 cut(s)	413, 532
BstX2I	RGATCY	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	453
BsuI	GTATCC	1 cut(s)	859
BsuRI	GGCC	6 cut(s)	202, 357, 580, 729, 745, 851
BtrI	CACGTC	2 cut(s)	656, 892
BtsCI	GGATG	1 cut(s)	132
BtsI	GCAGTG	2 cut(s)	52, 621
BtsIMutI	CAGTG	3 cut(s)	52, 621, 720
Cac8I	GCNNGC	1 cut(s)	839
CaiI	CAGNNNCTG	1 cut(s)	598
CfoI	GCGC	1 cut(s)	96
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	3 cut(s)	579, 617, 643
CseI	GACGC	1 cut(s)	67
Csp6I	GTAC	2 cut(s)	73, 175
CviAII	CATG	1 cut(s)	416
CviQI	GTAC	2 cut(s)	73, 175
DdeI	CTNAG	3 cut(s)	296, 525, 664
DpnI	GATC	2 cut(s)	87, 455
DpnII	GATC	2 cut(s)	85, 453
DraIII	CACNNNGTG	1 cut(s)	70
EaeI	YGGCCR	2 cut(s)	355, 727
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	2 cut(s)	114, 190
Eco24I	GRGCYC	2 cut(s)	231, 536
Eco32I	GATATC	1 cut(s)	812
Eco47I	GGWCC	2 cut(s)	617, 643
Eco53kI	GAGCTC	1 cut(s)	229
Eco88I	CYCGRG	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	2 cut(s)	617, 643
EcoRI	GAATTC	1 cut(s)	858
EcoRII	CCWGG	1 cut(s)	885
EcoRV	GATATC	1 cut(s)	812
EcoT14I	CCWWGG	2 cut(s)	114, 190
EcoT38I	GRGCYC	2 cut(s)	231, 536
ErhI	CCWWGG	2 cut(s)	114, 190
FaeI	CATG	1 cut(s)	419
FaiI	YATR	4 cut(s)	153, 243, 257, 417
FaqI	GGGAC	1 cut(s)	656
FatI	CATG	1 cut(s)	415
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	4 cut(s)	149, 402, 521, 743
FokI	GGATG	1 cut(s)	139
FriOI	GRGCYC	2 cut(s)	231, 536
Fsp4HI	GCNGC	4 cut(s)	149, 402, 521, 743
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	4 cut(s)	149, 402, 521, 743
GsuI	CTGGAG	1 cut(s)	541
HaeIII	GGCC	6 cut(s)	202, 357, 580, 729, 745, 851
HapII	CCGG	6 cut(s)	164, 203, 354, 381, 675, 739
HgaI	GACGC	1 cut(s)	67
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	419
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HincII	GTYRAC	4 cut(s)	82, 573, 670, 680
HindII	GTYRAC	4 cut(s)	82, 573, 670, 680
HinfI	GANTC	3 cut(s)	195, 317, 323
HpaII	CCGG	6 cut(s)	164, 203, 354, 381, 675, 739
HphI	GGTGA	2 cut(s)	578, 627
Hpy166II	GTNNAC	6 cut(s)	73, 82, 473, 573, 670, 680
Hpy188I	TCNGA	3 cut(s)	22, 322, 449
Hpy8I	GTNNAC	6 cut(s)	73, 82, 473, 573, 670, 680
Hpy99I	CGWCG	2 cut(s)	83, 86
HpyAV	CCTTC	2 cut(s)	37, 553
HpyCH4III	ACNGT	2 cut(s)	70, 570
HpyCH4IV	ACGT	4 cut(s)	469, 629, 655, 891
HpyCH4V	TGCA	1 cut(s)	401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 148, 526
HpyF3I	CTNAG	3 cut(s)	296, 525, 664
HpySE526I	ACGT	4 cut(s)	469, 629, 655, 891
Hsp92II	CATG	1 cut(s)	419
HspAI	GCGC	1 cut(s)	94
KflI	GGGWCCC	1 cut(s)	643
Kpn2I	TCCGGA	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	85, 453
LmnI	GCTCC	3 cut(s)	22, 226, 450
Lsp1109I	GCAGC	2 cut(s)	413, 532
LweI	GCATC	1 cut(s)	850
MaeII	ACGT	4 cut(s)	469, 629, 655, 891
MaeIII	GTNAC	3 cut(s)	283, 715, 761
MalI	GATC	2 cut(s)	87, 455
MbiI	CCGCTC	1 cut(s)	445
MboI	GATC	2 cut(s)	85, 453
MboII	GAAGA	5 cut(s)	20, 179, 218, 437, 501
MfeI	CAATTG	1 cut(s)	32
MflI	RGATCY	1 cut(s)	453
MhlI	GDGCHC	2 cut(s)	231, 536
MlsI	TGGCCA	1 cut(s)	729
MluCI	AATT	7 cut(s)	32, 238, 249, 732, 773, 858, 870
MluNI	TGGCCA	1 cut(s)	729
MlyI	GAGTC	2 cut(s)	326, 332
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	7 cut(s)	68, 71, 293, 507, 510, 606, 633
Mox20I	TGGCCA	1 cut(s)	729
MroI	TCCGGA	1 cut(s)	163
MroXI	GAANNNNTTC	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	729
Msp20I	TGGCCA	1 cut(s)	729
MspI	CCGG	6 cut(s)	164, 203, 354, 381, 675, 739
MspR9I	CCNGG	2 cut(s)	739, 887
MunI	CAATTG	1 cut(s)	32
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	887
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	3 cut(s)	139, 148, 526
NciI	CCSGG	1 cut(s)	739
NdeII	GATC	2 cut(s)	85, 453
NlaIII	CATG	1 cut(s)	419
NlaIV	GGNNCC	4 cut(s)	340, 619, 644, 645
NmeAIII	GCCGAG	2 cut(s)	555, 556
NmuCI	GTSAC	1 cut(s)	715
PaeR7I	CTCGAG	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 635
PctI	GAATGC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	195
PkrI	GCNGC	4 cut(s)	150, 403, 522, 744
PleI	GAGTC	2 cut(s)	325, 331
PpsI	GAGTC	2 cut(s)	325, 331
PpuMI	RGGWCCY	2 cut(s)	617, 643
Psp124BI	GAGCTC	1 cut(s)	231
Psp5II	RGGWCCY	2 cut(s)	617, 643
Psp6I	CCWGG	1 cut(s)	885
PspGI	CCWGG	1 cut(s)	885
PspN4I	GGNNCC	4 cut(s)	340, 619, 644, 645
PspPI	GGNCC	3 cut(s)	579, 617, 643
PspPPI	RGGWCCY	2 cut(s)	617, 643
PstNI	CAGNNNCTG	1 cut(s)	598
PsuI	RGATCY	1 cut(s)	453
RsaI	GTAC	2 cut(s)	74, 176
RsaNI	GTAC	2 cut(s)	73, 175
SacI	GAGCTC	1 cut(s)	231
SalI	GTCGAC	1 cut(s)	80
SatI	GCNGC	4 cut(s)	149, 402, 521, 743
Sau3AI	GATC	2 cut(s)	85, 453
Sau96I	GGNCC	3 cut(s)	579, 617, 643
SchI	GAGTC	2 cut(s)	326, 332
ScrFI	CCNGG	2 cut(s)	739, 887
SduI	GDGCHC	2 cut(s)	231, 536
SfaNI	GCATC	1 cut(s)	850
Sfr274I	CTCGAG	1 cut(s)	89
SgrDI	CGTCGACG	1 cut(s)	80
SinI	GGWCC	2 cut(s)	617, 643
SlaI	CTCGAG	1 cut(s)	89
SmlI	CTYRAG	3 cut(s)	89, 845, 875
SmoI	CTYRAG	3 cut(s)	89, 845, 875
Sse9I	AATT	7 cut(s)	32, 238, 249, 732, 773, 858, 870
SsiI	CCGC	6 cut(s)	76, 148, 336, 443, 685, 742
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	737, 885
StyI	CCWWGG	2 cut(s)	114, 190
TaaI	ACNGT	2 cut(s)	70, 570
TaiI	ACGT	4 cut(s)	472, 632, 658, 894
TaqI	TCGA	3 cut(s)	81, 90, 179
TasI	AATT	7 cut(s)	32, 238, 249, 732, 773, 858, 870
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	2 cut(s)	151, 745
TfiI	GAWTC	1 cut(s)	195
TscAI	CASTG	3 cut(s)	59, 628, 720
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	2 cut(s)	401, 520
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	2 cut(s)	143, 432
TspRI	CASTG	3 cut(s)	59, 628, 720
VpaK11BI	GGWCC	2 cut(s)	617, 643
XapI	RAATTY	2 cut(s)	732, 858
XcmI	CCANNNNNNNNNTGG	1 cut(s)	859
XhoI	CTCGAG	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	81
XmnI	GAANNNNTTC	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.