Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010618

Physical Location & Seq

Genomic Coordinates Forward (+)

37094373 .. 37094909

Gene Structure 537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ38359

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGCGGAGGCGGGCGGCGGCGAGCGACGATGATGAAGGTGAAAGTGAGGGGAGGAAGAATCGTGGGCAGATCCAACGGCTCCCATTCACTCTGATGAATCGGACGATAGAAGAAGAAATTGATGAGGATATTCGTCACTTCAGAGCTTCAGAGCTTCTGGAATTGCCCAAGAAGGACAAGCACCACCTCTTCCACACCGTGTACCGCGTTGGGGATCTCGACCGCACCATCAAGTTTTACACTGAGGCTCTTGGGTTGAAGCTGTTGCGGCAGAGGGACATTCCGGAAGAGAAGTACTCGAATGCTTTCCTCGGATTCAGGCTGGAAGAAACGAACTTTGTAATGGAGCTCACTTTCAATTATGGAGTAATTCCTATGATATTGGGATTGGGTTTGGTCACAAAAGAGCTTGGAGGAAAGATAACAAGAGAGTACGTAAAGGACTGGGAAAATTTCTGGTCGCAGACATGGAGGAAGAGAGGGAGAGTATCAAAGTCAGAAAGAGGTACAAGTACTAAATTACCCTCTGACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004462 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005829 GO:0005886 GO:0006081 GO:0006082 GO:0006089 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009438 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016151 GO:0016829 GO:0016846 GO:0019243 GO:0019752 GO:0019863 GO:0019865 GO:0031967 GO:0031975 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046185 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051596 GO:0061727 GO:0071704 GO:0071944 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

178

Amino Acids

20.98

Weight (kDa)

9.07

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	63 - 103	3e-08	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010618)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110191 RchiOBHm_Chr4g0413001
rosa_laevigata	RLG00000009902 RLG00000022903
rosa_multiflora	Rmu_sc0020732.1_g000002
rosa_roxburghii	Rroxscaffold_4G00303600
rosa_rugosa	Rorug04G0159500 Rorug05G0176000 Rorug06G0078000
rosa_samantha	Rh2AG218600 Rh2AG399700 Rh2BG092100 Rh2BG408500 Rh2DG224500 Rh4AG177000 Rh4CG187900 Rh6BG398900 Rh7AG001300 Rh7CG001100 Rh7CG452500 Rh7DG001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	207
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	7 cut(s)	4, 10, 14, 17, 205, 223, 268
AclWI	GGATC	2 cut(s)	64, 222
AcsI	RAATTY	1 cut(s)	451
AcuI	CTGAAG	2 cut(s)	124, 132
AdeI	CACNNNGTG	1 cut(s)	199
AfaI	GTAC	5 cut(s)	203, 296, 434, 508, 514
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	2 cut(s)	259, 358
AluBI	AGCT	5 cut(s)	146, 154, 262, 349, 409
AluI	AGCT	5 cut(s)	146, 154, 262, 349, 409
Alw21I	GWGCWC	1 cut(s)	351
AlwI	GGATC	2 cut(s)	64, 222
Aor13HI	TCCGGA	1 cut(s)	283
ApoI	RAATTY	1 cut(s)	451
Asp700I	GAANNNNTTC	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	351
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	1 cut(s)	92
BisI	GCNGC	3 cut(s)	15, 18, 269
BlsI	GCNGC	3 cut(s)	16, 19, 270
BmcAI	AGTACT	2 cut(s)	296, 514
BmiI	GGNNCC	1 cut(s)	80
BmrI	ACTGGG	1 cut(s)	454
BmuI	ACTGGG	1 cut(s)	454
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BsaAI	YACGTR	1 cut(s)	436
BsaJI	CCNNGG	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	449
BseAI	TCCGGA	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	310
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	1 cut(s)	449
Bsh1236I	CGCG	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	223
BsiEI	CGRYCG	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	284
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp13I	TCCGGA	1 cut(s)	283
Bsp143I	GATC	2 cut(s)	69, 214
BspACI	CCGC	7 cut(s)	4, 10, 14, 17, 205, 223, 268
BspCNI	CTCAG	1 cut(s)	235
BspEI	TCCGGA	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	80
BspPI	GGATC	2 cut(s)	64, 222
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	2 cut(s)	69, 214
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	3 cut(s)	194, 282, 470
BstBAI	YACGTR	1 cut(s)	436
BstC8I	GCNNGC	2 cut(s)	12, 22
BstDEI	CTNAG	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	2 cut(s)	72, 217
BstMBI	GATC	2 cut(s)	69, 214
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstSNI	TACGTA	1 cut(s)	436
BstUI	CGCG	1 cut(s)	207
BstX2I	RGATCY	2 cut(s)	69, 214
BstYI	RGATCY	2 cut(s)	69, 214
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	12, 22
Csp6I	GTAC	5 cut(s)	202, 295, 433, 507, 513
CviAII	CATG	1 cut(s)	468
CviJI	RGCY	8 cut(s)	79, 146, 154, 248, 262, 322, 349, 409
CviKI_1	RGCY	8 cut(s)	79, 146, 154, 248, 262, 322, 349, 409
CviQI	GTAC	5 cut(s)	202, 295, 433, 507, 513
DdeI	CTNAG	1 cut(s)	243
DpnI	GATC	2 cut(s)	71, 216
DpnII	GATC	2 cut(s)	69, 214
DraIII	CACNNNGTG	1 cut(s)	199
Eam1104I	CTCTTC	3 cut(s)	194, 282, 470
EarI	CTCTTC	3 cut(s)	194, 282, 470
Ecl136II	GAGCTC	1 cut(s)	349
Eco105I	TACGTA	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	349
Eco57I	CTGAAG	2 cut(s)	124, 132
EcoICRI	GAGCTC	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	351
FaeI	CATG	1 cut(s)	471
FaiI	YATR	3 cut(s)	363, 377, 469
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	1 cut(s)	467
FauI	CCCGC	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	15, 18, 269
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	3 cut(s)	15, 18, 269
GluI	GCNGC	3 cut(s)	15, 18, 269
HapII	CCGG	1 cut(s)	284
Hin1II	CATG	1 cut(s)	471
HinfI	GANTC	3 cut(s)	58, 97, 315
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	7 cut(s)	93, 102, 143, 151, 314, 499, 529
Hpy188III	TCNNGA	3 cut(s)	158, 218, 284
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	29, 166
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	435
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	1 cut(s)	471
Kpn2I	TCCGGA	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	69, 214
LmnI	GCTCC	2 cut(s)	84, 346
LpnPI	CCDG	6 cut(s)	143, 297, 304, 308, 430, 442
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	2 cut(s)	134, 397
MalI	GATC	2 cut(s)	71, 216
MboI	GATC	2 cut(s)	69, 214
MboII	GAAGA	7 cut(s)	67, 122, 125, 181, 299, 338, 487
MflI	RGATCY	2 cut(s)	69, 214
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	6 cut(s)	117, 161, 358, 369, 451, 518
MmeI	TCCRAC	1 cut(s)	97
MroI	TCCGGA	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	305
MslI	CAYNNNNRTG	1 cut(s)	92
MspI	CCGG	1 cut(s)	284
Mva1269I	GAATGC	1 cut(s)	307
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	268
NdeII	GATC	2 cut(s)	69, 214
NlaIII	CATG	1 cut(s)	471
NlaIV	GGNNCC	1 cut(s)	80
NmuCI	GTSAC	2 cut(s)	134, 397
PctI	GAATGC	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	305
PfeI	GAWTC	3 cut(s)	58, 97, 315
PkrI	GCNGC	3 cut(s)	16, 19, 270
Ppu21I	YACGTR	1 cut(s)	436
Psp124BI	GAGCTC	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	80
PsuI	RGATCY	2 cut(s)	69, 214
RsaI	GTAC	5 cut(s)	203, 296, 434, 508, 514
RsaNI	GTAC	5 cut(s)	202, 295, 433, 507, 513
RseI	CAYNNNNRTG	1 cut(s)	92
SacI	GAGCTC	1 cut(s)	351
SatI	GCNGC	3 cut(s)	15, 18, 269
Sau3AI	GATC	2 cut(s)	69, 214
ScaI	AGTACT	2 cut(s)	296, 514
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	9 cut(s)	40, 148, 156, 189, 264, 351, 411, 438, 508
SmiMI	CAYNNNNRTG	1 cut(s)	92
SnaBI	TACGTA	1 cut(s)	436
Sse9I	AATT	6 cut(s)	117, 161, 358, 369, 451, 518
SsiI	CCGC	7 cut(s)	4, 10, 14, 17, 205, 223, 268
SstI	GAGCTC	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	2 cut(s)	219, 299
TasI	AATT	6 cut(s)	117, 161, 358, 369, 451, 518
TatI	WGTACW	2 cut(s)	294, 512
TauI	GCSGC	3 cut(s)	17, 20, 271
TfiI	GAWTC	3 cut(s)	58, 97, 315
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	2 cut(s)	134, 397
Tsp45I	GTSAC	2 cut(s)	134, 397
TspDTI	ATGAA	2 cut(s)	48, 110
TspRI	CASTG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	451
XmnI	GAANNNNTTC	1 cut(s)	305
ZrmI	AGTACT	2 cut(s)	296, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.