Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010618

Physical Location & Seq

Genomic Coordinates Reverse (-)

62633605 .. 62634937

Gene Structure 1333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG398900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAGGATATTCGTCGCTCCGGAGCTTCTGGAATGGCCCAAGAAAGACAAGCACCGCGTCGGAGATCTCGAGCGCACCATCAAGTTTTACACTGAGGCTCTTGGGATGAAGCTGTTGCGGCGGAGGGATATTCCAGAAGATAAGTACTCGAATGCTTTCCTCGGATTCGGGCCGGAAGAAACGAACTTTGTAATGGAGCTCATTTACAATTATGGAATTAATTCCTACGATATTGGGATTGGGTTTGGTTACAAAAGAGCTTGGAGAAAAGATAACAAGAGAGTAGGTAAAGGATTGGGAAAATTTCCGGTTGCGGCCATGGAGGAAGAGAAAGAGAGAGAGTCAAAGTCAGAGAGATGTGAAAGTACTAAATTATCCTCTAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004462 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005829 GO:0005886 GO:0006081 GO:0006082 GO:0006089 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009438 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016151 GO:0016829 GO:0016846 GO:0019243 GO:0019752 GO:0019863 GO:0019865 GO:0031967 GO:0031975 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046185 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051596 GO:0061727 GO:0071704 GO:0071944 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

129

Amino Acids

15.09

Weight (kDa)

9.28

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	19 - 80	1.3e-07	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010618)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110191 RchiOBHm_Chr4g0413001
rosa_laevigata	RLG00000009902 RLG00000022903
rosa_multiflora	Rmu_sc0020732.1_g000002
rosa_roxburghii	Rroxscaffold_4G00303600
rosa_rugosa	Rorug04G0159500 Rorug05G0176000 Rorug06G0078000
rosa_samantha	Rh2AG218600 Rh2AG399700 Rh2BG092100 Rh2BG408500 Rh2DG224500 Rh4AG177000 Rh4CG187900 Rh6BG398900 Rh7AG001300 Rh7CG001100 Rh7CG452500 Rh7DG001400

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	57
AccIII	TCCGGA	1 cut(s)	19
AciI	CCGC	4 cut(s)	55, 118, 121, 314
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	302
AfaI	GTAC	2 cut(s)	146, 367
AluBI	AGCT	4 cut(s)	25, 112, 199, 260
AluI	AGCT	4 cut(s)	25, 112, 199, 260
Alw21I	GWGCWC	1 cut(s)	201
Ama87I	CYCGRG	1 cut(s)	68
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	3 cut(s)	35, 170, 315
ApoI	RAATTY	1 cut(s)	302
AseI	ATTAAT	1 cut(s)	219
Asp700I	GAANNNNTTC	2 cut(s)	155, 220
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	2 cut(s)	36, 170
AvaI	CYCGRG	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	201
BccI	CCATC	1 cut(s)	86
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	2 cut(s)	119, 315
BlsI	GCNGC	2 cut(s)	120, 316
BmcAI	AGTACT	2 cut(s)	146, 367
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	2 cut(s)	36, 170
BsaJI	CCNNGG	2 cut(s)	160, 318
BsaWI	WCCGGW	2 cut(s)	19, 307
BseAI	TCCGGA	1 cut(s)	19
BseDI	CCNNGG	2 cut(s)	160, 318
BseGI	GGATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	3 cut(s)	37, 172, 317
BsiHKAI	GWGCWC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	3 cut(s)	20, 173, 308
BsmI	GAATGC	1 cut(s)	157
BsnI	GGCC	3 cut(s)	37, 172, 317
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	64
Bsp19I	CCATGG	1 cut(s)	318
BspACI	CCGC	4 cut(s)	55, 118, 121, 314
BspANI	GGCC	3 cut(s)	37, 172, 317
BspCNI	CTCAG	1 cut(s)	85
BspEI	TCCGGA	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	160, 318
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	318
Bst6I	CTCTTC	1 cut(s)	321
BstDEI	CTNAG	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	111
BstFNI	CGCG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	118
BstUI	CGCG	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	3 cut(s)	37, 172, 317
BtgI	CCRYGG	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	90
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	2 cut(s)	36, 170
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	2 cut(s)	145, 366
CviAII	CATG	1 cut(s)	319
CviJI	RGCY	8 cut(s)	25, 37, 98, 112, 172, 199, 260, 317
CviKI_1	RGCY	8 cut(s)	25, 37, 98, 112, 172, 199, 260, 317
CviQI	GTAC	2 cut(s)	145, 366
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
EciI	GGCGGA	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	318
Eco24I	GRGCYC	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	68
EcoICRI	GAGCTC	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	201
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	1 cut(s)	322
FaiI	YATR	2 cut(s)	213, 320
FatI	CATG	1 cut(s)	318
Fnu4HI	GCNGC	2 cut(s)	119, 315
FokI	GGATG	1 cut(s)	118
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	2 cut(s)	119, 315
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	2 cut(s)	119, 315
HaeIII	GGCC	3 cut(s)	37, 172, 317
HapII	CCGG	3 cut(s)	20, 173, 308
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	322
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HinfI	GANTC	2 cut(s)	165, 341
HpaII	CCGG	3 cut(s)	20, 173, 308
Hpy188I	TCNGA	3 cut(s)	62, 164, 352
Hpy188III	TCNNGA	4 cut(s)	20, 29, 68, 134
Hpy99I	CGWCG	2 cut(s)	17, 62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	118
HpyF3I	CTNAG	1 cut(s)	93
Hsp92II	CATG	1 cut(s)	322
HspAI	GCGC	1 cut(s)	73
Kpn2I	TCCGGA	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	3 cut(s)	22, 22, 196
LpnPI	CCDG	5 cut(s)	14, 33, 147, 186, 321
MaeIII	GTNAC	1 cut(s)	248
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	3 cut(s)	149, 188, 338
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	5 cut(s)	208, 216, 220, 302, 371
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	5 cut(s)	88, 117, 170, 316, 388
MroI	TCCGGA	1 cut(s)	19
MroXI	GAANNNNTTC	2 cut(s)	155, 220
MseI	TTAA	1 cut(s)	219
MspI	CCGG	3 cut(s)	20, 173, 308
Mva1269I	GAATGC	1 cut(s)	157
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	1 cut(s)	118
NcoI	CCATGG	1 cut(s)	318
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	322
PaeR7I	CTCGAG	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PctI	GAATGC	1 cut(s)	157
PdmI	GAANNNNTTC	2 cut(s)	155, 220
PfeI	GAWTC	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	120, 316
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
PshBI	ATTAAT	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	201
PspPI	GGNCC	2 cut(s)	36, 170
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	2 cut(s)	146, 367
RsaNI	GTAC	2 cut(s)	145, 366
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	2 cut(s)	119, 315
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	2 cut(s)	36, 170
ScaI	AGTACT	2 cut(s)	146, 367
SchI	GAGTC	1 cut(s)	350
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	5 cut(s)	27, 114, 201, 262, 289
Sfr274I	CTCGAG	1 cut(s)	68
SlaI	CTCGAG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	5 cut(s)	208, 216, 220, 302, 371
SsiI	CCGC	4 cut(s)	55, 118, 121, 314
SstI	GAGCTC	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	318
TaqI	TCGA	2 cut(s)	69, 149
TasI	AATT	5 cut(s)	208, 216, 220, 302, 371
TatI	WGTACW	2 cut(s)	144, 365
TauI	GCSGC	2 cut(s)	121, 317
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	97
VspI	ATTAAT	1 cut(s)	219
XapI	RAATTY	1 cut(s)	302
XhoI	CTCGAG	1 cut(s)	68
XmnI	GAANNNNTTC	2 cut(s)	155, 220
ZrmI	AGTACT	2 cut(s)	146, 367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.