Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0010618

Physical Location & Seq

Genomic Coordinates Forward (+)

27825440 .. 27827142

Gene Structure 1703 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0159500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGATATTGTCAAAGTTGGATTACTTGAGAGTTGAGACGCAAGAAACCAAAATTTTTGAATTTTGGAAGACTATTAAAGATGGAATTGCATTGCCTTTGATGATTGATCTTTGCTCAGAGGCGGGGTTGCCGTCTCCGCCCTGCCGTATGAGTCTTCCTCCGGAGCTCAAGGCCAAGATTTTGAAGTCACTGTGTGGTGTTCATATTGCAAAAGTTGAATGTACCTGCAGGGGGCTGCGACAATTAGGCAATGACGATGAGTTGAGGTGGAACAAGTTATCGTATGAGTTTCCGGGGTCGTGGAATGAGGATGATAATGACGATATGGTAGGGGGAACGAAAACGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004462 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005829 GO:0005886 GO:0006081 GO:0006082 GO:0006089 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009438 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016151 GO:0016829 GO:0016846 GO:0019243 GO:0019752 GO:0019863 GO:0019865 GO:0031967 GO:0031975 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046185 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051596 GO:0061727 GO:0071704 GO:0071944 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

115

Amino Acids

13.02

Weight (kDa)

5.16

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010618)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110191 RchiOBHm_Chr4g0413001
rosa_laevigata	RLG00000009902 RLG00000022903
rosa_multiflora	Rmu_sc0020732.1_g000002
rosa_roxburghii	Rroxscaffold_4G00303600
rosa_rugosa	Rorug04G0159500 Rorug05G0176000 Rorug06G0078000
rosa_samantha	Rh2AG218600 Rh2AG399700 Rh2BG092100 Rh2BG408500 Rh2DG224500 Rh4AG177000 Rh4CG187900 Rh6BG398900 Rh7AG001300 Rh7CG001100 Rh7CG452500 Rh7DG001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	233
AccIII	TCCGGA	1 cut(s)	160
AciI	CCGC	2 cut(s)	122, 137
AcsI	RAATTY	2 cut(s)	51, 59
AdeI	CACNNNGTG	1 cut(s)	194
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	3 cut(s)	59, 184, 218
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	2 cut(s)	29, 138
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	1 cut(s)	171
ApeKI	GCWGC	1 cut(s)	235
ApoI	RAATTY	2 cut(s)	51, 59
AsuC2I	CCSGG	1 cut(s)	294
BanII	GRGCYC	1 cut(s)	168
BbsI	GAAGAC	2 cut(s)	74, 146
Bbv12I	GWGCWC	1 cut(s)	168
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	1 cut(s)	74
BceAI	ACGGC	2 cut(s)	115, 129
BcnI	CCSGG	1 cut(s)	294
BcoDI	GTCTC	2 cut(s)	29, 138
BfmI	CTRYAG	1 cut(s)	226
BfuAI	ACCTGC	1 cut(s)	233
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	294
BpiI	GAAGAC	2 cut(s)	74, 146
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpuEI	CTTGAG	2 cut(s)	46, 152
BpuMI	CCSGG	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	293
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse3DI	GCAATG	2 cut(s)	89, 256
BseAI	TCCGGA	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	293
BseGI	GGATG	1 cut(s)	316
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	2 cut(s)	89, 256
BseMII	CTCAG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	222
BshFI	GGCC	1 cut(s)	173
BsiHKAI	GWGCWC	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	161, 293
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	2 cut(s)	29, 138
BsmBI	CGTCTC	2 cut(s)	29, 138
BsnI	GGCC	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	2 cut(s)	122, 137
BspANI	GGCC	1 cut(s)	173
BspCNI	CTCAG	1 cut(s)	128
BspEI	TCCGGA	1 cut(s)	160
BspMAI	CTGCAG	1 cut(s)	230
BspMI	ACCTGC	1 cut(s)	233
BsrDI	GCAATG	2 cut(s)	89, 256
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	316
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	2 cut(s)	29, 138
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	292
BstSFI	CTRYAG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	222
BstV2I	GAAGAC	2 cut(s)	74, 146
BsuRI	GGCC	1 cut(s)	173
BtsCI	GGATG	1 cut(s)	316
BtsIMutI	CAGTG	1 cut(s)	188
BveI	ACCTGC	1 cut(s)	233
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	222
CviJI	RGCY	3 cut(s)	166, 173, 235
CviKI_1	RGCY	3 cut(s)	166, 173, 235
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	1 cut(s)	115
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
DraIII	CACNNNGTG	1 cut(s)	194
EciI	GGCGGA	1 cut(s)	126
Ecl136II	GAGCTC	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	168
Eco53kI	GAGCTC	1 cut(s)	166
EcoICRI	GAGCTC	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	168
Esp3I	CGTCTC	2 cut(s)	29, 138
FaiI	YATR	4 cut(s)	149, 204, 285, 326
FauI	CCCGC	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	1 cut(s)	323
FriOI	GRGCYC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	236
GluI	GCNGC	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	173
HapII	CCGG	2 cut(s)	161, 293
HgaI	GACGC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	2 cut(s)	161, 293
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	161
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	344
HpyCH4V	TGCA	3 cut(s)	89, 209, 228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	136
HpyF3I	CTNAG	1 cut(s)	115
HpySE526I	ACGT	1 cut(s)	344
Kpn2I	TCCGGA	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	5 cut(s)	154, 174, 214, 238, 306
Lsp1109I	GCAGC	1 cut(s)	222
MaeII	ACGT	1 cut(s)	344
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	2 cut(s)	79, 146
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	4 cut(s)	51, 59, 84, 242
MlyI	GAGTC	1 cut(s)	160
MnlI	CCTC	4 cut(s)	112, 168, 258, 301
MroI	TCCGGA	1 cut(s)	160
MseI	TTAA	1 cut(s)	75
MspI	CCGG	2 cut(s)	161, 293
MspR9I	CCNGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	1 cut(s)	136
NciI	CCSGG	1 cut(s)	294
NdeII	GATC	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	237
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
Psp124BI	GAGCTC	1 cut(s)	168
PstI	CTGCAG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
SacI	GAGCTC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	1 cut(s)	106
SbfI	CCTGCAGG	1 cut(s)	230
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	294
SdaI	CCTGCAGG	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	168
SetI	ASST	4 cut(s)	168, 227, 269, 347
SfcI	CTRYAG	1 cut(s)	226
SmlI	CTYRAG	2 cut(s)	25, 167
SmoI	CTYRAG	2 cut(s)	25, 167
Sse8387I	CCTGCAGG	1 cut(s)	230
Sse9I	AATT	4 cut(s)	51, 59, 84, 242
SsiI	CCGC	2 cut(s)	122, 137
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	292
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	1 cut(s)	347
TasI	AATT	4 cut(s)	51, 59, 84, 242
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	186
TseI	GCWGC	1 cut(s)	235
Tsp45I	GTSAC	1 cut(s)	186
TspDTI	ATGAA	1 cut(s)	191
TspRI	CASTG	1 cut(s)	195
XapI	RAATTY	2 cut(s)	51, 59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.