Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010618

Physical Location & Seq

Genomic Coordinates Reverse (-)

14729303 .. 14730281

Gene Structure 979 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022903

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGCGGAGGCGGGCAACGGTGGGCAACGATGAGGAAGGTGAAGGTGAAGGTGAAGGTGAAGGTGAAGGGAGGAAGAATCGTGGGCAGATCCAACAGCTCCCTTTCACTCTAATGAATCGGACAATAGAAGAAGAAATTGATGAGGATATTTGTCACTCCGGATCTTATGGAATAGCCCAAGAAGGACAAGCGCTGCCTCCTCCATGCCGTGTACTGCATCGAAGAGCTTGGAGGAAAGATAACAAGAGAGTAGACTATGAGCCCTCGGATCTGGATAATCTTTACGCTGAAGGTGTTACTTCATCTATCGGGCTAGCTTGTGTAGACTTCTCATTTCCACCGTCGGCATCTGAAGATAACATCAATAATAATAATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001664 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0004857 GO:0005095 GO:0005102 GO:0005488 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005834 GO:0005886 GO:0007154 GO:0007165 GO:0007186 GO:0007187 GO:0007188 GO:0008150 GO:0009898 GO:0009987 GO:0016020 GO:0016247 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019897 GO:0019898 GO:0023052 GO:0030234 GO:0030695 GO:0031234 GO:0031683 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032991 GO:0034260 GO:0035639 GO:0036094 GO:0043086 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0044877 GO:0048519 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051346 GO:0051716 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0097159 GO:0097367 GO:0098552 GO:0098562 GO:0098772 GO:0098796 GO:0098797 GO:1901265 GO:1901363 GO:1902494 GO:1905360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-alpha

Protein Analysis

127

Amino Acids

14.05

Weight (kDa)

4.59

Isoelectric Point (pI)

64.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010618)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110191 RchiOBHm_Chr4g0413001
rosa_laevigata	RLG00000009902 RLG00000022903
rosa_multiflora	Rmu_sc0020732.1_g000002
rosa_roxburghii	Rroxscaffold_4G00303600
rosa_rugosa	Rorug04G0159500 Rorug05G0176000 Rorug06G0078000
rosa_samantha	Rh2AG218600 Rh2AG399700 Rh2BG092100 Rh2BG408500 Rh2DG224500 Rh4AG177000 Rh4CG187900 Rh6BG398900 Rh7AG001300 Rh7CG001100 Rh7CG452500 Rh7DG001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	252, 324
AccIII	TCCGGA	1 cut(s)	158
AciI	CCGC	2 cut(s)	4, 10
AclWI	GGATC	3 cut(s)	82, 169, 276
AcuI	CTGAAG	2 cut(s)	309, 372
AfaI	GTAC	1 cut(s)	213
AfeI	AGCGCT	1 cut(s)	192
AluBI	AGCT	3 cut(s)	97, 227, 317
AluI	AGCT	3 cut(s)	97, 227, 317
AlwI	GGATC	3 cut(s)	82, 169, 276
Aor13HI	TCCGGA	1 cut(s)	158
Aor51HI	AGCGCT	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	193
AspLEI	GCGC	1 cut(s)	193
AsuHPI	GGTGA	5 cut(s)	50, 56, 62, 68, 74
AsuNHI	GCTAGC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	264
BbvI	GCAGC	1 cut(s)	180
BceAI	ACGGC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	314
BfoI	RGCGCY	1 cut(s)	194
BisI	GCNGC	1 cut(s)	194
BlsI	GCNGC	1 cut(s)	195
BmsI	GCATC	2 cut(s)	226, 356
BmtI	GCTAGC	1 cut(s)	317
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	1 cut(s)	158
BseAI	TCCGGA	1 cut(s)	158
BseDI	CCNNGG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp13I	TCCGGA	1 cut(s)	158
Bsp143I	GATC	3 cut(s)	87, 161, 268
BspACI	CCGC	2 cut(s)	4, 10
BspEI	TCCGGA	1 cut(s)	158
BspOI	GCTAGC	1 cut(s)	317
BspPI	GGATC	3 cut(s)	82, 169, 276
BspQI	GCTCTTC	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	3 cut(s)	87, 161, 268
Bst4CI	ACNGT	2 cut(s)	19, 342
Bst6I	CTCTTC	1 cut(s)	217
BstC8I	GCNNGC	2 cut(s)	12, 315
BstH2I	RGCGCY	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	193
BstKTI	GATC	3 cut(s)	90, 164, 271
BstMBI	GATC	3 cut(s)	87, 161, 268
BstV1I	GCAGC	1 cut(s)	180
BstX2I	RGATCY	3 cut(s)	87, 161, 268
BstYI	RGATCY	3 cut(s)	87, 161, 268
Cac8I	GCNNGC	2 cut(s)	12, 315
CfoI	GCGC	1 cut(s)	193
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	1 cut(s)	204
CviJI	RGCY	6 cut(s)	97, 176, 227, 262, 313, 317
CviKI_1	RGCY	6 cut(s)	97, 176, 227, 262, 313, 317
CviQI	GTAC	1 cut(s)	212
DpnI	GATC	3 cut(s)	89, 163, 270
DpnII	GATC	3 cut(s)	87, 161, 268
Eam1104I	CTCTTC	1 cut(s)	217
EarI	CTCTTC	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	264
Eco47III	AGCGCT	1 cut(s)	192
Eco57I	CTGAAG	2 cut(s)	309, 372
EcoT38I	GRGCYC	1 cut(s)	264
FaeI	CATG	1 cut(s)	207
FaiI	YATR	3 cut(s)	168, 205, 258
FatI	CATG	1 cut(s)	203
FauI	CCCGC	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	252, 324
Fnu4HI	GCNGC	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	1 cut(s)	194
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	192
GluI	GCNGC	1 cut(s)	194
HaeII	RGCGCY	1 cut(s)	194
HapII	CCGG	1 cut(s)	159
HhaI	GCGC	1 cut(s)	193
Hin1II	CATG	1 cut(s)	207
Hin6I	GCGC	1 cut(s)	191
HinP1I	GCGC	1 cut(s)	191
HinfI	GANTC	2 cut(s)	76, 115
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	5 cut(s)	50, 56, 62, 68, 74
Hpy166II	GTNNAC	3 cut(s)	212, 253, 325
Hpy188I	TCNGA	3 cut(s)	120, 268, 352
Hpy188III	TCNNGA	2 cut(s)	159, 272
Hpy8I	GTNNAC	3 cut(s)	212, 253, 325
Hpy99I	CGWCG	1 cut(s)	346
HpyAV	CCTTC	8 cut(s)	29, 35, 41, 47, 53, 59, 176, 284
HpyCH4III	ACNGT	2 cut(s)	19, 342
HpyCH4V	TGCA	1 cut(s)	217
Hsp92II	CATG	1 cut(s)	207
HspAI	GCGC	1 cut(s)	191
Kpn2I	TCCGGA	1 cut(s)	158
Kzo9I	GATC	3 cut(s)	87, 161, 268
LguI	GCTCTTC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	102
LpnPI	CCDG	2 cut(s)	172, 257
Lsp1109I	GCAGC	1 cut(s)	180
LweI	GCATC	2 cut(s)	226, 356
MaeI	CTAG	1 cut(s)	314
MaeIII	GTNAC	2 cut(s)	152, 295
MalI	GATC	3 cut(s)	89, 163, 270
MboI	GATC	3 cut(s)	87, 161, 268
MboII	GAAGA	5 cut(s)	85, 140, 143, 234, 365
MflI	RGATCY	3 cut(s)	87, 161, 268
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	1 cut(s)	135
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	7 cut(s)	25, 63, 136, 207, 210, 225, 274
MroI	TCCGGA	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	110
MspI	CCGG	1 cut(s)	159
NdeII	GATC	3 cut(s)	87, 161, 268
NheI	GCTAGC	1 cut(s)	313
NlaIII	CATG	1 cut(s)	207
NmuCI	GTSAC	1 cut(s)	152
PciSI	GCTCTTC	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	76, 115
PkrI	GCNGC	1 cut(s)	195
PsuI	RGATCY	3 cut(s)	87, 161, 268
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	110
SapI	GCTCTTC	1 cut(s)	217
SatI	GCNGC	1 cut(s)	194
Sau3AI	GATC	3 cut(s)	87, 161, 268
SduI	GDGCHC	1 cut(s)	264
SetI	ASST	9 cut(s)	40, 46, 52, 58, 64, 99, 229, 295, 319
SfaNI	GCATC	2 cut(s)	226, 356
SmiMI	CAYNNNNRTG	1 cut(s)	110
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	2 cut(s)	4, 10
SspMI	CTAG	1 cut(s)	314
TaaI	ACNGT	2 cut(s)	19, 342
TaqI	TCGA	1 cut(s)	220
TasI	AATT	1 cut(s)	135
TatI	WGTACW	1 cut(s)	211
TfiI	GAWTC	2 cut(s)	76, 115
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	152
TspDTI	ATGAA	2 cut(s)	128, 291
XmiI	GTMKAC	2 cut(s)	252, 324
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.