Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0010618

Physical Location & Seq

Genomic Coordinates Reverse (-)

170003 .. 170212

Gene Structure 210 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG001300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGAGGATATTCATCGCTTCGGAGCTTCTTCAATTGCCCAAGAAGGACAAGCACTGCCTCCTCCACACCGTGTACCCCGTCGACGATCTCGAGCGCACCATCAAGTTTTACACCAAGGCTCTTGGGATGAAGCTATTGCGGCATAGGATATTCCGGAAGAGATGTACTCGAATGCTTTCCTCGGGAGGCCGGAAGAAACGAACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004462 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005829 GO:0005886 GO:0006081 GO:0006082 GO:0006089 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009438 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016151 GO:0016829 GO:0016846 GO:0019243 GO:0019752 GO:0019863 GO:0019865 GO:0031967 GO:0031975 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046185 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051596 GO:0061727 GO:0071704 GO:0071944 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

69

Amino Acids

8.26

Weight (kDa)

10.8

Isoelectric Point (pI)

46.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	20 - 48	1.6e-07	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010618)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110191 RchiOBHm_Chr4g0413001
rosa_laevigata	RLG00000009902 RLG00000022903
rosa_multiflora	Rmu_sc0020732.1_g000002
rosa_roxburghii	Rroxscaffold_4G00303600
rosa_rugosa	Rorug04G0159500 Rorug05G0176000 Rorug06G0078000
rosa_samantha	Rh2AG218600 Rh2AG399700 Rh2BG092100 Rh2BG408500 Rh2DG224500 Rh4AG177000 Rh4CG187900 Rh6BG398900 Rh7AG001300 Rh7CG001100 Rh7CG452500 Rh7DG001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	81
AccIII	TCCGGA	1 cut(s)	153
AciI	CCGC	1 cut(s)	139
AdeI	CACNNNGTG	1 cut(s)	70
AfaI	GTAC	2 cut(s)	74, 166
AgsI	TTSAA	1 cut(s)	32
AluBI	AGCT	2 cut(s)	25, 133
AluI	AGCT	2 cut(s)	25, 133
Ama87I	CYCGRG	2 cut(s)	89, 181
Aor13HI	TCCGGA	1 cut(s)	153
AoxI	GGCC	1 cut(s)	187
Asp700I	GAANNNNTTC	1 cut(s)	175
AspLEI	GCGC	1 cut(s)	96
AvaI	CYCGRG	2 cut(s)	89, 181
BccI	CCATC	1 cut(s)	107
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
BmeT110I	CYCGRG	2 cut(s)	89, 181
BplI	GAGNNNNNCTC	2 cut(s)	151, 183
BsaBI	GATNNNNATC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	114, 180
BsaWI	WCCGGW	1 cut(s)	153
Bse8I	GATNNNNATC	1 cut(s)	11
BseAI	TCCGGA	1 cut(s)	153
BseDI	CCNNGG	2 cut(s)	114, 180
BseGI	GGATG	1 cut(s)	132
BseJI	GATNNNNATC	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	189
BsiHKCI	CYCGRG	2 cut(s)	89, 181
BsiSI	CCGG	2 cut(s)	154, 190
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	189
BsoBI	CYCGRG	2 cut(s)	89, 181
Bsp13I	TCCGGA	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	85
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	1 cut(s)	189
BspEI	TCCGGA	1 cut(s)	153
BssECI	CCNNGG	2 cut(s)	114, 180
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	132
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	52
CfoI	GCGC	1 cut(s)	96
Csp6I	GTAC	2 cut(s)	73, 165
CviJI	RGCY	4 cut(s)	25, 119, 133, 189
CviKI_1	RGCY	4 cut(s)	25, 119, 133, 189
CviQI	GTAC	2 cut(s)	73, 165
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
DraIII	CACNNNGTG	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	114
Eco88I	CYCGRG	2 cut(s)	89, 181
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
FaiI	YATR	1 cut(s)	144
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	1 cut(s)	140
FokI	GGATG	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	140
GlaI	GCGC	1 cut(s)	95
GluI	GCNGC	1 cut(s)	140
HaeIII	GGCC	1 cut(s)	189
HapII	CCGG	2 cut(s)	154, 190
HhaI	GCGC	1 cut(s)	96
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HpaII	CCGG	2 cut(s)	154, 190
Hpy166II	GTNNAC	2 cut(s)	73, 82
Hpy188I	TCNGA	1 cut(s)	22
Hpy188III	TCNNGA	3 cut(s)	89, 154, 183
Hpy8I	GTNNAC	2 cut(s)	73, 82
Hpy99I	CGWCG	2 cut(s)	83, 86
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	1 cut(s)	70
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HspAI	GCGC	1 cut(s)	94
Kpn2I	TCCGGA	1 cut(s)	153
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	2 cut(s)	167, 203
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	3 cut(s)	20, 169, 205
MfeI	CAATTG	1 cut(s)	32
MluCI	AATT	1 cut(s)	32
MnlI	CCTC	4 cut(s)	68, 71, 179, 190
MroI	TCCGGA	1 cut(s)	153
MroXI	GAANNNNTTC	1 cut(s)	175
MspI	CCGG	2 cut(s)	154, 190
MunI	CAATTG	1 cut(s)	32
Mva1269I	GAATGC	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeII	GATC	1 cut(s)	85
PaeR7I	CTCGAG	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PctI	GAATGC	1 cut(s)	177
PdmI	GAANNNNTTC	1 cut(s)	175
PkrI	GCNGC	1 cut(s)	141
RsaI	GTAC	2 cut(s)	74, 166
RsaNI	GTAC	2 cut(s)	73, 165
SalI	GTCGAC	1 cut(s)	80
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	1 cut(s)	85
SetI	ASST	2 cut(s)	27, 135
Sfr274I	CTCGAG	1 cut(s)	89
SgrDI	CGTCGACG	1 cut(s)	80
SlaI	CTCGAG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	32
SsiI	CCGC	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	3 cut(s)	81, 90, 169
TasI	AATT	1 cut(s)	32
TatI	WGTACW	1 cut(s)	164
TauI	GCSGC	1 cut(s)	142
TscAI	CASTG	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	143
TspRI	CASTG	1 cut(s)	59
XhoI	CTCGAG	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	81
XmnI	GAANNNNTTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.