Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0010618

Physical Location & Seq

Genomic Coordinates Forward (+)

40609218 .. 40609652

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG187900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCGGAGGCGGGCGACAGCGAGCGACGATGATGAAGGTGAAAGTGAGGGGAGGAAGAATAGTGGGCAGATCCAACGGCTCCCATTCACTGTGATGAATCGGATGATAGAAGAAGAAATTGATGAGGATATTCGTCACTTCGGAGCTTCAGAGCTTCTGGAATTGCCCAAGAAGGACAAGCGCCACCTCCTCCACACCGTGTACCGCGTCGGGGATCTCGACCGCACCATCAAGTTTTACATTGAGGCTCTTGGGTTGAAGCTGTTGCGGCAGAGGGACATTCCGAAAGAGAAGTACTCGAATGCTTTCCTCGAATTCGGGCTGGAAGAAACGAACTTTGTAATGGAGCTCACTTTCAATTATGGAGTAATTCCTATGATATTGGGATTGAGTTTGGTCACAAAAGAGCTTGGAGGAAAGATAACAAGAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004462 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005829 GO:0005886 GO:0006081 GO:0006082 GO:0006089 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009438 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016151 GO:0016829 GO:0016846 GO:0019243 GO:0019752 GO:0019863 GO:0019865 GO:0031967 GO:0031975 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046185 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051596 GO:0061727 GO:0071704 GO:0071944 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

144

Amino Acids

16.73

Weight (kDa)

5.73

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	63 - 102	2.2e-07	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010618)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110191 RchiOBHm_Chr4g0413001
rosa_laevigata	RLG00000009902 RLG00000022903
rosa_multiflora	Rmu_sc0020732.1_g000002
rosa_roxburghii	Rroxscaffold_4G00303600
rosa_rugosa	Rorug04G0159500 Rorug05G0176000 Rorug06G0078000
rosa_samantha	Rh2AG218600 Rh2AG399700 Rh2BG092100 Rh2BG408500 Rh2DG224500 Rh4AG177000 Rh4CG187900 Rh6BG398900 Rh7AG001300 Rh7CG001100 Rh7CG452500 Rh7DG001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	207
AciI	CCGC	5 cut(s)	4, 10, 205, 223, 268
AclWI	GGATC	2 cut(s)	64, 222
AcsI	RAATTY	1 cut(s)	314
AcuI	CTGAAG	1 cut(s)	132
AdeI	CACNNNGTG	1 cut(s)	199
AfaI	GTAC	2 cut(s)	203, 296
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	2 cut(s)	259, 358
AluBI	AGCT	5 cut(s)	146, 154, 262, 349, 409
AluI	AGCT	5 cut(s)	146, 154, 262, 349, 409
Alw21I	GWGCWC	1 cut(s)	351
AlwI	GGATC	2 cut(s)	64, 222
ApoI	RAATTY	1 cut(s)	314
Asp700I	GAANNNNTTC	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	183
AsuHPI	GGTGA	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	351
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	1 cut(s)	92
BfoI	RGCGCY	1 cut(s)	184
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
BmcAI	AGTACT	1 cut(s)	296
BmiI	GGNNCC	1 cut(s)	80
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	179
Bsh1236I	CGCG	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	223
BsiEI	CGRYCG	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	351
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	2 cut(s)	69, 214
BspACI	CCGC	5 cut(s)	4, 10, 205, 223, 268
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	80
BspPI	GGATC	2 cut(s)	64, 222
BssMI	GATC	2 cut(s)	69, 214
Bst4CI	ACNGT	2 cut(s)	91, 199
BstC8I	GCNNGC	2 cut(s)	12, 22
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	2 cut(s)	72, 217
BstMBI	GATC	2 cut(s)	69, 214
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	268
BstUI	CGCG	1 cut(s)	207
BstX2I	RGATCY	2 cut(s)	69, 214
BstYI	RGATCY	2 cut(s)	69, 214
BtsCI	GGATG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	87
Cac8I	GCNNGC	2 cut(s)	12, 22
CfoI	GCGC	1 cut(s)	183
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	202, 295
CviJI	RGCY	8 cut(s)	79, 146, 154, 248, 262, 322, 349, 409
CviKI_1	RGCY	8 cut(s)	79, 146, 154, 248, 262, 322, 349, 409
CviQI	GTAC	2 cut(s)	202, 295
DpnI	GATC	2 cut(s)	71, 216
DpnII	GATC	2 cut(s)	69, 214
DraIII	CACNNNGTG	1 cut(s)	199
Ecl136II	GAGCTC	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	132
EcoICRI	GAGCTC	1 cut(s)	349
EcoRI	GAATTC	1 cut(s)	314
EcoT38I	GRGCYC	1 cut(s)	351
FaiI	YATR	2 cut(s)	363, 377
FaqI	GGGAC	1 cut(s)	290
FauI	CCCGC	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	1 cut(s)	115
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	1 cut(s)	269
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	1 cut(s)	269
HaeII	RGCGCY	1 cut(s)	184
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	1 cut(s)	183
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HinfI	GANTC	1 cut(s)	97
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	4 cut(s)	102, 143, 151, 285
Hpy188III	TCNNGA	2 cut(s)	158, 218
Hpy8I	GTNNAC	1 cut(s)	202
Hpy99I	CGWCG	2 cut(s)	29, 212
HpyAV	CCTTC	2 cut(s)	29, 166
HpyCH4III	ACNGT	2 cut(s)	91, 199
HpyF10VI	GCNNNNNNNGC	1 cut(s)	268
HspAI	GCGC	1 cut(s)	181
Kzo9I	GATC	2 cut(s)	69, 214
LmnI	GCTCC	3 cut(s)	84, 143, 346
LpnPI	CCDG	2 cut(s)	143, 308
MaeIII	GTNAC	2 cut(s)	134, 397
MalI	GATC	2 cut(s)	71, 216
MboI	GATC	2 cut(s)	69, 214
MboII	GAAGA	4 cut(s)	67, 122, 125, 338
MflI	RGATCY	2 cut(s)	69, 214
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	5 cut(s)	117, 161, 314, 358, 369
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	9 cut(s)	40, 45, 118, 197, 200, 238, 267, 320, 407
MroXI	GAANNNNTTC	1 cut(s)	305
MslI	CAYNNNNRTG	1 cut(s)	92
Mva1269I	GAATGC	1 cut(s)	307
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	268
NdeII	GATC	2 cut(s)	69, 214
NlaIV	GGNNCC	1 cut(s)	80
NmuCI	GTSAC	2 cut(s)	134, 397
PcsI	WCGNNNNNNNCGW	1 cut(s)	216
PctI	GAATGC	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	97
PkrI	GCNGC	1 cut(s)	270
Psp124BI	GAGCTC	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	80
PsuI	RGATCY	2 cut(s)	69, 214
RsaI	GTAC	2 cut(s)	203, 296
RsaNI	GTAC	2 cut(s)	202, 295
RseI	CAYNNNNRTG	1 cut(s)	92
SacI	GAGCTC	1 cut(s)	351
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	2 cut(s)	69, 214
ScaI	AGTACT	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	7 cut(s)	40, 148, 156, 189, 264, 351, 411
SmiMI	CAYNNNNRTG	1 cut(s)	92
Sse9I	AATT	5 cut(s)	117, 161, 314, 358, 369
SsiI	CCGC	5 cut(s)	4, 10, 205, 223, 268
SstI	GAGCTC	1 cut(s)	351
TaaI	ACNGT	2 cut(s)	91, 199
TaqI	TCGA	3 cut(s)	219, 299, 312
TasI	AATT	5 cut(s)	117, 161, 314, 358, 369
TatI	WGTACW	1 cut(s)	294
TauI	GCSGC	1 cut(s)	271
TfiI	GAWTC	1 cut(s)	97
TscAI	CASTG	1 cut(s)	94
TseFI	GTSAC	2 cut(s)	134, 397
Tsp45I	GTSAC	2 cut(s)	134, 397
TspDTI	ATGAA	2 cut(s)	48, 110
TspRI	CASTG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	305
ZrmI	AGTACT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.