Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0010618

Physical Location & Seq

Genomic Coordinates Forward (+)

44420499 .. 44443749

Gene Structure 23251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG177000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGCGGAGGCGGGCGGCGGCGAGCGACGATGATGAAGGTGAAAGTGAGGGGAGGAAGAATCGTGGGCAGATCCAACGGCTCCCATTCACTCTGATGAATCGGACGATAGAAGAAGAAATTGATGAGGATATTCGTCACTTCAGAGCTTCAGAGCTTCTGGAATTGCCCAAGAAGGACAAGCACCACCTCTTCCACACCGTGTACCGCGTTGGGGATCTCGACCGCACCATCAAGTTTTACACTGAGGCTCTTGGGTTGAAGCTGTTGCGGCAGAGGGACATTCCGGAAGAGAAGTACTCGAATGCTTTCCTCGGATTCAGGCTGGAAGAAACGAACTTTGTAATGGAGCTCACTTTCAATTATGGAGTAATTCCTATGATATTGGGATTGGGTTTGGTCACAAAAGAGCTTGGAGGAAAGATAACAAGAGAGTACGTAAAGGACTGGGAAAATTTCTGGTCGCAGACATGGAGGAAGAGAGGGAGAGTATCAAAGTCAGAAAGAGGTAGATATATGGTGCCTGTTGGAGTGCTGAAGAGACATTCTACACCTCAGGATGTTTGCCAAGATTTTGCACCATTGGCAAAGAATGATGGAAGCAGTAGCTTTCAAATTAAGACATTTGCAAATGCCATAGCAGGCATATCTCAATGCAATTCTTCTCATATACCTGTGTACTCACGAGGTCATGAAGCAAGCAGAAAATACTACAATGATTGCTCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004462 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005829 GO:0005886 GO:0006081 GO:0006082 GO:0006089 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009438 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016151 GO:0016829 GO:0016846 GO:0019243 GO:0019752 GO:0019863 GO:0019865 GO:0031967 GO:0031975 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046185 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051596 GO:0061727 GO:0071704 GO:0071944 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

242

Amino Acids

28.09

Weight (kDa)

8.87

Isoelectric Point (pI)

42.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	63 - 103	5.6e-08	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010618)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110191 RchiOBHm_Chr4g0413001
rosa_laevigata	RLG00000009902 RLG00000022903
rosa_multiflora	Rmu_sc0020732.1_g000002
rosa_roxburghii	Rroxscaffold_4G00303600
rosa_rugosa	Rorug04G0159500 Rorug05G0176000 Rorug06G0078000
rosa_samantha	Rh2AG218600 Rh2AG399700 Rh2BG092100 Rh2BG408500 Rh2DG224500 Rh4AG177000 Rh4CG187900 Rh6BG398900 Rh7AG001300 Rh7CG001100 Rh7CG452500 Rh7DG001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	517
AccII	CGCG	1 cut(s)	207
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	7 cut(s)	4, 10, 14, 17, 205, 223, 268
AclWI	GGATC	2 cut(s)	64, 222
AcsI	RAATTY	1 cut(s)	451
AcuI	CTGAAG	3 cut(s)	124, 132, 554
AdeI	CACNNNGTG	1 cut(s)	199
AfaI	GTAC	4 cut(s)	203, 296, 434, 677
AfiI	CCNNNNNNNGG	1 cut(s)	211
AgsI	TTSAA	3 cut(s)	259, 358, 611
AluBI	AGCT	6 cut(s)	146, 154, 262, 349, 409, 606
AluI	AGCT	6 cut(s)	146, 154, 262, 349, 409, 606
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	532
AlwI	GGATC	2 cut(s)	64, 222
Aor13HI	TCCGGA	1 cut(s)	283
ApoI	RAATTY	1 cut(s)	451
Asp700I	GAANNNNTTC	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	50
AxyI	CCTNAGG	1 cut(s)	552
BanI	GGYRCC	1 cut(s)	517
BanII	GRGCYC	1 cut(s)	351
BauI	CACGAG	1 cut(s)	681
Bbv12I	GWGCWC	1 cut(s)	351
BccI	CCATC	2 cut(s)	236, 587
BceAI	ACGGC	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	532
BisI	GCNGC	3 cut(s)	15, 18, 269
BlsI	GCNGC	3 cut(s)	16, 19, 270
BmcAI	AGTACT	1 cut(s)	296
BmiI	GGNNCC	2 cut(s)	80, 519
BmrI	ACTGGG	1 cut(s)	454
BmuI	ACTGGG	1 cut(s)	454
BplI	GAGNNNNNCTC	2 cut(s)	281, 313
BsaAI	YACGTR	1 cut(s)	436
BsaJI	CCNNGG	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	283
Bsc4I	CCNNNNNNNGG	1 cut(s)	211
Bse1I	ACTGG	1 cut(s)	449
Bse21I	CCTNAGG	1 cut(s)	552
BseAI	TCCGGA	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	1 cut(s)	211
BseMII	CTCAG	2 cut(s)	234, 566
BseNI	ACTGG	1 cut(s)	449
Bsh1236I	CGCG	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	223
BshNI	GGYRCC	1 cut(s)	517
BsiEI	CGRYCG	1 cut(s)	223
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	284
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	211
BsmAI	GTCTC	1 cut(s)	532
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp13I	TCCGGA	1 cut(s)	283
Bsp143I	GATC	2 cut(s)	69, 214
BspACI	CCGC	7 cut(s)	4, 10, 14, 17, 205, 223, 268
BspCNI	CTCAG	2 cut(s)	235, 565
BspEI	TCCGGA	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	688
BspLI	GGNNCC	2 cut(s)	80, 519
BspPI	GGATC	2 cut(s)	64, 222
BspT107I	GGYRCC	1 cut(s)	517
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	2 cut(s)	69, 214
BssSI	CACGAG	1 cut(s)	681
Bst2BI	CACGAG	1 cut(s)	681
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	4 cut(s)	194, 282, 470, 530
BstBAI	YACGTR	1 cut(s)	436
BstC8I	GCNNGC	4 cut(s)	12, 22, 640, 697
BstDEI	CTNAG	2 cut(s)	243, 552
BstF5I	GGATG	1 cut(s)	562
BstFNI	CGCG	1 cut(s)	207
BstKTI	GATC	2 cut(s)	72, 217
BstMAI	GTCTC	1 cut(s)	532
BstMBI	GATC	2 cut(s)	69, 214
BstMCI	CGRYCG	1 cut(s)	223
BstMWI	GCNNNNNNNGC	2 cut(s)	268, 581
BstSNI	TACGTA	1 cut(s)	436
BstUI	CGCG	1 cut(s)	207
BstX2I	RGATCY	2 cut(s)	69, 214
BstYI	RGATCY	2 cut(s)	69, 214
Bsu36I	CCTNAGG	1 cut(s)	552
BtsCI	GGATG	1 cut(s)	562
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	4 cut(s)	12, 22, 640, 697
CciI	TCATGA	1 cut(s)	688
Csp6I	GTAC	4 cut(s)	202, 295, 433, 676
CviAII	CATG	2 cut(s)	468, 689
CviJI	RGCY	9 cut(s)	79, 146, 154, 248, 262, 322, 349, 409, 606
CviKI_1	RGCY	9 cut(s)	79, 146, 154, 248, 262, 322, 349, 409, 606
CviQI	GTAC	4 cut(s)	202, 295, 433, 676
DdeI	CTNAG	2 cut(s)	243, 552
DpnI	GATC	2 cut(s)	71, 216
DpnII	GATC	2 cut(s)	69, 214
DraIII	CACNNNGTG	1 cut(s)	199
Eam1104I	CTCTTC	4 cut(s)	194, 282, 470, 530
EarI	CTCTTC	4 cut(s)	194, 282, 470, 530
Ecl136II	GAGCTC	1 cut(s)	349
Eco105I	TACGTA	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	349
Eco57I	CTGAAG	3 cut(s)	124, 132, 554
Eco81I	CCTNAGG	1 cut(s)	552
EcoICRI	GAGCTC	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	351
FaeI	CATG	2 cut(s)	471, 692
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	2 cut(s)	467, 688
FauI	CCCGC	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	15, 18, 269
FokI	GGATG	1 cut(s)	569
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	3 cut(s)	15, 18, 269
GluI	GCNGC	3 cut(s)	15, 18, 269
HapII	CCGG	1 cut(s)	284
Hin1II	CATG	2 cut(s)	471, 692
HinfI	GANTC	3 cut(s)	58, 97, 315
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	2 cut(s)	202, 676
Hpy188I	TCNGA	7 cut(s)	93, 102, 143, 151, 314, 499, 724
Hpy188III	TCNNGA	6 cut(s)	158, 218, 284, 554, 681, 689
Hpy8I	GTNNAC	2 cut(s)	202, 676
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	29, 166
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	3 cut(s)	575, 626, 654
HpyF10VI	GCNNNNNNNGC	2 cut(s)	268, 581
HpyF3I	CTNAG	2 cut(s)	243, 552
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	2 cut(s)	471, 692
Kpn2I	TCCGGA	1 cut(s)	283
Kzo9I	GATC	2 cut(s)	69, 214
LmnI	GCTCC	3 cut(s)	84, 346, 725
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	2 cut(s)	134, 397
MalI	GATC	2 cut(s)	71, 216
MboI	GATC	2 cut(s)	69, 214
MboII	GAAGA	9 cut(s)	67, 122, 125, 181, 299, 338, 487, 547, 651
MflI	RGATCY	2 cut(s)	69, 214
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	7 cut(s)	117, 161, 358, 369, 451, 612, 655
MmeI	TCCRAC	2 cut(s)	97, 505
MroI	TCCGGA	1 cut(s)	283
MroXI	GAANNNNTTC	1 cut(s)	305
MseI	TTAA	1 cut(s)	615
MslI	CAYNNNNRTG	1 cut(s)	92
MspI	CCGG	1 cut(s)	284
Mva1269I	GAATGC	1 cut(s)	307
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	268, 581
NdeII	GATC	2 cut(s)	69, 214
NlaIII	CATG	2 cut(s)	471, 692
NlaIV	GGNNCC	2 cut(s)	80, 519
NmuCI	GTSAC	2 cut(s)	134, 397
PagI	TCATGA	1 cut(s)	688
PctI	GAATGC	1 cut(s)	307
PdmI	GAANNNNTTC	1 cut(s)	305
PfeI	GAWTC	3 cut(s)	58, 97, 315
PkrI	GCNGC	3 cut(s)	16, 19, 270
Ppu21I	YACGTR	1 cut(s)	436
Psp124BI	GAGCTC	1 cut(s)	351
PspN4I	GGNNCC	2 cut(s)	80, 519
PsuI	RGATCY	2 cut(s)	69, 214
RsaI	GTAC	4 cut(s)	203, 296, 434, 677
RsaNI	GTAC	4 cut(s)	202, 295, 433, 676
RseI	CAYNNNNRTG	1 cut(s)	92
SacI	GAGCTC	1 cut(s)	351
SaqAI	TTAA	1 cut(s)	615
SatI	GCNGC	3 cut(s)	15, 18, 269
Sau3AI	GATC	2 cut(s)	69, 214
ScaI	AGTACT	1 cut(s)	296
SduI	GDGCHC	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	92
SnaBI	TACGTA	1 cut(s)	436
Sse9I	AATT	7 cut(s)	117, 161, 358, 369, 451, 612, 655
SsiI	CCGC	7 cut(s)	4, 10, 14, 17, 205, 223, 268
SstI	GAGCTC	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	2 cut(s)	219, 299
TasI	AATT	7 cut(s)	117, 161, 358, 369, 451, 612, 655
TatI	WGTACW	2 cut(s)	294, 675
TauI	GCSGC	3 cut(s)	17, 20, 271
TfiI	GAWTC	3 cut(s)	58, 97, 315
Tru1I	TTAA	1 cut(s)	615
Tru9I	TTAA	1 cut(s)	615
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	2 cut(s)	134, 397
Tsp45I	GTSAC	2 cut(s)	134, 397
TspDTI	ATGAA	3 cut(s)	48, 110, 705
TspRI	CASTG	1 cut(s)	247
XapI	RAATTY	1 cut(s)	451
XmnI	GAANNNNTTC	1 cut(s)	305
ZrmI	AGTACT	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.