Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0010618

Physical Location & Seq

Genomic Coordinates Reverse (-)

59860927 .. 59861965

Gene Structure 1039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009902

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGCACCCATCTTTCTTCCCCCTCCCAATCTCGATCACCTCTGCAATTCTACAATTCCAACCATTATTGTCAATCAACACCCTTCAATTCTCAAGCTTCTCCGCCATCCAAACCGAACTTTTTAATCTTCAATCTCTCATCCTCACCTCCCATATCTTCTCTCTATTGGGTTCATCTGTTCAAGATCTCCAACCCTGTGAATCTTCTTTCCCTCTTGTTCATTGTGTTCTATATCAAAGGAAAAGCTTTGGCTTCAGGCATGGCTAGCTATCTAAGAAATTCAAAAATTCAAGGTTTCAATTACAACCGCTGGCGATGTGGAGGTAAGCGGCGGCGAGCAATGATGATGAAGGTGAAGAAGAAGAAATTGATGAGGATATTCGTCGCTTTGGAGCTTCTGGAATTGCCCAAGAAGGACAAACGCCGCCTCCTCCACATCGTGTACCGCGTCGGCGATCTCGAGCGCACCATCATGTTTTACACTAAGGCTCTTGGGATGAAGCTGTTGCGGCAGAGGGATATTCCGGAAGATAAGTACTCGAATGCTTTCCTCAGATTCAGGCTGGAAGAAACGAACTTTGTAATGGAGCTCACTTACAATTATGGAGTAATTTCCTATGATATTGGAATTGGGTTTGGTTACAAAAGAGCTTGGAGGAAAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004462 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005829 GO:0005886 GO:0006081 GO:0006082 GO:0006089 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009438 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016151 GO:0016829 GO:0016846 GO:0019243 GO:0019752 GO:0019863 GO:0019865 GO:0031967 GO:0031975 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046185 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051596 GO:0061727 GO:0071704 GO:0071944 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

223

Amino Acids

26.01

Weight (kDa)

10.27

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	143 - 211	1.8e-08	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010618)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110191 RchiOBHm_Chr4g0413001
rosa_laevigata	RLG00000009902 RLG00000022903
rosa_multiflora	Rmu_sc0020732.1_g000002
rosa_roxburghii	Rroxscaffold_4G00303600
rosa_rugosa	Rorug04G0159500 Rorug05G0176000 Rorug06G0078000
rosa_samantha	Rh2AG218600 Rh2AG399700 Rh2BG092100 Rh2BG408500 Rh2DG224500 Rh4AG177000 Rh4CG187900 Rh6BG398900 Rh7AG001300 Rh7CG001100 Rh7CG452500 Rh7DG001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	5
AccII	CGCG	1 cut(s)	450
AccIII	TCCGGA	1 cut(s)	526
AciI	CCGC	7 cut(s)	104, 310, 331, 334, 427, 448, 511
AcsI	RAATTY	2 cut(s)	280, 288
AcuI	CTGAAG	1 cut(s)	240
AdeI	CACNNNGTG	1 cut(s)	442
AfaI	GTAC	2 cut(s)	446, 539
AgsI	TTSAA	6 cut(s)	88, 133, 184, 285, 293, 301
AluBI	AGCT	7 cut(s)	98, 248, 270, 397, 505, 592, 653
AluI	AGCT	7 cut(s)	98, 248, 270, 397, 505, 592, 653
Alw21I	GWGCWC	1 cut(s)	594
Ama87I	CYCGRG	1 cut(s)	461
Aor13HI	TCCGGA	1 cut(s)	526
ApoI	RAATTY	2 cut(s)	280, 288
Asp700I	GAANNNNTTC	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	468
AsuHPI	GGTGA	3 cut(s)	30, 138, 367
AsuNHI	GCTAGC	1 cut(s)	266
AvaI	CYCGRG	1 cut(s)	461
BaeGI	GKGCMC	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	594
Bbv12I	GWGCWC	1 cut(s)	594
BccI	CCATC	3 cut(s)	18, 115, 479
BfaI	CTAG	1 cut(s)	267
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	4 cut(s)	332, 335, 427, 512
BlsI	GCNGC	4 cut(s)	333, 336, 428, 513
BmcAI	AGTACT	1 cut(s)	539
BmeT110I	CYCGRG	1 cut(s)	461
BmiI	GGNNCC	1 cut(s)	7
BmtI	GCTAGC	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	78
BsaWI	WCCGGW	1 cut(s)	526
BsaXI	ACNNNNNCTCC	2 cut(s)	414, 444
Bse3DI	GCAATG	1 cut(s)	348
BseAI	TCCGGA	1 cut(s)	526
BseGI	GGATG	3 cut(s)	107, 140, 504
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	1 cut(s)	568
BseRI	GAGGAG	1 cut(s)	422
BseSI	GKGCMC	1 cut(s)	8
Bsh1236I	CGCG	1 cut(s)	450
BshNI	GGYRCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	594
BsiHKCI	CYCGRG	1 cut(s)	461
BsiSI	CCGG	1 cut(s)	527
BsmI	GAATGC	1 cut(s)	550
BsoBI	CYCGRG	1 cut(s)	461
Bsp1286I	GDGCHC	2 cut(s)	8, 594
Bsp13I	TCCGGA	1 cut(s)	526
Bsp143I	GATC	3 cut(s)	35, 186, 457
BspACI	CCGC	7 cut(s)	104, 310, 331, 334, 427, 448, 511
BspCNI	CTCAG	1 cut(s)	567
BspEI	TCCGGA	1 cut(s)	526
BspFNI	CGCG	1 cut(s)	450
BspLI	GGNNCC	1 cut(s)	7
BspOI	GCTAGC	1 cut(s)	270
BspT107I	GGYRCC	1 cut(s)	5
BsrDI	GCAATG	1 cut(s)	348
BssMI	GATC	3 cut(s)	35, 186, 457
BstC8I	GCNNGC	3 cut(s)	268, 314, 339
BstDEI	CTNAG	3 cut(s)	275, 486, 554
BstF5I	GGATG	3 cut(s)	107, 140, 504
BstFNI	CGCG	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	468
BstKTI	GATC	3 cut(s)	38, 189, 460
BstMBI	GATC	3 cut(s)	35, 186, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	267, 511
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	186
BstYI	RGATCY	1 cut(s)	186
BtgZI	GCGATG	1 cut(s)	331
BtsCI	GGATG	3 cut(s)	107, 140, 504
Cac8I	GCNNGC	3 cut(s)	268, 314, 339
CfoI	GCGC	1 cut(s)	468
CseI	GACGC	1 cut(s)	439
Csp6I	GTAC	2 cut(s)	445, 538
CviAII	CATG	2 cut(s)	262, 475
CviQI	GTAC	2 cut(s)	445, 538
DdeI	CTNAG	3 cut(s)	275, 486, 554
DpnI	GATC	3 cut(s)	37, 188, 459
DpnII	GATC	3 cut(s)	35, 186, 457
DraIII	CACNNNGTG	1 cut(s)	442
EciI	GGCGGA	1 cut(s)	93
Ecl136II	GAGCTC	1 cut(s)	592
Eco24I	GRGCYC	1 cut(s)	594
Eco53kI	GAGCTC	1 cut(s)	592
Eco57I	CTGAAG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	461
EcoICRI	GAGCTC	1 cut(s)	592
EcoT38I	GRGCYC	1 cut(s)	594
FaeI	CATG	2 cut(s)	265, 478
FaiI	YATR	6 cut(s)	155, 234, 263, 476, 606, 621
FatI	CATG	2 cut(s)	261, 474
Fnu4HI	GCNGC	4 cut(s)	332, 335, 427, 512
FokI	GGATG	3 cut(s)	94, 127, 511
FriOI	GRGCYC	1 cut(s)	594
Fsp4HI	GCNGC	4 cut(s)	332, 335, 427, 512
FspBI	CTAG	1 cut(s)	267
GlaI	GCGC	1 cut(s)	467
GluI	GCNGC	4 cut(s)	332, 335, 427, 512
HapII	CCGG	1 cut(s)	527
HgaI	GACGC	1 cut(s)	439
HhaI	GCGC	1 cut(s)	468
Hin1II	CATG	2 cut(s)	265, 478
Hin6I	GCGC	1 cut(s)	466
HinP1I	GCGC	1 cut(s)	466
HindIII	AAGCTT	2 cut(s)	96, 246
HinfI	GANTC	2 cut(s)	202, 558
HpaII	CCGG	1 cut(s)	527
HphI	GGTGA	3 cut(s)	30, 138, 367
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	1 cut(s)	557
Hpy188III	TCNNGA	5 cut(s)	33, 184, 401, 461, 527
Hpy8I	GTNNAC	1 cut(s)	445
Hpy99I	CGWCG	2 cut(s)	389, 455
HpyAV	CCTTC	3 cut(s)	94, 346, 409
HpyCH4V	TGCA	1 cut(s)	46
HpyF10VI	GCNNNNNNNGC	2 cut(s)	267, 511
HpyF3I	CTNAG	3 cut(s)	275, 486, 554
Hsp92II	CATG	2 cut(s)	265, 478
HspAI	GCGC	1 cut(s)	466
Kpn2I	TCCGGA	1 cut(s)	526
Kzo9I	GATC	3 cut(s)	35, 186, 457
LmnI	GCTCC	2 cut(s)	394, 589
LpnPI	CCDG	7 cut(s)	210, 243, 298, 386, 540, 547, 551
MaeI	CTAG	1 cut(s)	267
MaeIII	GTNAC	1 cut(s)	641
MalI	GATC	3 cut(s)	37, 188, 459
MboI	GATC	3 cut(s)	35, 186, 457
MboII	GAAGA	9 cut(s)	9, 121, 150, 197, 370, 373, 376, 542, 581
MflI	RGATCY	1 cut(s)	186
MhlI	GDGCHC	2 cut(s)	8, 594
MmeI	TCCRAC	2 cut(s)	84, 216
MroI	TCCGGA	1 cut(s)	526
MroXI	GAANNNNTTC	1 cut(s)	548
MseI	TTAA	1 cut(s)	125
MslI	CAYNNNNRTG	1 cut(s)	473
MspA1I	CMGCKG	1 cut(s)	312
MspI	CCGG	1 cut(s)	527
Mva1269I	GAATGC	1 cut(s)	550
MvnI	CGCG	1 cut(s)	450
MwoI	GCNNNNNNNGC	2 cut(s)	267, 511
NdeII	GATC	3 cut(s)	35, 186, 457
NheI	GCTAGC	1 cut(s)	266
NlaIII	CATG	2 cut(s)	265, 478
NlaIV	GGNNCC	1 cut(s)	7
PaeR7I	CTCGAG	1 cut(s)	461
PcsI	WCGNNNNNNNCGW	2 cut(s)	447, 459
PctI	GAATGC	1 cut(s)	550
PdmI	GAANNNNTTC	1 cut(s)	548
PfeI	GAWTC	2 cut(s)	202, 558
PkrI	GCNGC	4 cut(s)	333, 336, 428, 513
Psp124BI	GAGCTC	1 cut(s)	594
PspN4I	GGNNCC	1 cut(s)	7
PsuI	RGATCY	1 cut(s)	186
RsaI	GTAC	2 cut(s)	446, 539
RsaNI	GTAC	2 cut(s)	445, 538
RseI	CAYNNNNRTG	1 cut(s)	473
SacI	GAGCTC	1 cut(s)	594
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	4 cut(s)	332, 335, 427, 512
Sau3AI	GATC	3 cut(s)	35, 186, 457
ScaI	AGTACT	1 cut(s)	539
SduI	GDGCHC	2 cut(s)	8, 594
Sfr274I	CTCGAG	1 cut(s)	461
SlaI	CTCGAG	1 cut(s)	461
SmiMI	CAYNNNNRTG	1 cut(s)	473
SmlI	CTYRAG	2 cut(s)	93, 461
SmoI	CTYRAG	2 cut(s)	93, 461
SsiI	CCGC	7 cut(s)	104, 310, 331, 334, 427, 448, 511
SspMI	CTAG	1 cut(s)	267
SstI	GAGCTC	1 cut(s)	594
TaqI	TCGA	3 cut(s)	34, 462, 542
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	4 cut(s)	334, 337, 429, 514
TfiI	GAWTC	2 cut(s)	202, 558
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TspDTI	ATGAA	4 cut(s)	164, 211, 365, 515
XapI	RAATTY	2 cut(s)	280, 288
XhoI	CTCGAG	1 cut(s)	461
XmnI	GAANNNNTTC	1 cut(s)	548
XspI	CTAG	1 cut(s)	267
ZrmI	AGTACT	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.