Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010618

Physical Location & Seq

Genomic Coordinates Reverse (-)

164577 .. 164882

Gene Structure 306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG001400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAGGATATTCGTCGCTTCGGAGCTTCTGCAATTGCCCAAGAAGGACAAGTGCTACCTCCTCTACACCATGTACCGCATCGACGATCTCGAGCGCACCATCAAGTTTTACACCAAGGCTCTTGGGATGAAGCTATTGCGACATAGGGATATTCCGGAAGAGAAGTACTCGAATGCTTTCCTCGGATTCAGGCTGGAAGAAACGAACTTTGTAATGGAGCTCACTTACAATTATGGAGTAATTCCTATGATATTGGGATTGGGTTTGGTTACAAAAGAGCTTGGAGGAAAGATAACAAGGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004462 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005829 GO:0005886 GO:0006081 GO:0006082 GO:0006089 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009438 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016151 GO:0016829 GO:0016846 GO:0019243 GO:0019752 GO:0019863 GO:0019865 GO:0031967 GO:0031975 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046185 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051596 GO:0061727 GO:0071704 GO:0071944 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

101

Amino Acids

11.92

Weight (kDa)

9.01

Isoelectric Point (pI)

23.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	21 - 63	2.2e-07	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010618)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110191 RchiOBHm_Chr4g0413001
rosa_laevigata	RLG00000009902 RLG00000022903
rosa_multiflora	Rmu_sc0020732.1_g000002
rosa_roxburghii	Rroxscaffold_4G00303600
rosa_rugosa	Rorug04G0159500 Rorug05G0176000 Rorug06G0078000
rosa_samantha	Rh2AG218600 Rh2AG399700 Rh2BG092100 Rh2BG408500 Rh2DG224500 Rh4AG177000 Rh4CG187900 Rh6BG398900 Rh7AG001300 Rh7CG001100 Rh7CG452500 Rh7DG001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	154
AciI	CCGC	1 cut(s)	76
AfaI	GTAC	2 cut(s)	74, 167
AluBI	AGCT	4 cut(s)	25, 133, 220, 280
AluI	AGCT	4 cut(s)	25, 133, 220, 280
Alw21I	GWGCWC	1 cut(s)	222
Ama87I	CYCGRG	1 cut(s)	89
Aor13HI	TCCGGA	1 cut(s)	154
Asp700I	GAANNNNTTC	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	222
BccI	CCATC	1 cut(s)	107
BmcAI	AGTACT	1 cut(s)	167
BmeT110I	CYCGRG	1 cut(s)	89
BmsI	GCATC	1 cut(s)	87
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BsaJI	CCNNGG	2 cut(s)	114, 181
BsaWI	WCCGGW	1 cut(s)	154
BseAI	TCCGGA	1 cut(s)	154
BseDI	CCNNGG	2 cut(s)	114, 181
BseGI	GGATG	1 cut(s)	132
BseRI	GAGGAG	1 cut(s)	50
BsiHKAI	GWGCWC	1 cut(s)	222
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	178
BsoBI	CYCGRG	1 cut(s)	89
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp13I	TCCGGA	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	85
BspACI	CCGC	1 cut(s)	76
BspEI	TCCGGA	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	114, 181
BssMI	GATC	1 cut(s)	85
BssT1I	CCWWGG	1 cut(s)	114
Bst6I	CTCTTC	1 cut(s)	153
BstF5I	GGATG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	96
BstKTI	GATC	1 cut(s)	88
BstMBI	GATC	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	132
CfoI	GCGC	1 cut(s)	96
Csp6I	GTAC	2 cut(s)	73, 166
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	6 cut(s)	25, 119, 133, 193, 220, 280
CviKI_1	RGCY	6 cut(s)	25, 119, 133, 193, 220, 280
CviQI	GTAC	2 cut(s)	73, 166
DpnI	GATC	1 cut(s)	87
DpnII	GATC	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Ecl136II	GAGCTC	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	222
Eco53kI	GAGCTC	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	89
EcoICRI	GAGCTC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	222
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	1 cut(s)	73
FaiI	YATR	4 cut(s)	71, 144, 234, 248
FatI	CATG	1 cut(s)	69
FokI	GGATG	1 cut(s)	139
FriOI	GRGCYC	1 cut(s)	222
GlaI	GCGC	1 cut(s)	95
HapII	CCGG	1 cut(s)	155
HhaI	GCGC	1 cut(s)	96
Hin1II	CATG	1 cut(s)	73
Hin6I	GCGC	1 cut(s)	94
HinP1I	GCGC	1 cut(s)	94
HinfI	GANTC	1 cut(s)	186
HpaII	CCGG	1 cut(s)	155
Hpy188I	TCNGA	2 cut(s)	22, 185
Hpy188III	TCNNGA	2 cut(s)	89, 155
Hpy99I	CGWCG	2 cut(s)	17, 86
HpyAV	CCTTC	1 cut(s)	37
HpyCH4V	TGCA	1 cut(s)	31
Hsp92II	CATG	1 cut(s)	73
HspAI	GCGC	1 cut(s)	94
Kpn2I	TCCGGA	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	85
LmnI	GCTCC	2 cut(s)	22, 217
LpnPI	CCDG	3 cut(s)	168, 175, 179
LweI	GCATC	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	1 cut(s)	87
MboI	GATC	1 cut(s)	85
MboII	GAAGA	2 cut(s)	170, 209
MfeI	CAATTG	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	3 cut(s)	32, 229, 240
MnlI	CCTC	4 cut(s)	68, 71, 191, 278
MroI	TCCGGA	1 cut(s)	154
MroXI	GAANNNNTTC	1 cut(s)	176
MspI	CCGG	1 cut(s)	155
MunI	CAATTG	1 cut(s)	32
Mva1269I	GAATGC	1 cut(s)	178
NdeII	GATC	1 cut(s)	85
NlaIII	CATG	1 cut(s)	73
PaeR7I	CTCGAG	1 cut(s)	89
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PctI	GAATGC	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	186
Psp124BI	GAGCTC	1 cut(s)	222
RsaI	GTAC	2 cut(s)	74, 167
RsaNI	GTAC	2 cut(s)	73, 166
SacI	GAGCTC	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	85
ScaI	AGTACT	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	5 cut(s)	27, 60, 135, 222, 282
SfaNI	GCATC	1 cut(s)	87
Sfr274I	CTCGAG	1 cut(s)	89
SlaI	CTCGAG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	3 cut(s)	32, 229, 240
SsiI	CCGC	1 cut(s)	76
SstI	GAGCTC	1 cut(s)	222
StyI	CCWWGG	1 cut(s)	114
TaqI	TCGA	3 cut(s)	81, 90, 170
TasI	AATT	3 cut(s)	32, 229, 240
TatI	WGTACW	1 cut(s)	165
TfiI	GAWTC	1 cut(s)	186
TspDTI	ATGAA	1 cut(s)	143
XhoI	CTCGAG	1 cut(s)	89
XmnI	GAANNNNTTC	1 cut(s)	176
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.