Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0010618

Physical Location & Seq

Genomic Coordinates Forward (+)

59560906 .. 59561175

Gene Structure 270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG399700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGAGGATATTCGTCACTCCGGAGCTTCTGGAATGGCCCAAGAAGGACAAGCGCCGCGTCGGCGATCTCGAGCGCACCACCAAGTTTTACACTGAGGCTCTTGGGATGAAGCTGTTGCGGCAGAGGGATATTCCAGAAGCGAAGTACTTAGATGCTTTCCTCGGATTCGGGCTGGAAGAAACGAACTTTGTAATGGAGCTCACTTACAATTATGGAGTTAATTCCTATGATATTGGGATTGGGTTTGGTTACAAAAGAGCTTGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004462 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005777 GO:0005829 GO:0005886 GO:0006081 GO:0006082 GO:0006089 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009438 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0016020 GO:0016151 GO:0016829 GO:0016846 GO:0019243 GO:0019752 GO:0019863 GO:0019865 GO:0031967 GO:0031975 GO:0032787 GO:0042180 GO:0042182 GO:0042221 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044248 GO:0044281 GO:0044282 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0046185 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0051596 GO:0061727 GO:0071704 GO:0071944 GO:1901575 GO:1901615

KEGG Pathways

Metabolic & Signaling

ko00620 map00620

Pfam Domains

Protein Families

Glyoxalase

Protein Analysis

89

Amino Acids

10.58

Weight (kDa)

8.92

Isoelectric Point (pI)

30.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyoxalase	PF00903	19 - 80	8.4e-08	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0010618)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110191 RchiOBHm_Chr4g0413001
rosa_laevigata	RLG00000009902 RLG00000022903
rosa_multiflora	Rmu_sc0020732.1_g000002
rosa_roxburghii	Rroxscaffold_4G00303600
rosa_rugosa	Rorug04G0159500 Rorug05G0176000 Rorug06G0078000
rosa_samantha	Rh2AG218600 Rh2AG399700 Rh2BG092100 Rh2BG408500 Rh2DG224500 Rh4AG177000 Rh4CG187900 Rh6BG398900 Rh7AG001300 Rh7CG001100 Rh7CG452500 Rh7DG001400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	57
AccIII	TCCGGA	1 cut(s)	19
AciI	CCGC	2 cut(s)	55, 118
AfaI	GTAC	1 cut(s)	146
AluBI	AGCT	4 cut(s)	25, 112, 199, 260
AluI	AGCT	4 cut(s)	25, 112, 199, 260
Alw21I	GWGCWC	1 cut(s)	201
Ama87I	CYCGRG	1 cut(s)	68
Aor13HI	TCCGGA	1 cut(s)	19
AoxI	GGCC	1 cut(s)	35
AspLEI	GCGC	2 cut(s)	54, 75
AspS9I	GGNCC	1 cut(s)	36
AvaI	CYCGRG	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	55
BglI	GCCNNNNNGGC	1 cut(s)	60
BisI	GCNGC	2 cut(s)	55, 119
BlsI	GCNGC	2 cut(s)	56, 120
BmcAI	AGTACT	1 cut(s)	146
BmeT110I	CYCGRG	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	36
BmsI	GCATC	1 cut(s)	142
BsaJI	CCNNGG	1 cut(s)	160
BsaWI	WCCGGW	1 cut(s)	19
BseAI	TCCGGA	1 cut(s)	19
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	84
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	201
BsiHKCI	CYCGRG	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	20
BsnI	GGCC	1 cut(s)	37
BsoBI	CYCGRG	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp13I	TCCGGA	1 cut(s)	19
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	2 cut(s)	55, 118
BspANI	GGCC	1 cut(s)	37
BspCNI	CTCAG	1 cut(s)	85
BspEI	TCCGGA	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	1 cut(s)	64
BstDEI	CTNAG	2 cut(s)	93, 148
BstF5I	GGATG	1 cut(s)	111
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	54, 75
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 118
BstUI	CGCG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	90
CfoI	GCGC	2 cut(s)	54, 75
Cfr13I	GGNCC	1 cut(s)	36
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	145
CviJI	RGCY	7 cut(s)	25, 37, 98, 112, 172, 199, 260
CviKI_1	RGCY	7 cut(s)	25, 37, 98, 112, 172, 199, 260
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	2 cut(s)	93, 148
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Ecl136II	GAGCTC	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	199
Eco88I	CYCGRG	1 cut(s)	68
EcoICRI	GAGCTC	1 cut(s)	199
EcoT38I	GRGCYC	1 cut(s)	201
FaiI	YATR	2 cut(s)	213, 228
Fnu4HI	GCNGC	2 cut(s)	55, 119
FokI	GGATG	1 cut(s)	118
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	2 cut(s)	55, 119
GlaI	GCGC	2 cut(s)	53, 74
GluI	GCNGC	2 cut(s)	55, 119
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	37
HapII	CCGG	1 cut(s)	20
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	2 cut(s)	54, 75
Hin6I	GCGC	2 cut(s)	52, 73
HinP1I	GCGC	2 cut(s)	52, 73
HinfI	GANTC	1 cut(s)	165
HpaII	CCGG	1 cut(s)	20
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	4 cut(s)	20, 29, 68, 134
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 118
HpyF3I	CTNAG	2 cut(s)	93, 148
HspAI	GCGC	2 cut(s)	52, 73
Kpn2I	TCCGGA	1 cut(s)	19
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	2 cut(s)	22, 196
LpnPI	CCDG	4 cut(s)	14, 33, 147, 158
LweI	GCATC	1 cut(s)	142
MaeIII	GTNAC	2 cut(s)	13, 248
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	1 cut(s)	188
MhlI	GDGCHC	1 cut(s)	201
MluCI	AATT	2 cut(s)	208, 220
MnlI	CCTC	4 cut(s)	88, 117, 170, 258
MroI	TCCGGA	1 cut(s)	19
MseI	TTAA	1 cut(s)	219
MspI	CCGG	1 cut(s)	20
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	60, 118
NdeII	GATC	1 cut(s)	64
NmuCI	GTSAC	1 cut(s)	13
PaeR7I	CTCGAG	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	56, 120
Psp124BI	GAGCTC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	36
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	2 cut(s)	55, 119
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	36
ScaI	AGTACT	1 cut(s)	146
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	5 cut(s)	27, 114, 201, 262, 269
SfaNI	GCATC	1 cut(s)	142
Sfr274I	CTCGAG	1 cut(s)	68
SlaI	CTCGAG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	2 cut(s)	208, 220
SsiI	CCGC	2 cut(s)	55, 118
SstI	GAGCTC	1 cut(s)	201
TaqI	TCGA	1 cut(s)	69
TasI	AATT	2 cut(s)	208, 220
TatI	WGTACW	1 cut(s)	144
TauI	GCSGC	2 cut(s)	57, 121
TfiI	GAWTC	1 cut(s)	165
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	13
TspDTI	ATGAA	1 cut(s)	122
TspRI	CASTG	1 cut(s)	97
XhoI	CTCGAG	1 cut(s)	68
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.