Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013757

Physical Location & Seq

Genomic Coordinates Reverse (-)

55874013 .. 55874472

Gene Structure 460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50879

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAGCACATCGTCAAAAATATCCCAGTACCACAAAGGGACTTGGCCTCACCTCATTATATCAATTATTCATTCTTTTGACGTCAACAAATCTGGGTATGAGATTGATCGCTTGAGAGGCGGTGTGGTGGGTGGAACCTGGGTCAGGGGTGTTGTGAAACTGAACCACTTGATTGAGGTTTGCCCGGGGAAGGTTGAAAAGGACGAGAACGACAACTTCAAATGCACGCCATTATATTCTAGACTGGTTTCCTTGTTTTGCCAAGGAAAACAGGTTCTTGGTGATGTGGAGTCACTTCCTGATGTATTTGTACGACTTGAAGTGACCTTCTTCATCTTTAAAAAGGTGTTGGGGATGGGAAATCAAGCAGGGATCAGAAGGGTCAGCAGGAATGAGATTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

134

Amino Acids

15.09

Weight (kDa)

9.27

Isoelectric Point (pI)

30.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013757)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138081 RchiOBHm_Chr2g0138091 RchiOBHm_Chr6g0259921
rosa_laevigata	RLG00000019718 RLG00000019719 RLG00000019723 RLG00000019724
rosa_multiflora	Rmu_sc0004576.1_g000021 Rmu_sc0009049.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106500 Rroxscaffold_2G00106530
rosa_rugosa	Rorug02G0349500 Rorug05G0591400
rosa_samantha	Rh2AG396200 Rh2CG382700 Rh6BG103700 Rh6CG097000 Rh6DG090700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	84
AciI	CCGC	1 cut(s)	120
AclWI	GGATC	1 cut(s)	380
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	2 cut(s)	29, 312
AfiI	CCNNNNNNNGG	2 cut(s)	144, 190
AgsI	TTSAA	3 cut(s)	197, 220, 320
AjnI	CCWGG	1 cut(s)	137
AloI	GAACNNNNNNTCC	2 cut(s)	258, 290
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	380
Ama87I	CYCGRG	1 cut(s)	184
AoxI	GGCC	1 cut(s)	44
AsuC2I	CCSGG	2 cut(s)	185, 186
AsuHPI	GGTGA	2 cut(s)	41, 293
AvaI	CYCGRG	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	8
BccI	CCATC	1 cut(s)	349
BciT130I	CCWGG	1 cut(s)	139
BcnI	CCSGG	2 cut(s)	185, 186
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	1 cut(s)	401
Bme1390I	CCNGG	3 cut(s)	139, 185, 186
BmeT110I	CYCGRG	1 cut(s)	184
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	3 cut(s)	139, 185, 186
BmrI	ACTGGG	1 cut(s)	19
BmuI	ACTGGG	1 cut(s)	19
BpuEI	CTTGAG	1 cut(s)	133
BpuMI	CCSGG	2 cut(s)	185, 186
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	4 cut(s)	138, 184, 185, 262
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 190
Bse1I	ACTGG	2 cut(s)	25, 249
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	4 cut(s)	138, 184, 185, 262
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	2 cut(s)	144, 190
BseNI	ACTGG	2 cut(s)	25, 249
BshFI	GGCC	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	52
BslI	CCNNNNNNNGG	2 cut(s)	144, 190
BsmFI	GGGAC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	46
BsoBI	CYCGRG	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	106, 372
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	136
BspPI	GGATC	1 cut(s)	380
BsrI	ACTGG	2 cut(s)	25, 249
BssECI	CCNNGG	4 cut(s)	138, 184, 185, 262
BssMI	GATC	2 cut(s)	106, 372
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	262
Bst2UI	CCWGG	1 cut(s)	139
BstACI	GRCGYC	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	227
BstENI	CCTNNNNNAGG	1 cut(s)	142
BstF5I	GGATG	1 cut(s)	360
BstKTI	GATC	2 cut(s)	109, 375
BstMBI	GATC	2 cut(s)	106, 372
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	3 cut(s)	137, 183, 184
BstSFI	CTRYAG	1 cut(s)	401
BsuRI	GGCC	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	360
Cac8I	GCNNGC	1 cut(s)	227
Cfr9I	CCCGGG	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	28, 311
CviJI	RGCY	1 cut(s)	46
CviKI_1	RGCY	1 cut(s)	46
CviQI	GTAC	2 cut(s)	28, 311
DpnI	GATC	2 cut(s)	108, 374
DpnII	GATC	2 cut(s)	106, 372
DraI	TTTAAA	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	262
Eco88I	CYCGRG	1 cut(s)	184
EcoNI	CCTNNNNNAGG	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	262
ErhI	CCWWGG	1 cut(s)	262
FaiI	YATR	4 cut(s)	59, 99, 235, 403
FaqI	GGGAC	1 cut(s)	52
FokI	GGATG	1 cut(s)	367
FspBI	CTAG	1 cut(s)	240
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	81
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HinfI	GANTC	2 cut(s)	290, 397
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	2 cut(s)	41, 293
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	2 cut(s)	240, 299
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	3 cut(s)	184, 337, 372
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	106, 372
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	2 cut(s)	291, 322
MalI	GATC	2 cut(s)	108, 374
MboI	GATC	2 cut(s)	106, 372
MboII	GAAGA	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	4 cut(s)	57, 62, 110, 169
MseI	TTAA	1 cut(s)	339
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	3 cut(s)	139, 185, 186
MvaI	CCWGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	1 cut(s)	117
NciI	CCSGG	2 cut(s)	185, 186
NdeII	GATC	2 cut(s)	106, 372
NlaIV	GGNNCC	1 cut(s)	136
NmuCI	GTSAC	2 cut(s)	291, 322
PfeI	GAWTC	1 cut(s)	397
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	136
RsaI	GTAC	2 cut(s)	29, 312
RsaNI	GTAC	2 cut(s)	28, 311
SaqAI	TTAA	1 cut(s)	339
Sau3AI	GATC	2 cut(s)	106, 372
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	3 cut(s)	139, 185, 186
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	8 cut(s)	54, 84, 140, 180, 195, 276, 329, 348
SfcI	CTRYAG	1 cut(s)	401
SmaI	CCCGGG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	1 cut(s)	63
SsiI	CCGC	1 cut(s)	120
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	3 cut(s)	137, 183, 184
StyI	CCWWGG	1 cut(s)	262
TaiI	ACGT	1 cut(s)	84
TasI	AATT	1 cut(s)	63
TfiI	GAWTC	1 cut(s)	397
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TseFI	GTSAC	2 cut(s)	291, 322
Tsp45I	GTSAC	2 cut(s)	291, 322
TspDTI	ATGAA	2 cut(s)	59, 322
TspMI	CCCGGG	1 cut(s)	184
XagI	CCTNNNNNAGG	1 cut(s)	142
XbaI	TCTAGA	1 cut(s)	239
XmaI	CCCGGG	1 cut(s)	184
XspI	CTAG	1 cut(s)	240
ZraI	GACGTC	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.