Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013757

Physical Location & Seq

Genomic Coordinates Reverse (-)

55951773 .. 55952269

Gene Structure 497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019718

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGATGTAGTTGATGAGCACGTCGTCAAAAATATCCCAGTACCACAAAGGGACTTGGCCGCACCTCCTTATATTACAATTATTCATTCTTTTGACGTCAACAAATCTGGGTATGAGATTGATCGCTTGAGAGGCGGTGTGGTGGGTGGAACCAGGGTCAGGGGTGTTGTGAAACTGAACCACTTGATTGAGGTTTGCCCGGTGAAGGTTGAAAAGGACGAGAACGACAACTTCAAATCCACGCCATTATATTCTAGACTGGTTCTTGGTGATGCGGAGTCACTTCCTGATGTATTTGTACAACTTGAAGTGAACATCTTCTTCTTTAAAAAGGTGTTGGGGATGGGAAATCAAGCAGGGATCAGAAGAGTCAGCAGGAATGAGATTCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

131

Amino Acids

14.57

Weight (kDa)

6.83

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013757)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138081 RchiOBHm_Chr2g0138091 RchiOBHm_Chr6g0259921
rosa_laevigata	RLG00000019718 RLG00000019719 RLG00000019723 RLG00000019724
rosa_multiflora	Rmu_sc0004576.1_g000021 Rmu_sc0009049.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106500 Rroxscaffold_2G00106530
rosa_rugosa	Rorug02G0349500 Rorug05G0591400
rosa_samantha	Rh2AG396200 Rh2CG382700 Rh6BG103700 Rh6CG097000 Rh6DG090700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	99
AciI	CCGC	3 cut(s)	60, 135, 275
AclWI	GGATC	1 cut(s)	368
AcoI	YGGCCR	1 cut(s)	57
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	2 cut(s)	42, 300
AfiI	CCNNNNNNNGG	2 cut(s)	159, 205
AgsI	TTSAA	3 cut(s)	212, 235, 308
AjiI	CACGTC	1 cut(s)	22
AjnI	CCWGG	1 cut(s)	152
Alw21I	GWGCWC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	368
AoxI	GGCC	1 cut(s)	57
Asp700I	GAANNNNTTC	1 cut(s)	317
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	2 cut(s)	214, 281
Bbv12I	GWGCWC	1 cut(s)	21
BccI	CCATC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	154
BcnI	CCSGG	1 cut(s)	200
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	389
BisI	GCNGC	1 cut(s)	60
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	2 cut(s)	154, 200
BmgBI	CACGTC	1 cut(s)	22
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	2 cut(s)	154, 200
BmrI	ACTGGG	1 cut(s)	32
BmsI	GCATC	1 cut(s)	262
BmuI	ACTGGG	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	148
BpuMI	CCSGG	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 205
Bse1I	ACTGG	2 cut(s)	38, 264
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	2 cut(s)	10, 348
BseLI	CCNNNNNNNGG	2 cut(s)	159, 205
BseNI	ACTGG	2 cut(s)	38, 264
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	159, 205
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp1407I	TGTACA	1 cut(s)	298
Bsp143I	GATC	2 cut(s)	121, 360
BspACI	CCGC	3 cut(s)	60, 135, 275
BspANI	GGCC	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	151
BspPI	GGATC	1 cut(s)	368
BsrGI	TGTACA	1 cut(s)	298
BsrI	ACTGG	2 cut(s)	38, 264
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	2 cut(s)	121, 360
BssNI	GRCGYC	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	361
BstACI	GRCGYC	1 cut(s)	96
BstAUI	TGTACA	1 cut(s)	298
BstF5I	GGATG	2 cut(s)	10, 348
BstKTI	GATC	2 cut(s)	124, 363
BstMBI	GATC	2 cut(s)	121, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	2 cut(s)	152, 198
BstSFI	CTRYAG	1 cut(s)	389
BsuRI	GGCC	1 cut(s)	59
BtrI	CACGTC	1 cut(s)	22
BtsCI	GGATG	2 cut(s)	10, 348
Csp6I	GTAC	2 cut(s)	41, 299
CviJI	RGCY	1 cut(s)	59
CviKI_1	RGCY	1 cut(s)	59
CviQI	GTAC	2 cut(s)	41, 299
DpnI	GATC	2 cut(s)	123, 362
DpnII	GATC	2 cut(s)	121, 360
DraI	TTTAAA	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	361
EarI	CTCTTC	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	152
FaiI	YATR	4 cut(s)	72, 114, 250, 391
FaqI	GGGAC	1 cut(s)	65
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	2 cut(s)	17, 355
Fsp4HI	GCNGC	1 cut(s)	60
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	3 cut(s)	278, 369, 385
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	2 cut(s)	214, 281
Hpy166II	GTNNAC	2 cut(s)	100, 313
Hpy188I	TCNGA	1 cut(s)	365
Hpy188III	TCNNGA	2 cut(s)	255, 287
Hpy8I	GTNNAC	2 cut(s)	100, 313
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	1 cut(s)	199
HpyCH4IV	ACGT	2 cut(s)	21, 96
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpySE526I	ACGT	2 cut(s)	21, 96
Hsp92I	GRCGYC	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	121, 360
LweI	GCATC	1 cut(s)	262
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	2 cut(s)	21, 96
MaeIII	GTNAC	1 cut(s)	279
MalI	GATC	2 cut(s)	123, 362
MboI	GATC	2 cut(s)	121, 360
MboII	GAAGA	3 cut(s)	310, 313, 378
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	1 cut(s)	78
MlyI	GAGTC	2 cut(s)	287, 378
MnlI	CCTC	3 cut(s)	75, 125, 184
MroXI	GAANNNNTTC	1 cut(s)	317
MseI	TTAA	1 cut(s)	327
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	154, 200
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	1 cut(s)	132
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	2 cut(s)	121, 360
NlaIV	GGNNCC	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	279
PdmI	GAANNNNTTC	1 cut(s)	317
PfeI	GAWTC	1 cut(s)	385
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	2 cut(s)	286, 377
PpsI	GAGTC	2 cut(s)	286, 377
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	1 cut(s)	151
RsaI	GTAC	2 cut(s)	42, 300
RsaNI	GTAC	2 cut(s)	41, 299
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	2 cut(s)	121, 360
SchI	GAGTC	2 cut(s)	287, 378
ScrFI	CCNGG	2 cut(s)	154, 200
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	6 cut(s)	24, 67, 99, 195, 210, 336
SfaNI	GCATC	1 cut(s)	262
SfcI	CTRYAG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	3 cut(s)	60, 135, 275
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	152, 198
TaiI	ACGT	2 cut(s)	24, 99
TasI	AATT	1 cut(s)	78
TatI	WGTACW	1 cut(s)	298
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	279
Tsp45I	GTSAC	1 cut(s)	279
TspDTI	ATGAA	1 cut(s)	74
XbaI	TCTAGA	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	1 cut(s)	255
ZraI	GACGTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.