Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013757

Physical Location & Seq

Genomic Coordinates Reverse (-)

55987145 .. 55987614

Gene Structure 470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019724

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGTCGAAGAAGAAGAACAATAGTAAGGGTCGTCTAACAGAGCAAGACCTGACAACACTGGATGTAACAGAGTTGCATTCACTCTCCCCTGAATTAATATCTTGTATGGCATCTAGCAATATTGGCTCTATAGGTCATTTGGCTCATGATTGCCTGGCCCACGATGCGCTGATGGCAGCTATGCGCAATGGTGTCTCCATTATGGATGAAGCATTGCTTCTCGTAGCAGCTAATGAAGAACTTCCCCCAGCACAAACCAAAGAGCATTTGGCTACTCTTGCAATTATGCGTCTTAAAGACATTATTTTCCACCAAATCGACGAGGATCGGGCCAACTGCTCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

116

Amino Acids

12.54

Weight (kDa)

5.38

Isoelectric Point (pI)

43.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013757)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138081 RchiOBHm_Chr2g0138091 RchiOBHm_Chr6g0259921
rosa_laevigata	RLG00000019718 RLG00000019719 RLG00000019723 RLG00000019724
rosa_multiflora	Rmu_sc0004576.1_g000021 Rmu_sc0009049.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106500 Rroxscaffold_2G00106530
rosa_rugosa	Rorug02G0349500 Rorug05G0591400
rosa_samantha	Rh2AG396200 Rh2CG382700 Rh6BG103700 Rh6CG097000 Rh6DG090700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	185
AclWI	GGATC	1 cut(s)	333
AjnI	CCWGG	1 cut(s)	153
AluBI	AGCT	2 cut(s)	179, 230
AluI	AGCT	2 cut(s)	179, 230
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	333
AoxI	GGCC	2 cut(s)	156, 330
ApeKI	GCWGC	2 cut(s)	176, 227
AseI	ATTAAT	1 cut(s)	95
Asp700I	GAANNNNTTC	1 cut(s)	240
AspLEI	GCGC	2 cut(s)	169, 186
AspS9I	GGNCC	2 cut(s)	157, 330
BbvI	GCAGC	2 cut(s)	188, 239
BccI	CCATC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	155
BcoDI	GTCTC	1 cut(s)	199
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	129
BisI	GCNGC	2 cut(s)	177, 228
BlsI	GCNGC	2 cut(s)	178, 229
Bme1390I	CCNGG	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	157, 330
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	2 cut(s)	119, 154
Bse1I	ACTGG	1 cut(s)	63
Bse3DI	GCAATG	2 cut(s)	193, 212
BseBI	CCWGG	1 cut(s)	155
BseGI	GGATG	2 cut(s)	67, 211
BseMI	GCAATG	2 cut(s)	193, 212
BseNI	ACTGG	1 cut(s)	63
BseXI	GCAGC	2 cut(s)	188, 239
BseYI	CCCAGC	1 cut(s)	247
BshFI	GGCC	2 cut(s)	158, 332
BsmAI	GTCTC	1 cut(s)	199
BsmI	GAATGC	1 cut(s)	76
BsnI	GGCC	2 cut(s)	158, 332
Bsp143I	GATC	1 cut(s)	325
BspANI	GGCC	2 cut(s)	158, 332
BspHI	TCATGA	1 cut(s)	145
BspPI	GGATC	1 cut(s)	333
BsrDI	GCAATG	2 cut(s)	193, 212
BsrI	ACTGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	155
BstF5I	GGATG	2 cut(s)	67, 211
BstHHI	GCGC	2 cut(s)	169, 186
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	4 cut(s)	123, 164, 173, 278
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	188, 239
BsuRI	GGCC	2 cut(s)	158, 332
BtsCI	GGATG	2 cut(s)	67, 211
BtsIMutI	CAGTG	1 cut(s)	56
CciI	TCATGA	1 cut(s)	145
CfoI	GCGC	2 cut(s)	169, 186
Cfr13I	GGNCC	2 cut(s)	157, 330
CseI	GACGC	1 cut(s)	278
CviAII	CATG	1 cut(s)	146
CviJI	RGCY	7 cut(s)	126, 143, 158, 179, 230, 272, 332
CviKI_1	RGCY	7 cut(s)	126, 143, 158, 179, 230, 272, 332
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	153
FaeI	CATG	1 cut(s)	149
FaiI	YATR	6 cut(s)	107, 131, 147, 182, 203, 287
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FatI	CATG	1 cut(s)	145
Fnu4HI	GCNGC	2 cut(s)	177, 228
FokI	GGATG	2 cut(s)	74, 218
Fsp4HI	GCNGC	2 cut(s)	177, 228
FspBI	CTAG	1 cut(s)	114
FspI	TGCGCA	1 cut(s)	185
GlaI	GCGC	2 cut(s)	168, 185
GluI	GCNGC	2 cut(s)	177, 228
GsaI	CCCAGC	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	158, 332
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	2 cut(s)	169, 186
Hin1II	CATG	1 cut(s)	149
Hin6I	GCGC	2 cut(s)	167, 184
HinP1I	GCGC	2 cut(s)	167, 184
Hpy188III	TCNNGA	1 cut(s)	146
Hpy99I	CGWCG	1 cut(s)	323
HpyCH4V	TGCA	2 cut(s)	76, 281
HpyF10VI	GCNNNNNNNGC	4 cut(s)	123, 164, 173, 278
Hsp92II	CATG	1 cut(s)	149
HspAI	GCGC	2 cut(s)	167, 184
Kzo9I	GATC	1 cut(s)	325
LpnPI	CCDG	6 cut(s)	44, 62, 102, 140, 167, 261
Lsp1109I	GCAGC	2 cut(s)	188, 239
LweI	GCATC	2 cut(s)	119, 154
MaeI	CTAG	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	4 cut(s)	19, 22, 25, 248
MluCI	AATT	2 cut(s)	92, 282
MnlI	CCTC	1 cut(s)	316
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	2 cut(s)	95, 294
MspR9I	CCNGG	1 cut(s)	155
Mva1269I	GAATGC	1 cut(s)	76
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	4 cut(s)	123, 164, 173, 278
NdeII	GATC	1 cut(s)	325
NlaIII	CATG	1 cut(s)	149
NsbI	TGCGCA	1 cut(s)	185
PagI	TCATGA	1 cut(s)	145
PctI	GAATGC	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	240
PkrI	GCNGC	2 cut(s)	178, 229
PshBI	ATTAAT	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	153
PspPI	GGNCC	2 cut(s)	157, 330
SaqAI	TTAA	2 cut(s)	95, 294
SatI	GCNGC	2 cut(s)	177, 228
Sau3AI	GATC	1 cut(s)	325
Sau96I	GGNCC	2 cut(s)	157, 330
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	4 cut(s)	51, 136, 181, 232
SfaNI	GCATC	2 cut(s)	119, 154
SfcI	CTRYAG	1 cut(s)	129
Sse9I	AATT	2 cut(s)	92, 282
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	1 cut(s)	114
StyD4I	CCNGG	1 cut(s)	153
TaqI	TCGA	2 cut(s)	5, 318
TasI	AATT	2 cut(s)	92, 282
Tru1I	TTAA	2 cut(s)	95, 294
Tru9I	TTAA	2 cut(s)	95, 294
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	2 cut(s)	176, 227
TspDTI	ATGAA	2 cut(s)	222, 249
TspRI	CASTG	1 cut(s)	63
VspI	ATTAAT	1 cut(s)	95
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XmnI	GAANNNNTTC	1 cut(s)	240
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.