Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013757

Physical Location & Seq

Genomic Coordinates Forward (+)

30105729 .. 30106104

Gene Structure 376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00106500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGATGTAGTTGATGAGCACACCGTCAAAAATATCCCAGTACCACAAAGGGACTTGGCCTCACCTCCTTATATTACAATTATTCATTCTTTTGACGTCAACAAATCTGGGTATGAGATTGATCACTTGAGAGGCGGTGTGGTGGGTGGAACCAGGGTCACGGGTGTTGTGAAACTGAACCACTTGATTGAGGTTTGCCAGGGGAAGGTTGAAAAGGACGAGAACGACAACTTCAGATGCACGCCATTATATTCTAGACTGGAAAGTGAGCTGCAGTTTGCTATCCCTGGAGGTCTCATTGGAGTCAGTACAACGATGAATCCCAGGAATGAGATTGGTCAGACAGGTTCTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

118

Amino Acids

13.02

Weight (kDa)

5.47

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013757)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138081 RchiOBHm_Chr2g0138091 RchiOBHm_Chr6g0259921
rosa_laevigata	RLG00000019718 RLG00000019719 RLG00000019723 RLG00000019724
rosa_multiflora	Rmu_sc0004576.1_g000021 Rmu_sc0009049.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106500 Rroxscaffold_2G00106530
rosa_rugosa	Rorug02G0349500 Rorug05G0591400
rosa_samantha	Rh2AG396200 Rh2CG382700 Rh6BG103700 Rh6CG097000 Rh6DG090700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	99
AciI	CCGC	1 cut(s)	135
AcuI	CTGAAG	1 cut(s)	217
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	2 cut(s)	42, 310
AfiI	CCNNNNNNNGG	1 cut(s)	205
AgsI	TTSAA	1 cut(s)	212
AjnI	CCWGG	4 cut(s)	152, 198, 286, 323
AluBI	AGCT	1 cut(s)	271
AluI	AGCT	1 cut(s)	271
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	299
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	258
BciT130I	CCWGG	4 cut(s)	154, 200, 288, 325
BclI	TGATCA	1 cut(s)	121
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	272
BisI	GCNGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	273
Bme1390I	CCNGG	4 cut(s)	154, 200, 288, 325
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	4 cut(s)	154, 200, 288, 325
BmrI	ACTGGG	1 cut(s)	32
BmsI	GCATC	1 cut(s)	227
BmuI	ACTGGG	1 cut(s)	32
BpmI	CTGGAG	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	148
BsaHI	GRCGYC	1 cut(s)	96
BsaI	GGTCTC	1 cut(s)	299
BsaJI	CCNNGG	4 cut(s)	153, 199, 286, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse1I	ACTGG	2 cut(s)	38, 264
BseBI	CCWGG	4 cut(s)	154, 200, 288, 325
BseDI	CCNNGG	4 cut(s)	153, 199, 286, 323
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseNI	ACTGG	2 cut(s)	38, 264
BseXI	GCAGC	1 cut(s)	258
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	21
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	59
Bso31I	GGTCTC	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	151
BspMAI	CTGCAG	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	299
BsrI	ACTGG	2 cut(s)	38, 264
BssECI	CCNNGG	4 cut(s)	153, 199, 286, 323
BssMI	GATC	1 cut(s)	121
BssNI	GRCGYC	1 cut(s)	96
Bst2UI	CCWGG	4 cut(s)	154, 200, 288, 325
Bst4CI	ACNGT	1 cut(s)	25
BstACI	GRCGYC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	1 cut(s)	121
BstNI	CCWGG	4 cut(s)	154, 200, 288, 325
BstSCI	CCNGG	4 cut(s)	152, 198, 286, 323
BstSFI	CTRYAG	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	41, 309
CviJI	RGCY	2 cut(s)	59, 271
CviKI_1	RGCY	2 cut(s)	59, 271
CviQI	GTAC	2 cut(s)	41, 309
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	299
Eco57I	CTGAAG	1 cut(s)	217
EcoRII	CCWGG	4 cut(s)	152, 198, 286, 323
FaiI	YATR	3 cut(s)	72, 114, 250
FaqI	GGGAC	1 cut(s)	65
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	1 cut(s)	272
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	272
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	1 cut(s)	272
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	2 cut(s)	303, 319
HphI	GGTGA	1 cut(s)	54
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	2 cut(s)	236, 342
Hpy188III	TCNNGA	1 cut(s)	255
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	240, 274
HpySE526I	ACGT	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	121
Lsp1109I	GCAGC	1 cut(s)	258
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	312
MnlI	CCTC	5 cut(s)	70, 75, 125, 184, 284
MspR9I	CCNGG	4 cut(s)	154, 200, 288, 325
MvaI	CCWGG	4 cut(s)	154, 200, 288, 325
NdeII	GATC	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	151
NmuCI	GTSAC	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	273
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
Psp6I	CCWGG	4 cut(s)	152, 198, 286, 323
PspGI	CCWGG	4 cut(s)	152, 198, 286, 323
PspN4I	GGNNCC	1 cut(s)	151
PstI	CTGCAG	1 cut(s)	276
RsaI	GTAC	2 cut(s)	42, 310
RsaNI	GTAC	2 cut(s)	41, 309
SatI	GCNGC	1 cut(s)	272
Sau3AI	GATC	1 cut(s)	121
SchI	GAGTC	1 cut(s)	312
ScrFI	CCNGG	4 cut(s)	154, 200, 288, 325
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	7 cut(s)	67, 99, 195, 210, 273, 295, 349
SfaNI	GCATC	1 cut(s)	227
SfcI	CTRYAG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	4 cut(s)	152, 198, 286, 323
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	1 cut(s)	99
TasI	AATT	1 cut(s)	78
TatI	WGTACW	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	74, 332
XbaI	TCTAGA	1 cut(s)	254
XspI	CTAG	1 cut(s)	255
ZraI	GACGTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.