Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0013757

Physical Location & Seq

Genomic Coordinates Reverse (-)

10629625 .. 10630731

Gene Structure 1107 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG090700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGTCGAAGATGAAGAAGAAGAATAATAAGGGTTTGATGGCTCAGGATCTGAGCAAACTGGATCTAACTCAGTTAGATCCACTCTCGCTGGAAGTTATATCTTGTCAGGCCACGATCAACATTGGCACAATAGGTCATGTGGCTCATGGATATGCTAATGCCAAAATTTACAAGTGTGGTAGCTGCCCCCGGCCTGACTGCTACAAGTCTTATGGTAGTGGAAAGGAAGACAATCCTATCTGTGACCGGTGTGGAAATCAGATGAGGCTGGAGAGAGATGTGTCCTTTGTAGATTGCCCTGGTCACGAAGCACTAATGGCTACTATGCTTAATGGTGTGTCCATTATGGATGGAGCGTTACCTGTTGTAGCTGCTGACGAACAGTTTCCCCAAGAACAAACCAAGGAGCATCTGGAAGCTGTTGAAATCTTGTCTCTTAAACACAACATTGTGCTTCAACACAAAGTTGACCTTGTCCGAGAGAAGGCAATAGAGCAGCGAATTGAGATGAAGGAATGGTTTCGTGGCACGGTAGCTGAAGATGCAACAATTGTGCCTATTGTTGCTCAACTGAAGTATAATATCGATGTAGTGAACGAGTACATTGTCAAGAAAAAACCCATTCCGGAAAGGGACTTTGCTTCGCCTCCTTATATGAGGATCATACGTTCGTTTGATGTCAACAAACCTGGGTTTGGGATTGATGACATAGAAGGTGCTGTGGCTGGTGGAACCCTTCTTAGCGGTGTTTTGAAACTGAACCAATTGGTCGAGGTTCGTCCCGGTCTTGTTGTCAAAGACGAGAGAGGAAATTTCTTGAGGAGGTCTGGGGTTGGCACAACCTTGGATCCTGCTTTGACTCGAGGCGATAAATTGGTGGGTCAAGTTGTTGGTGATGTTGGCTCACTCCCTGATGTGTATGCACAATTTGAGGTGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

313

Amino Acids

34.49

Weight (kDa)

6.02

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	92 - 204	1.4e-14	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013757)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138081 RchiOBHm_Chr2g0138091 RchiOBHm_Chr6g0259921
rosa_laevigata	RLG00000019718 RLG00000019719 RLG00000019723 RLG00000019724
rosa_multiflora	Rmu_sc0004576.1_g000021 Rmu_sc0009049.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106500 Rroxscaffold_2G00106530
rosa_rugosa	Rorug02G0349500 Rorug05G0591400
rosa_samantha	Rh2AG396200 Rh2CG382700 Rh6BG103700 Rh6CG097000 Rh6DG090700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	625
AciI	CCGC	1 cut(s)	744
AclWI	GGATC	6 cut(s)	54, 69, 71, 668, 842, 855
AcsI	RAATTY	2 cut(s)	165, 811
AcuI	CTGAAG	2 cut(s)	558, 593
AfaI	GTAC	1 cut(s)	602
AfiI	CCNNNNNNNGG	2 cut(s)	484, 695
AgeI	ACCGGT	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	425, 458, 754
AjnI	CCWGG	2 cut(s)	298, 688
AloI	GAACNNNNNNTCC	2 cut(s)	652, 684
AluBI	AGCT	4 cut(s)	183, 371, 419, 536
AluI	AGCT	4 cut(s)	183, 371, 419, 536
Alw21I	GWGCWC	1 cut(s)	939
Alw26I	GTCTC	1 cut(s)	438
Alw44I	GTGCAC	1 cut(s)	935
AlwI	GGATC	6 cut(s)	54, 69, 71, 668, 842, 855
AlwNI	CAGNNNCTG	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	861
Aor13HI	TCCGGA	1 cut(s)	625
AoxI	GGCC	2 cut(s)	108, 191
ApaLI	GTGCAC	1 cut(s)	935
ApeKI	GCWGC	3 cut(s)	183, 371, 496
ApoI	RAATTY	2 cut(s)	165, 811
AsiGI	ACCGGT	1 cut(s)	246
Asp700I	GAANNNNTTC	2 cut(s)	384, 519
AsuC2I	CCSGG	2 cut(s)	190, 783
AsuHPI	GGTGA	1 cut(s)	905
AvaI	CYCGRG	1 cut(s)	861
BaeGI	GKGCMC	1 cut(s)	939
BamHI	GGATCC	1 cut(s)	847
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	939
BbvI	GCAGC	3 cut(s)	170, 358, 508
BccI	CCATC	2 cut(s)	31, 344
BciT130I	CCWGG	2 cut(s)	300, 690
BcnI	CCSGG	2 cut(s)	190, 783
BcoDI	GTCTC	1 cut(s)	438
BfaI	CTAG	1 cut(s)	940
BisI	GCNGC	3 cut(s)	184, 372, 497
BlsI	GCNGC	3 cut(s)	185, 373, 498
Bme1390I	CCNGG	4 cut(s)	190, 300, 690, 783
BmeT110I	CYCGRG	1 cut(s)	861
BmiI	GGNNCC	2 cut(s)	733, 849
BmrFI	CCNGG	4 cut(s)	190, 300, 690, 783
BmsI	GCATC	2 cut(s)	418, 532
BpiI	GAAGAC	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	290
Bpu10I	CCTNAGC	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	838
BpuMI	CCSGG	2 cut(s)	190, 783
Bsa29I	ATCGAT	1 cut(s)	585
BsaJI	CCNNGG	5 cut(s)	188, 298, 402, 689, 843
BsaWI	WCCGGW	2 cut(s)	246, 625
Bsc4I	CCNNNNNNNGG	2 cut(s)	484, 695
Bse118I	RCCGGY	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	63
BseAI	TCCGGA	1 cut(s)	625
BseBI	CCWGG	2 cut(s)	300, 690
BseCI	ATCGAT	1 cut(s)	585
BseDI	CCNNGG	5 cut(s)	188, 298, 402, 689, 843
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	2 cut(s)	484, 695
BseMII	CTCAG	3 cut(s)	41, 56, 83
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	835
BseSI	GKGCMC	1 cut(s)	939
BseXI	GCAGC	3 cut(s)	170, 358, 508
BshFI	GGCC	2 cut(s)	110, 193
BshTI	ACCGGT	1 cut(s)	246
BshVI	ATCGAT	1 cut(s)	585
BsiHKAI	GWGCWC	1 cut(s)	939
BsiHKCI	CYCGRG	1 cut(s)	861
BsiSI	CCGG	4 cut(s)	190, 247, 626, 783
BslFI	GGGAC	2 cut(s)	647, 765
BslI	CCNNNNNNNGG	2 cut(s)	484, 695
BsmAI	GTCTC	1 cut(s)	438
BsmFI	GGGAC	2 cut(s)	647, 765
BsnI	GGCC	2 cut(s)	110, 193
BsoBI	CYCGRG	1 cut(s)	861
Bsp1286I	GDGCHC	1 cut(s)	939
Bsp13I	TCCGGA	1 cut(s)	625
Bsp143I	GATC	6 cut(s)	46, 61, 76, 114, 660, 847
BspACI	CCGC	1 cut(s)	744
BspANI	GGCC	2 cut(s)	110, 193
BspCNI	CTCAG	3 cut(s)	42, 55, 82
BspDI	ATCGAT	1 cut(s)	585
BspEI	TCCGGA	1 cut(s)	625
BspLI	GGNNCC	2 cut(s)	733, 849
BspPI	GGATC	6 cut(s)	54, 69, 71, 668, 842, 855
BsrFI	RCCGGY	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	63
BssAI	RCCGGY	1 cut(s)	246
BssECI	CCNNGG	5 cut(s)	188, 298, 402, 689, 843
BssMI	GATC	6 cut(s)	46, 61, 76, 114, 660, 847
BssT1I	CCWWGG	2 cut(s)	402, 843
Bst2UI	CCWGG	2 cut(s)	300, 690
Bst4CI	ACNGT	2 cut(s)	384, 532
BstDEI	CTNAG	4 cut(s)	42, 50, 69, 740
BstF5I	GGATG	1 cut(s)	355
BstKTI	GATC	6 cut(s)	49, 64, 79, 117, 663, 850
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	6 cut(s)	46, 61, 76, 114, 660, 847
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 542
BstNI	CCWGG	2 cut(s)	300, 690
BstSCI	CCNGG	4 cut(s)	188, 298, 688, 781
BstSLI	GKGCMC	1 cut(s)	939
BstV1I	GCAGC	3 cut(s)	170, 358, 508
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	4 cut(s)	46, 61, 76, 847
BstYI	RGATCY	4 cut(s)	46, 61, 76, 847
Bsu15I	ATCGAT	1 cut(s)	585
BsuRI	GGCC	2 cut(s)	110, 193
BsuTUI	ATCGAT	1 cut(s)	585
BtsCI	GGATG	1 cut(s)	355
CaiI	CAGNNNCTG	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	246
ClaI	ATCGAT	1 cut(s)	585
Csp6I	GTAC	1 cut(s)	601
CspAI	ACCGGT	1 cut(s)	246
CviAII	CATG	2 cut(s)	137, 146
CviQI	GTAC	1 cut(s)	601
DdeI	CTNAG	4 cut(s)	42, 50, 69, 740
DpnI	GATC	6 cut(s)	48, 63, 78, 116, 662, 849
DpnII	GATC	6 cut(s)	46, 61, 76, 114, 660, 847
Eco130I	CCWWGG	2 cut(s)	402, 843
Eco57I	CTGAAG	2 cut(s)	558, 593
Eco88I	CYCGRG	1 cut(s)	861
EcoRII	CCWGG	2 cut(s)	298, 688
EcoT14I	CCWWGG	2 cut(s)	402, 843
ErhI	CCWWGG	2 cut(s)	402, 843
FaeI	CATG	2 cut(s)	140, 149
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FaqI	GGGAC	2 cut(s)	647, 765
FatI	CATG	2 cut(s)	136, 145
Fnu4HI	GCNGC	3 cut(s)	184, 372, 497
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	3 cut(s)	184, 372, 497
FspBI	CTAG	1 cut(s)	940
GluI	GCNGC	3 cut(s)	184, 372, 497
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	110, 193
HapII	CCGG	4 cut(s)	190, 247, 626, 783
Hin1II	CATG	2 cut(s)	140, 149
HincII	GTYRAC	2 cut(s)	469, 682
HindII	GTYRAC	2 cut(s)	469, 682
HinfI	GANTC	1 cut(s)	859
HpaII	CCGG	4 cut(s)	190, 247, 626, 783
HphI	GGTGA	1 cut(s)	905
Hpy166II	GTNNAC	4 cut(s)	469, 595, 682, 937
Hpy188I	TCNGA	3 cut(s)	51, 261, 479
Hpy188III	TCNNGA	6 cut(s)	44, 305, 413, 610, 626, 817
Hpy8I	GTNNAC	4 cut(s)	469, 595, 682, 937
HpyAV	CCTTC	4 cut(s)	478, 505, 707, 746
HpyCH4III	ACNGT	2 cut(s)	384, 532
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	3 cut(s)	545, 923, 937
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 542
HpyF3I	CTNAG	4 cut(s)	42, 50, 69, 740
HpySE526I	ACGT	1 cut(s)	667
Hsp92II	CATG	2 cut(s)	140, 149
Kpn2I	TCCGGA	1 cut(s)	625
Kzo9I	GATC	6 cut(s)	46, 61, 76, 114, 660, 847
LmnI	GCTCC	2 cut(s)	353, 406
Lsp1109I	GCAGC	3 cut(s)	170, 358, 508
LweI	GCATC	2 cut(s)	418, 532
MaeI	CTAG	1 cut(s)	940
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	3 cut(s)	242, 302, 357
MalI	GATC	6 cut(s)	48, 63, 78, 116, 662, 849
MboI	GATC	6 cut(s)	46, 61, 76, 114, 660, 847
MboII	GAAGA	6 cut(s)	19, 25, 28, 31, 239, 551
MfeI	CAATTG	2 cut(s)	549, 764
MflI	RGATCY	4 cut(s)	46, 61, 76, 847
MhlI	GDGCHC	1 cut(s)	939
MluCI	AATT	7 cut(s)	165, 501, 549, 764, 811, 872, 926
MlyI	GAGTC	1 cut(s)	853
MnlI	CCTC	9 cut(s)	258, 651, 657, 766, 800, 813, 816, 857, 925
MroI	TCCGGA	1 cut(s)	625
MroXI	GAANNNNTTC	2 cut(s)	384, 519
MseI	TTAA	2 cut(s)	330, 438
MslI	CAYNNNNRTG	1 cut(s)	150
MspI	CCGG	4 cut(s)	190, 247, 626, 783
MspR9I	CCNGG	4 cut(s)	190, 300, 690, 783
MunI	CAATTG	2 cut(s)	549, 764
MvaI	CCWGG	2 cut(s)	300, 690
MwoI	GCNNNNNNNGC	2 cut(s)	317, 542
NciI	CCSGG	2 cut(s)	190, 783
NdeII	GATC	6 cut(s)	46, 61, 76, 114, 660, 847
NlaIII	CATG	2 cut(s)	140, 149
NlaIV	GGNNCC	2 cut(s)	733, 849
NmuCI	GTSAC	2 cut(s)	242, 302
PaeR7I	CTCGAG	1 cut(s)	861
PdmI	GAANNNNTTC	2 cut(s)	384, 519
PflFI	GACNNNGTC	1 cut(s)	473
PinAI	ACCGGT	1 cut(s)	246
PkrI	GCNGC	3 cut(s)	185, 373, 498
PleI	GAGTC	1 cut(s)	853
PpsI	GAGTC	1 cut(s)	853
Psp6I	CCWGG	2 cut(s)	298, 688
PspGI	CCWGG	2 cut(s)	298, 688
PspN4I	GGNNCC	2 cut(s)	733, 849
PspXI	VCTCGAGB	1 cut(s)	861
PstNI	CAGNNNCTG	1 cut(s)	49
PsuI	RGATCY	4 cut(s)	46, 61, 76, 847
PsyI	GACNNNGTC	1 cut(s)	473
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	330, 438
SatI	GCNGC	3 cut(s)	184, 372, 497
Sau3AI	GATC	6 cut(s)	46, 61, 76, 114, 660, 847
SchI	GAGTC	1 cut(s)	853
ScrFI	CCNGG	4 cut(s)	190, 300, 690, 783
SduI	GDGCHC	1 cut(s)	939
SfaNI	GCATC	2 cut(s)	418, 532
Sfr274I	CTCGAG	1 cut(s)	861
SlaI	CTCGAG	1 cut(s)	861
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	2 cut(s)	817, 861
SmoI	CTYRAG	2 cut(s)	817, 861
Sse9I	AATT	7 cut(s)	165, 501, 549, 764, 811, 872, 926
SsiI	CCGC	1 cut(s)	744
SspMI	CTAG	1 cut(s)	940
StyD4I	CCNGG	4 cut(s)	188, 298, 688, 781
StyI	CCWWGG	2 cut(s)	402, 843
TaaI	ACNGT	2 cut(s)	384, 532
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	4 cut(s)	5, 585, 771, 862
TasI	AATT	7 cut(s)	165, 501, 549, 764, 811, 872, 926
TatI	WGTACW	1 cut(s)	600
Tru1I	TTAA	2 cut(s)	330, 438
Tru9I	TTAA	2 cut(s)	330, 438
TseFI	GTSAC	2 cut(s)	242, 302
TseI	GCWGC	3 cut(s)	183, 371, 496
Tsp45I	GTSAC	2 cut(s)	242, 302
TspDTI	ATGAA	2 cut(s)	26, 524
Tth111I	GACNNNGTC	1 cut(s)	473
VneI	GTGCAC	1 cut(s)	935
XapI	RAATTY	2 cut(s)	165, 811
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	861
XmnI	GAANNNNTTC	2 cut(s)	384, 519
XspI	CTAG	1 cut(s)	940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.