Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013757

Physical Location & Seq

Genomic Coordinates Reverse (-)

55986037 .. 55987137

Gene Structure 1101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019723

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGATGTAGTTGATGAGCACATCGTCAAAAATATCCCAGTTCCACAAAGGGACTTGGCCTCACCTCCTTATATTACAATTATTCATTCTTTTGACGTCAACAAATCTGGGTATGAGATTGATCGCTTGAGAGGCGGTGTGGTGGGTGGAACCAGGGTCAGGGGTGTTGTGAAACTGAACCACTTGATTGAGGTTTGCCCGGTGAAGGTTGAAAAGGACGAGAACGACAACTTCAAATCCACGCCATTATATTCTAGACTGGTTCTTGGTGATGTGGAGTCACTTCCTGATGTATTTGTACAACTTGAAGTGAACTTCTTCGTCTTTAAAAAGGTGTTGGGGATGGGAAATCAAGCAGGGATCAGAAGGTGGCCATCAGTCAAAGGATCGACAAGCTGTGGCGTCTTATTGATCTGGGATGATGTTTGGATCTGTATTCTTTTTGCTTCCCTAAGCTTTTTGGTTTCATGTGTAGAGAAGCAGTACTTCGAGGCGCCAAATGTTGAGACTGCTGCTGTTGGTTGCAGCAACTGTTGCAGTGCAAGCTATGTGAGTTCAATTTCAATGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

191

Amino Acids

21.02

Weight (kDa)

5.61

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013757)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138081 RchiOBHm_Chr2g0138091 RchiOBHm_Chr6g0259921
rosa_laevigata	RLG00000019718 RLG00000019719 RLG00000019723 RLG00000019724
rosa_multiflora	Rmu_sc0004576.1_g000021 Rmu_sc0009049.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106500 Rroxscaffold_2G00106530
rosa_rugosa	Rorug02G0349500 Rorug05G0591400
rosa_samantha	Rh2AG396200 Rh2CG382700 Rh6BG103700 Rh6CG097000 Rh6DG090700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	99
AccB1I	GGYRCC	1 cut(s)	493
AciI	CCGC	1 cut(s)	135
AclWI	GGATC	3 cut(s)	368, 394, 437
AcoI	YGGCCR	1 cut(s)	371
AcyI	GRCGYC	3 cut(s)	96, 402, 494
AfaI	GTAC	2 cut(s)	300, 485
AfiI	CCNNNNNNNGG	2 cut(s)	159, 205
AgsI	TTSAA	5 cut(s)	212, 235, 308, 558, 564
AjnI	CCWGG	1 cut(s)	152
AluBI	AGCT	3 cut(s)	396, 456, 546
AluI	AGCT	3 cut(s)	396, 456, 546
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	3 cut(s)	368, 394, 437
AlwNI	CAGNNNCTG	1 cut(s)	531
AoxI	GGCC	2 cut(s)	57, 371
ApeKI	GCWGC	2 cut(s)	512, 525
Asp700I	GAANNNNTTC	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	496
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	3 cut(s)	54, 214, 281
BalI	TGGCCA	1 cut(s)	373
BanI	GGYRCC	1 cut(s)	493
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	499, 537
BccI	CCATC	2 cut(s)	337, 382
BciT130I	CCWGG	1 cut(s)	154
BcnI	CCSGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	500
BfaI	CTAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	497
BisI	GCNGC	2 cut(s)	513, 526
BlsI	GCNGC	2 cut(s)	514, 527
BmcAI	AGTACT	1 cut(s)	485
Bme1390I	CCNGG	2 cut(s)	154, 200
BmiI	GGNNCC	2 cut(s)	151, 495
BmrFI	CCNGG	2 cut(s)	154, 200
BmrI	ACTGGG	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	148
BpuMI	CCSGG	1 cut(s)	200
BsaHI	GRCGYC	3 cut(s)	96, 402, 494
BsaJI	CCNNGG	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 205
Bse1I	ACTGG	2 cut(s)	38, 264
BseBI	CCWGG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	153
BseGI	GGATG	3 cut(s)	10, 348, 424
BseLI	CCNNNNNNNGG	2 cut(s)	159, 205
BseNI	ACTGG	2 cut(s)	38, 264
BseXI	GCAGC	2 cut(s)	499, 537
BshFI	GGCC	2 cut(s)	59, 373
BshNI	GGYRCC	1 cut(s)	493
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	159, 205
BsmAI	GTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	59, 373
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp1407I	TGTACA	1 cut(s)	298
Bsp143I	GATC	5 cut(s)	121, 360, 386, 411, 429
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	2 cut(s)	59, 373
BspLI	GGNNCC	2 cut(s)	151, 495
BspPI	GGATC	3 cut(s)	368, 394, 437
BspT107I	GGYRCC	1 cut(s)	493
BsrGI	TGTACA	1 cut(s)	298
BsrI	ACTGG	2 cut(s)	38, 264
BssECI	CCNNGG	1 cut(s)	153
BssMI	GATC	5 cut(s)	121, 360, 386, 411, 429
BssNI	GRCGYC	3 cut(s)	96, 402, 494
Bst2UI	CCWGG	1 cut(s)	154
Bst4CI	ACNGT	1 cut(s)	533
BstACI	GRCGYC	3 cut(s)	96, 402, 494
BstAPI	GCANNNNNTGC	1 cut(s)	534
BstAUI	TGTACA	1 cut(s)	298
BstC8I	GCNNGC	1 cut(s)	544
BstDEI	CTNAG	1 cut(s)	452
BstF5I	GGATG	3 cut(s)	10, 348, 424
BstH2I	RGCGCY	1 cut(s)	497
BstHHI	GCGC	1 cut(s)	496
BstKTI	GATC	5 cut(s)	124, 363, 389, 414, 432
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	5 cut(s)	121, 360, 386, 411, 429
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 534, 543
BstNI	CCWGG	1 cut(s)	154
BstSCI	CCNGG	2 cut(s)	152, 198
BstV1I	GCAGC	2 cut(s)	499, 537
BstX2I	RGATCY	1 cut(s)	429
BstYI	RGATCY	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	59, 373
BtsCI	GGATG	3 cut(s)	10, 348, 424
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	1 cut(s)	544
Cac8I	GCNNGC	1 cut(s)	544
CaiI	CAGNNNCTG	1 cut(s)	531
CfoI	GCGC	1 cut(s)	496
CseI	GACGC	1 cut(s)	391
Csp6I	GTAC	2 cut(s)	299, 484
CviAII	CATG	1 cut(s)	468
CviJI	RGCY	5 cut(s)	59, 373, 396, 456, 546
CviKI_1	RGCY	5 cut(s)	59, 373, 396, 456, 546
CviQI	GTAC	2 cut(s)	299, 484
DdeI	CTNAG	1 cut(s)	452
DinI	GGCGCC	1 cut(s)	495
DpnI	GATC	5 cut(s)	123, 362, 388, 413, 431
DpnII	GATC	5 cut(s)	121, 360, 386, 411, 429
DraI	TTTAAA	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	371
EcoRII	CCWGG	1 cut(s)	152
EgeI	GGCGCC	1 cut(s)	495
EheI	GGCGCC	1 cut(s)	495
FaeI	CATG	1 cut(s)	471
FaiI	YATR	5 cut(s)	72, 114, 250, 469, 549
FalI	AAGNNNNNCTT	2 cut(s)	470, 502
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	1 cut(s)	467
Fnu4HI	GCNGC	2 cut(s)	513, 526
FokI	GGATG	3 cut(s)	17, 355, 431
Fsp4HI	GCNGC	2 cut(s)	513, 526
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	495
GluI	GCNGC	2 cut(s)	513, 526
HaeII	RGCGCY	1 cut(s)	497
HaeIII	GGCC	2 cut(s)	59, 373
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	1 cut(s)	391
HhaI	GCGC	1 cut(s)	496
Hin1I	GRCGYC	3 cut(s)	96, 402, 494
Hin1II	CATG	1 cut(s)	471
Hin6I	GCGC	1 cut(s)	494
HinP1I	GCGC	1 cut(s)	494
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	454
HinfI	GANTC	1 cut(s)	278
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	3 cut(s)	54, 214, 281
Hpy166II	GTNNAC	2 cut(s)	100, 313
Hpy188I	TCNGA	1 cut(s)	365
Hpy188III	TCNNGA	2 cut(s)	255, 287
Hpy8I	GTNNAC	2 cut(s)	100, 313
HpyAV	CCTTC	2 cut(s)	199, 360
HpyCH4III	ACNGT	1 cut(s)	533
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	4 cut(s)	525, 537, 542, 568
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 534, 543
HpyF3I	CTNAG	1 cut(s)	452
HpySE526I	ACGT	1 cut(s)	96
Hsp92I	GRCGYC	3 cut(s)	96, 402, 494
Hsp92II	CATG	1 cut(s)	471
HspAI	GCGC	1 cut(s)	494
KasI	GGCGCC	1 cut(s)	493
Kzo9I	GATC	5 cut(s)	121, 360, 386, 411, 429
Lsp1109I	GCAGC	2 cut(s)	499, 537
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	279
MalI	GATC	5 cut(s)	123, 362, 388, 413, 431
MboI	GATC	5 cut(s)	121, 360, 386, 411, 429
MboII	GAAGA	1 cut(s)	310
MflI	RGATCY	1 cut(s)	429
MhlI	GDGCHC	1 cut(s)	21
MlsI	TGGCCA	1 cut(s)	373
MluCI	AATT	2 cut(s)	78, 558
MluNI	TGGCCA	1 cut(s)	373
Mly113I	GGCGCC	1 cut(s)	494
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	5 cut(s)	70, 75, 125, 184, 484
Mox20I	TGGCCA	1 cut(s)	373
MroXI	GAANNNNTTC	1 cut(s)	317
MscI	TGGCCA	1 cut(s)	373
MseI	TTAA	1 cut(s)	327
Msp20I	TGGCCA	1 cut(s)	373
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	154, 200
MvaI	CCWGG	1 cut(s)	154
MwoI	GCNNNNNNNGC	3 cut(s)	132, 534, 543
NarI	GGCGCC	1 cut(s)	494
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	5 cut(s)	121, 360, 386, 411, 429
NlaIII	CATG	1 cut(s)	471
NlaIV	GGNNCC	2 cut(s)	151, 495
NmuCI	GTSAC	1 cut(s)	279
PdmI	GAANNNNTTC	1 cut(s)	317
PkrI	GCNGC	2 cut(s)	514, 527
PleI	GAGTC	1 cut(s)	286
PluTI	GGCGCC	1 cut(s)	497
PpsI	GAGTC	1 cut(s)	286
Psp6I	CCWGG	1 cut(s)	152
PspGI	CCWGG	1 cut(s)	152
PspN4I	GGNNCC	2 cut(s)	151, 495
PstNI	CAGNNNCTG	1 cut(s)	531
PsuI	RGATCY	1 cut(s)	429
RsaI	GTAC	2 cut(s)	300, 485
RsaNI	GTAC	2 cut(s)	299, 484
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	2 cut(s)	513, 526
Sau3AI	GATC	5 cut(s)	121, 360, 386, 411, 429
ScaI	AGTACT	1 cut(s)	485
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	2 cut(s)	154, 200
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	9 cut(s)	67, 99, 195, 210, 336, 371, 398, 458, 548
SfoI	GGCGCC	1 cut(s)	495
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	2 cut(s)	78, 558
SsiI	CCGC	1 cut(s)	135
SspDI	GGCGCC	1 cut(s)	493
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	2 cut(s)	152, 198
TaaI	ACNGT	1 cut(s)	533
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	2 cut(s)	389, 489
TasI	AATT	2 cut(s)	78, 558
TatI	WGTACW	2 cut(s)	298, 483
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	544
TseFI	GTSAC	1 cut(s)	279
TseI	GCWGC	2 cut(s)	512, 525
Tsp45I	GTSAC	1 cut(s)	279
TspDTI	ATGAA	2 cut(s)	74, 456
TspRI	CASTG	1 cut(s)	544
XbaI	TCTAGA	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	317
XspI	CTAG	1 cut(s)	255
ZraI	GACGTC	1 cut(s)	97
ZrmI	AGTACT	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.