Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0013757

Physical Location & Seq

Genomic Coordinates Reverse (-)

16056950 .. 16075621

Gene Structure 18672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG103700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAAAAATACAAACCATCCTACAGAACCAGAACACAAGAACACAAAAGATGAAGCTCGTGTCATGTGGCTCATGGTAAGTCAACGGTGGTCAATGCAATTTCGGGGGTTCAGACAGTTCGTTTTAAACAGGAGCTGGAGCACATGCAACATAATAACCATAAAAACAGGATATGCTAATGCCAAAATTTACAAGTGTGGTAGCTGCCCCCGGCCTGACTGCTACAAGTCTTATGGTAGTGGAAAGGAAGACAATCCTATCTGTGACCGGTGTGGAAATCAGATGAGGCTGGAGAGAGATGTGTCCTTTGTAGATTGCCCTGGTCACGAAGCACTAATGGCTACTATGCTTAATGGTGTGTCCATTATGGATGGAGCGTTACTTGTTGTAGCTGCTGACGAACAGTTTCCCCAAGAACAAACCAAGGAGCATCTGGAAGCTGTTGAAATCATGTCTCTTAAACACAACATTGTGCTTCAACACAAAGTTGACCTTGTCCGAGAGAAGACAATAGAGCAACGAATTGAGATGAAGGAATGGTTTAGTGGCACGGTAGCTGAAGATGCAACAATTGTGCCTATTGTTGCTCAACTGAAGTATAATATCGATGTAGTGAACGAGTACATTGTCAAGAAAATCCCCATTCCGGAAAGGGACTTTGCTTCGCCTCCTTATATGAGGATCATACGTTCGTTTGATGTCAACAAACCTGGGTTTGGGATTGATGACATAGAAGAAGCTGTGGCTGGTGGAACCCTTCTTAGGGGTGTTTTGAAACTGAACCAATTGGTCGAGGTTTGTCCCGGTCTTGTTGTCAAAGACGAGAGAGGAAATATCTTGAGGAGGTCTGGGGTTGGCACAACCTTGGATCCTGCTTTGACTCGAGGCGATAAATTGGTGGGTCAAGTTGTTGGTGATGTTGGCTCACTCCCTGATGTGCATGCACAACTTGAGGTGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

320

Amino Acids

35.94

Weight (kDa)

6.1

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	98 - 214	9.2e-17	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013757)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138081 RchiOBHm_Chr2g0138091 RchiOBHm_Chr6g0259921
rosa_laevigata	RLG00000019718 RLG00000019719 RLG00000019723 RLG00000019724
rosa_multiflora	Rmu_sc0004576.1_g000021 Rmu_sc0009049.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106500 Rroxscaffold_2G00106530
rosa_rugosa	Rorug02G0349500 Rorug05G0591400
rosa_samantha	Rh2AG396200 Rh2CG382700 Rh6BG103700 Rh6CG097000 Rh6DG090700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	646
AclWI	GGATC	3 cut(s)	689, 863, 876
AcsI	RAATTY	1 cut(s)	186
AcuI	CTGAAG	2 cut(s)	579, 614
AfaI	GTAC	1 cut(s)	623
AfiI	CCNNNNNNNGG	4 cut(s)	646, 716, 762, 763
AgeI	ACCGGT	1 cut(s)	267
AgsI	TTSAA	3 cut(s)	446, 479, 775
AjnI	CCWGG	2 cut(s)	319, 709
AloI	GAACNNNNNNTCC	2 cut(s)	673, 705
AluBI	AGCT	7 cut(s)	56, 135, 204, 392, 440, 557, 740
AluI	AGCT	7 cut(s)	56, 135, 204, 392, 440, 557, 740
Alw21I	GWGCWC	2 cut(s)	143, 960
Alw26I	GTCTC	1 cut(s)	459
Alw44I	GTGCAC	1 cut(s)	956
AlwI	GGATC	3 cut(s)	689, 863, 876
AlwNI	CAGNNNCTG	1 cut(s)	135
Ama87I	CYCGRG	1 cut(s)	882
Aor13HI	TCCGGA	1 cut(s)	646
AoxI	GGCC	1 cut(s)	212
ApaLI	GTGCAC	1 cut(s)	956
ApeKI	GCWGC	2 cut(s)	204, 392
ApoI	RAATTY	1 cut(s)	186
AsiGI	ACCGGT	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	405
AsuC2I	CCSGG	2 cut(s)	211, 804
AsuHPI	GGTGA	1 cut(s)	926
AvaI	CYCGRG	1 cut(s)	882
BaeGI	GKGCMC	1 cut(s)	960
BamHI	GGATCC	1 cut(s)	868
BauI	CACGAG	1 cut(s)	57
BbsI	GAAGAC	2 cut(s)	255, 512
Bbv12I	GWGCWC	2 cut(s)	143, 960
BbvI	GCAGC	2 cut(s)	191, 379
BccI	CCATC	2 cut(s)	24, 365
BciT130I	CCWGG	2 cut(s)	321, 711
BcnI	CCSGG	2 cut(s)	211, 804
BcoDI	GTCTC	1 cut(s)	459
BfaI	CTAG	1 cut(s)	961
BfmI	CTRYAG	1 cut(s)	21
BisI	GCNGC	2 cut(s)	205, 393
BlsI	GCNGC	2 cut(s)	206, 394
Bme1390I	CCNGG	4 cut(s)	211, 321, 711, 804
BmeT110I	CYCGRG	1 cut(s)	882
BmiI	GGNNCC	2 cut(s)	754, 870
BmrFI	CCNGG	4 cut(s)	211, 321, 711, 804
BmsI	GCATC	2 cut(s)	439, 553
BpiI	GAAGAC	2 cut(s)	255, 512
BpmI	CTGGAG	2 cut(s)	157, 311
BpuEI	CTTGAG	1 cut(s)	859
BpuMI	CCSGG	2 cut(s)	211, 804
Bsa29I	ATCGAT	1 cut(s)	606
BsaJI	CCNNGG	5 cut(s)	209, 319, 423, 710, 864
BsaWI	WCCGGW	2 cut(s)	267, 646
Bsc4I	CCNNNNNNNGG	4 cut(s)	646, 716, 762, 763
Bse118I	RCCGGY	1 cut(s)	267
BseAI	TCCGGA	1 cut(s)	646
BseBI	CCWGG	2 cut(s)	321, 711
BseCI	ATCGAT	1 cut(s)	606
BseDI	CCNNGG	5 cut(s)	209, 319, 423, 710, 864
BseGI	GGATG	2 cut(s)	16, 376
BseLI	CCNNNNNNNGG	4 cut(s)	646, 716, 762, 763
BseRI	GAGGAG	1 cut(s)	856
BseSI	GKGCMC	1 cut(s)	960
BseXI	GCAGC	2 cut(s)	191, 379
BshFI	GGCC	1 cut(s)	214
BshTI	ACCGGT	1 cut(s)	267
BshVI	ATCGAT	1 cut(s)	606
BsiHKAI	GWGCWC	2 cut(s)	143, 960
BsiHKCI	CYCGRG	1 cut(s)	882
BsiSI	CCGG	4 cut(s)	211, 268, 647, 804
BslFI	GGGAC	2 cut(s)	668, 786
BslI	CCNNNNNNNGG	4 cut(s)	646, 716, 762, 763
BsmAI	GTCTC	1 cut(s)	459
BsmFI	GGGAC	2 cut(s)	668, 786
BsnI	GGCC	1 cut(s)	214
BsoBI	CYCGRG	1 cut(s)	882
Bsp1286I	GDGCHC	2 cut(s)	143, 960
Bsp13I	TCCGGA	1 cut(s)	646
Bsp143I	GATC	2 cut(s)	681, 868
BspANI	GGCC	1 cut(s)	214
BspDI	ATCGAT	1 cut(s)	606
BspEI	TCCGGA	1 cut(s)	646
BspLI	GGNNCC	2 cut(s)	754, 870
BspPI	GGATC	3 cut(s)	689, 863, 876
BsrFI	RCCGGY	1 cut(s)	267
BssAI	RCCGGY	1 cut(s)	267
BssECI	CCNNGG	5 cut(s)	209, 319, 423, 710, 864
BssMI	GATC	2 cut(s)	681, 868
BssSI	CACGAG	1 cut(s)	57
BssT1I	CCWWGG	2 cut(s)	423, 864
Bst2BI	CACGAG	1 cut(s)	57
Bst2UI	CCWGG	2 cut(s)	321, 711
Bst4CI	ACNGT	4 cut(s)	87, 117, 405, 553
BstC8I	GCNNGC	1 cut(s)	942
BstDEI	CTNAG	1 cut(s)	761
BstF5I	GGATG	2 cut(s)	16, 376
BstKTI	GATC	2 cut(s)	684, 871
BstMAI	GTCTC	1 cut(s)	459
BstMBI	GATC	2 cut(s)	681, 868
BstMWI	GCNNNNNNNGC	2 cut(s)	338, 563
BstNI	CCWGG	2 cut(s)	321, 711
BstNSI	RCATGY	2 cut(s)	147, 944
BstSCI	CCNGG	4 cut(s)	209, 319, 709, 802
BstSFI	CTRYAG	1 cut(s)	21
BstSLI	GKGCMC	1 cut(s)	960
BstV1I	GCAGC	2 cut(s)	191, 379
BstV2I	GAAGAC	2 cut(s)	255, 512
BstX2I	RGATCY	1 cut(s)	868
BstYI	RGATCY	1 cut(s)	868
Bsu15I	ATCGAT	1 cut(s)	606
BsuRI	GGCC	1 cut(s)	214
BsuTUI	ATCGAT	1 cut(s)	606
BtsCI	GGATG	2 cut(s)	16, 376
Cac8I	GCNNGC	1 cut(s)	942
CaiI	CAGNNNCTG	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	267
ClaI	ATCGAT	1 cut(s)	606
Csp6I	GTAC	1 cut(s)	622
CspAI	ACCGGT	1 cut(s)	267
CviAII	CATG	5 cut(s)	64, 73, 144, 451, 941
CviQI	GTAC	1 cut(s)	622
DdeI	CTNAG	1 cut(s)	761
DpnI	GATC	2 cut(s)	683, 870
DpnII	GATC	2 cut(s)	681, 868
DraI	TTTAAA	1 cut(s)	126
Eco130I	CCWWGG	2 cut(s)	423, 864
Eco57I	CTGAAG	2 cut(s)	579, 614
Eco88I	CYCGRG	1 cut(s)	882
EcoRII	CCWGG	2 cut(s)	319, 709
EcoT14I	CCWWGG	2 cut(s)	423, 864
ErhI	CCWWGG	2 cut(s)	423, 864
FaeI	CATG	5 cut(s)	67, 76, 147, 454, 944
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FaqI	GGGAC	2 cut(s)	668, 786
FatI	CATG	5 cut(s)	63, 72, 143, 450, 940
Fnu4HI	GCNGC	2 cut(s)	205, 393
FokI	GGATG	2 cut(s)	3, 383
Fsp4HI	GCNGC	2 cut(s)	205, 393
FspBI	CTAG	1 cut(s)	961
GluI	GCNGC	2 cut(s)	205, 393
GsuI	CTGGAG	2 cut(s)	157, 311
HaeIII	GGCC	1 cut(s)	214
HapII	CCGG	4 cut(s)	211, 268, 647, 804
Hin1II	CATG	5 cut(s)	67, 76, 147, 454, 944
HincII	GTYRAC	3 cut(s)	83, 490, 703
HindII	GTYRAC	3 cut(s)	83, 490, 703
HinfI	GANTC	1 cut(s)	880
HpaII	CCGG	4 cut(s)	211, 268, 647, 804
HphI	GGTGA	1 cut(s)	926
Hpy166II	GTNNAC	5 cut(s)	83, 490, 616, 703, 958
Hpy188I	TCNGA	3 cut(s)	113, 282, 500
Hpy188III	TCNNGA	5 cut(s)	326, 434, 631, 647, 838
Hpy8I	GTNNAC	5 cut(s)	83, 490, 616, 703, 958
HpyAV	CCTTC	2 cut(s)	526, 767
HpyCH4III	ACNGT	4 cut(s)	87, 117, 405, 553
HpyCH4IV	ACGT	1 cut(s)	688
HpyCH4V	TGCA	6 cut(s)	97, 147, 566, 940, 944, 958
HpyF10VI	GCNNNNNNNGC	2 cut(s)	338, 563
HpyF3I	CTNAG	1 cut(s)	761
HpySE526I	ACGT	1 cut(s)	688
Hsp92II	CATG	5 cut(s)	67, 76, 147, 454, 944
Kpn2I	TCCGGA	1 cut(s)	646
Kzo9I	GATC	2 cut(s)	681, 868
LmnI	GCTCC	4 cut(s)	132, 138, 374, 427
Lsp1109I	GCAGC	2 cut(s)	191, 379
LweI	GCATC	2 cut(s)	439, 553
MaeI	CTAG	1 cut(s)	961
MaeII	ACGT	1 cut(s)	688
MaeIII	GTNAC	3 cut(s)	263, 323, 378
MalI	GATC	2 cut(s)	683, 870
MboI	GATC	2 cut(s)	681, 868
MboII	GAAGA	4 cut(s)	260, 517, 572, 746
MfeI	CAATTG	2 cut(s)	570, 785
MflI	RGATCY	1 cut(s)	868
MhlI	GDGCHC	2 cut(s)	143, 960
MluCI	AATT	6 cut(s)	98, 186, 522, 570, 785, 893
MlyI	GAGTC	1 cut(s)	874
MnlI	CCTC	9 cut(s)	279, 672, 678, 787, 821, 834, 837, 878, 946
MroI	TCCGGA	1 cut(s)	646
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	3 cut(s)	125, 351, 459
MspI	CCGG	4 cut(s)	211, 268, 647, 804
MspR9I	CCNGG	4 cut(s)	211, 321, 711, 804
MunI	CAATTG	2 cut(s)	570, 785
MvaI	CCWGG	2 cut(s)	321, 711
MwoI	GCNNNNNNNGC	2 cut(s)	338, 563
NciI	CCSGG	2 cut(s)	211, 804
NdeII	GATC	2 cut(s)	681, 868
NlaIII	CATG	5 cut(s)	67, 76, 147, 454, 944
NlaIV	GGNNCC	2 cut(s)	754, 870
NmuCI	GTSAC	2 cut(s)	263, 323
NspI	RCATGY	2 cut(s)	147, 944
PaeI	GCATGC	1 cut(s)	944
PaeR7I	CTCGAG	1 cut(s)	882
PdmI	GAANNNNTTC	1 cut(s)	405
PflFI	GACNNNGTC	1 cut(s)	494
PinAI	ACCGGT	1 cut(s)	267
PkrI	GCNGC	2 cut(s)	206, 394
PleI	GAGTC	1 cut(s)	874
PpsI	GAGTC	1 cut(s)	874
Psp6I	CCWGG	2 cut(s)	319, 709
PspGI	CCWGG	2 cut(s)	319, 709
PspN4I	GGNNCC	2 cut(s)	754, 870
PspXI	VCTCGAGB	1 cut(s)	882
PstNI	CAGNNNCTG	1 cut(s)	135
PsuI	RGATCY	1 cut(s)	868
PsyI	GACNNNGTC	1 cut(s)	494
RsaI	GTAC	1 cut(s)	623
RsaNI	GTAC	1 cut(s)	622
SaqAI	TTAA	3 cut(s)	125, 351, 459
SatI	GCNGC	2 cut(s)	205, 393
Sau3AI	GATC	2 cut(s)	681, 868
SchI	GAGTC	1 cut(s)	874
ScrFI	CCNGG	4 cut(s)	211, 321, 711, 804
SduI	GDGCHC	2 cut(s)	143, 960
SfaNI	GCATC	2 cut(s)	439, 553
SfcI	CTRYAG	1 cut(s)	21
Sfr274I	CTCGAG	1 cut(s)	882
SlaI	CTCGAG	1 cut(s)	882
SmlI	CTYRAG	3 cut(s)	838, 882, 950
SmoI	CTYRAG	3 cut(s)	838, 882, 950
SphI	GCATGC	1 cut(s)	944
Sse9I	AATT	6 cut(s)	98, 186, 522, 570, 785, 893
SspMI	CTAG	1 cut(s)	961
StyD4I	CCNGG	4 cut(s)	209, 319, 709, 802
StyI	CCWWGG	2 cut(s)	423, 864
TaaI	ACNGT	4 cut(s)	87, 117, 405, 553
TaiI	ACGT	1 cut(s)	691
TaqI	TCGA	3 cut(s)	606, 792, 883
TasI	AATT	6 cut(s)	98, 186, 522, 570, 785, 893
TatI	WGTACW	1 cut(s)	621
Tru1I	TTAA	3 cut(s)	125, 351, 459
Tru9I	TTAA	3 cut(s)	125, 351, 459
TseFI	GTSAC	2 cut(s)	263, 323
TseI	GCWGC	2 cut(s)	204, 392
Tsp45I	GTSAC	2 cut(s)	263, 323
TspDTI	ATGAA	3 cut(s)	17, 66, 545
Tth111I	GACNNNGTC	1 cut(s)	494
VneI	GTGCAC	1 cut(s)	956
XapI	RAATTY	1 cut(s)	186
XceI	RCATGY	2 cut(s)	147, 944
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430
XhoI	CTCGAG	1 cut(s)	882
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	1 cut(s)	961

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.