Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009049.1

Orthogroup ID

OG0013757

Physical Location & Seq

Genomic Coordinates Reverse (-)

67111 .. 67989

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009049.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

atggtaagtcaacggtggtcaaggcaatttcgggggttcagacagttcgttttaaacaggagctggagcgcatgcaacataataaccataaaaacaggatatgctaatgccaaaatttacaagtgtggtagctgcccccggcctgactgctacaagtcttatggtagtggaaaggaagacaatcctatctgtgaccggtgtgggaatcagatgaggctggagagagatgtgtcctttgtagattgccctggtcacgaagcactaatggctactatgcttaatggtgtgtccattatggatggagcgttacttgttgtagctgctgacgaacagtttccccaagaacaaaccaaggagcatctggaagctgttgaaatcatgtctcttaaacacaacattgtgcttcaacacaaagttgaccttatccgagagaagacaatagagcagcgaattgagatgaaggaatggttccgtggcacggtagctgaagatgcaacaattgtgcctattgttgctcaactgaagtataatatcgatgtagtgaacgagtacattgtcaagaaaatccccattccggaaagggactttgcttcgcctccttgtatgaggatcatacgttcgtttgatgtcaacaaacctgggtttgggattgatgacatagaagcagctgtggctggtggaacccttcttaggggtgttttgaaactgaaccaattggtcgaggtttgtcccggtcttgttgtcaaagacgagagaggaaatttcttgaggtgcacgccattgtattttagaatagtttccttttttgctgaagaaaatgagatgcagtttgctgtgccaggaggtctggggttggcacaaccttggatcctgctttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

292

Amino Acids

33.0

Weight (kDa)

6.46

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013757)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138081 RchiOBHm_Chr2g0138091 RchiOBHm_Chr6g0259921
rosa_laevigata	RLG00000019718 RLG00000019719 RLG00000019723 RLG00000019724
rosa_multiflora	Rmu_sc0004576.1_g000021 Rmu_sc0009049.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106500 Rroxscaffold_2G00106530
rosa_rugosa	Rorug02G0349500 Rorug05G0591400
rosa_samantha	Rh2AG396200 Rh2CG382700 Rh6BG103700 Rh6CG097000 Rh6DG090700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	574
AclWI	GGATC	3 cut(s)	617, 862, 875
AcsI	RAATTY	2 cut(s)	114, 760
AcuI	CTGAAG	3 cut(s)	507, 542, 831
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	5 cut(s)	478, 574, 644, 690, 691
AgeI	ACCGGT	1 cut(s)	195
AgsI	TTSAA	3 cut(s)	374, 407, 703
AjnI	CCWGG	3 cut(s)	247, 637, 838
AloI	GAACNNNNNNTCC	2 cut(s)	601, 633
AluBI	AGCT	6 cut(s)	63, 132, 320, 368, 485, 668
AluI	AGCT	6 cut(s)	63, 132, 320, 368, 485, 668
Alw21I	GWGCWC	1 cut(s)	776
Alw26I	GTCTC	1 cut(s)	387
Alw44I	GTGCAC	1 cut(s)	772
AlwI	GGATC	3 cut(s)	617, 862, 875
AlwNI	CAGNNNCTG	1 cut(s)	63
Aor13HI	TCCGGA	1 cut(s)	574
AoxI	GGCC	1 cut(s)	140
ApaLI	GTGCAC	1 cut(s)	772
ApeKI	GCWGC	4 cut(s)	132, 320, 445, 665
ApoI	RAATTY	2 cut(s)	114, 760
AsiGI	ACCGGT	1 cut(s)	195
Asp700I	GAANNNNTTC	2 cut(s)	333, 796
AspLEI	GCGC	1 cut(s)	71
AsuC2I	CCSGG	2 cut(s)	139, 732
BaeGI	GKGCMC	1 cut(s)	776
BamHI	GGATCC	1 cut(s)	867
BbsI	GAAGAC	2 cut(s)	183, 440
Bbv12I	GWGCWC	1 cut(s)	776
BbvI	GCAGC	4 cut(s)	119, 307, 457, 677
BccI	CCATC	1 cut(s)	293
BciT130I	CCWGG	3 cut(s)	249, 639, 840
BcnI	CCSGG	2 cut(s)	139, 732
BcoDI	GTCTC	1 cut(s)	387
BisI	GCNGC	4 cut(s)	133, 321, 446, 666
BlsI	GCNGC	4 cut(s)	134, 322, 447, 667
Bme1390I	CCNGG	5 cut(s)	139, 249, 639, 732, 840
BmiI	GGNNCC	3 cut(s)	470, 682, 869
BmrFI	CCNGG	5 cut(s)	139, 249, 639, 732, 840
BmsI	GCATC	3 cut(s)	367, 481, 813
BpiI	GAAGAC	2 cut(s)	183, 440
BpmI	CTGGAG	2 cut(s)	85, 239
BpuEI	CTTGAG	1 cut(s)	787
BpuMI	CCSGG	2 cut(s)	139, 732
Bsa29I	ATCGAT	1 cut(s)	534
BsaJI	CCNNGG	6 cut(s)	137, 247, 351, 472, 638, 863
BsaWI	WCCGGW	2 cut(s)	195, 574
Bsc4I	CCNNNNNNNGG	5 cut(s)	478, 574, 644, 690, 691
Bse118I	RCCGGY	1 cut(s)	195
BseAI	TCCGGA	1 cut(s)	574
BseBI	CCWGG	3 cut(s)	249, 639, 840
BseCI	ATCGAT	1 cut(s)	534
BseDI	CCNNGG	6 cut(s)	137, 247, 351, 472, 638, 863
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	5 cut(s)	478, 574, 644, 690, 691
BseSI	GKGCMC	1 cut(s)	776
BseXI	GCAGC	4 cut(s)	119, 307, 457, 677
BshFI	GGCC	1 cut(s)	142
BshTI	ACCGGT	1 cut(s)	195
BshVI	ATCGAT	1 cut(s)	534
BsiHKAI	GWGCWC	1 cut(s)	776
BsiSI	CCGG	4 cut(s)	139, 196, 575, 732
BslFI	GGGAC	2 cut(s)	596, 714
BslI	CCNNNNNNNGG	5 cut(s)	478, 574, 644, 690, 691
BsmAI	GTCTC	1 cut(s)	387
BsmFI	GGGAC	2 cut(s)	596, 714
BsnI	GGCC	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	776
Bsp13I	TCCGGA	1 cut(s)	574
Bsp143I	GATC	2 cut(s)	609, 867
BspANI	GGCC	1 cut(s)	142
BspDI	ATCGAT	1 cut(s)	534
BspEI	TCCGGA	1 cut(s)	574
BspLI	GGNNCC	3 cut(s)	470, 682, 869
BspPI	GGATC	3 cut(s)	617, 862, 875
BsrFI	RCCGGY	1 cut(s)	195
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	6 cut(s)	137, 247, 351, 472, 638, 863
BssMI	GATC	2 cut(s)	609, 867
BssT1I	CCWWGG	2 cut(s)	351, 863
Bst2UI	CCWGG	3 cut(s)	249, 639, 840
Bst4CI	ACNGT	4 cut(s)	15, 45, 333, 481
BstC8I	GCNNGC	2 cut(s)	73, 776
BstDEI	CTNAG	1 cut(s)	689
BstDSI	CCRYGG	1 cut(s)	472
BstF5I	GGATG	1 cut(s)	304
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	2 cut(s)	612, 870
BstMAI	GTCTC	1 cut(s)	387
BstMBI	GATC	2 cut(s)	609, 867
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 491, 671
BstNI	CCWGG	3 cut(s)	249, 639, 840
BstNSI	RCATGY	1 cut(s)	75
BstSCI	CCNGG	5 cut(s)	137, 247, 637, 730, 838
BstSLI	GKGCMC	1 cut(s)	776
BstV1I	GCAGC	4 cut(s)	119, 307, 457, 677
BstV2I	GAAGAC	2 cut(s)	183, 440
BstX2I	RGATCY	1 cut(s)	867
BstYI	RGATCY	1 cut(s)	867
Bsu15I	ATCGAT	1 cut(s)	534
BsuRI	GGCC	1 cut(s)	142
BsuTUI	ATCGAT	1 cut(s)	534
BtgI	CCRYGG	1 cut(s)	472
BtsCI	GGATG	1 cut(s)	304
Cac8I	GCNNGC	2 cut(s)	73, 776
CaiI	CAGNNNCTG	1 cut(s)	63
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	195
ClaI	ATCGAT	1 cut(s)	534
Csp6I	GTAC	1 cut(s)	550
CspAI	ACCGGT	1 cut(s)	195
CviAII	CATG	2 cut(s)	72, 379
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	1 cut(s)	689
DpnI	GATC	2 cut(s)	611, 869
DpnII	GATC	2 cut(s)	609, 867
DraI	TTTAAA	1 cut(s)	54
Eco130I	CCWWGG	2 cut(s)	351, 863
Eco57I	CTGAAG	3 cut(s)	507, 542, 831
EcoRII	CCWGG	3 cut(s)	247, 637, 838
EcoT14I	CCWWGG	2 cut(s)	351, 863
ErhI	CCWWGG	2 cut(s)	351, 863
FaeI	CATG	2 cut(s)	75, 382
FalI	AAGNNNNNCTT	2 cut(s)	405, 437
FaqI	GGGAC	2 cut(s)	596, 714
FatI	CATG	2 cut(s)	71, 378
Fnu4HI	GCNGC	4 cut(s)	133, 321, 446, 666
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	4 cut(s)	133, 321, 446, 666
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	4 cut(s)	133, 321, 446, 666
GsuI	CTGGAG	2 cut(s)	85, 239
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	4 cut(s)	139, 196, 575, 732
HhaI	GCGC	1 cut(s)	71
Hin1II	CATG	2 cut(s)	75, 382
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HincII	GTYRAC	3 cut(s)	11, 418, 631
HindII	GTYRAC	3 cut(s)	11, 418, 631
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	4 cut(s)	139, 196, 575, 732
Hpy166II	GTNNAC	5 cut(s)	11, 418, 544, 631, 774
Hpy188I	TCNGA	3 cut(s)	41, 210, 428
Hpy188III	TCNNGA	5 cut(s)	254, 362, 559, 575, 766
Hpy8I	GTNNAC	5 cut(s)	11, 418, 544, 631, 774
HpyAV	CCTTC	2 cut(s)	454, 695
HpyCH4III	ACNGT	4 cut(s)	15, 45, 333, 481
HpyCH4IV	ACGT	1 cut(s)	616
HpyCH4V	TGCA	4 cut(s)	75, 494, 774, 826
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 491, 671
HpyF3I	CTNAG	1 cut(s)	689
HpySE526I	ACGT	1 cut(s)	616
Hsp92II	CATG	2 cut(s)	75, 382
HspAI	GCGC	1 cut(s)	69
Kpn2I	TCCGGA	1 cut(s)	574
Kzo9I	GATC	2 cut(s)	609, 867
LmnI	GCTCC	4 cut(s)	60, 66, 302, 355
Lsp1109I	GCAGC	4 cut(s)	119, 307, 457, 677
LweI	GCATC	3 cut(s)	367, 481, 813
MaeII	ACGT	1 cut(s)	616
MaeIII	GTNAC	3 cut(s)	191, 251, 306
MalI	GATC	2 cut(s)	611, 869
MboI	GATC	2 cut(s)	609, 867
MboII	GAAGA	4 cut(s)	188, 445, 500, 824
MfeI	CAATTG	2 cut(s)	498, 713
MflI	RGATCY	1 cut(s)	867
MhlI	GDGCHC	1 cut(s)	776
MluCI	AATT	6 cut(s)	26, 114, 450, 498, 713, 760
MnlI	CCTC	7 cut(s)	207, 600, 606, 715, 749, 762, 836
MroI	TCCGGA	1 cut(s)	574
MroXI	GAANNNNTTC	2 cut(s)	333, 796
MseI	TTAA	3 cut(s)	53, 279, 387
MspA1I	CMGCKG	1 cut(s)	668
MspI	CCGG	4 cut(s)	139, 196, 575, 732
MspR9I	CCNGG	5 cut(s)	139, 249, 639, 732, 840
MunI	CAATTG	2 cut(s)	498, 713
MvaI	CCWGG	3 cut(s)	249, 639, 840
MwoI	GCNNNNNNNGC	3 cut(s)	266, 491, 671
NciI	CCSGG	2 cut(s)	139, 732
NdeII	GATC	2 cut(s)	609, 867
NlaIII	CATG	2 cut(s)	75, 382
NlaIV	GGNNCC	3 cut(s)	470, 682, 869
NmuCI	GTSAC	2 cut(s)	191, 251
NspI	RCATGY	1 cut(s)	75
PaeI	GCATGC	1 cut(s)	75
PdmI	GAANNNNTTC	2 cut(s)	333, 796
PfeI	GAWTC	1 cut(s)	205
PinAI	ACCGGT	1 cut(s)	195
PkrI	GCNGC	4 cut(s)	134, 322, 447, 667
Psp6I	CCWGG	3 cut(s)	247, 637, 838
PspGI	CCWGG	3 cut(s)	247, 637, 838
PspN4I	GGNNCC	3 cut(s)	470, 682, 869
PstNI	CAGNNNCTG	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	867
PvuII	CAGCTG	1 cut(s)	668
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
SaqAI	TTAA	3 cut(s)	53, 279, 387
SatI	GCNGC	4 cut(s)	133, 321, 446, 666
Sau3AI	GATC	2 cut(s)	609, 867
ScrFI	CCNGG	5 cut(s)	139, 249, 639, 732, 840
SduI	GDGCHC	1 cut(s)	776
SfaNI	GCATC	3 cut(s)	367, 481, 813
SmlI	CTYRAG	1 cut(s)	766
SmoI	CTYRAG	1 cut(s)	766
SphI	GCATGC	1 cut(s)	75
Sse9I	AATT	6 cut(s)	26, 114, 450, 498, 713, 760
StyD4I	CCNGG	5 cut(s)	137, 247, 637, 730, 838
StyI	CCWWGG	2 cut(s)	351, 863
TaaI	ACNGT	4 cut(s)	15, 45, 333, 481
TaiI	ACGT	1 cut(s)	619
TaqI	TCGA	2 cut(s)	534, 720
TasI	AATT	6 cut(s)	26, 114, 450, 498, 713, 760
TatI	WGTACW	1 cut(s)	549
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	3 cut(s)	53, 279, 387
Tru9I	TTAA	3 cut(s)	53, 279, 387
TseFI	GTSAC	2 cut(s)	191, 251
TseI	GCWGC	4 cut(s)	132, 320, 445, 665
Tsp45I	GTSAC	2 cut(s)	191, 251
TspDTI	ATGAA	1 cut(s)	473
TspGWI	ACGGA	1 cut(s)	461
VneI	GTGCAC	1 cut(s)	772
XapI	RAATTY	2 cut(s)	114, 760
XceI	RCATGY	1 cut(s)	75
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XmnI	GAANNNNTTC	2 cut(s)	333, 796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.