Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0013757

Physical Location & Seq

Genomic Coordinates Reverse (-)

59208536 .. 59209120

Gene Structure 585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG396200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGATGAAACTGCAGAGAAATGTTTCTTTCGTAGATTGCCTGAACCACGATACGCTGATGGCACCTATGCGCAATGGTGTCTCCATTATGGATGGAGCATTGCTTCTCGTAGCAGCTAATGAAGAACTTCCCCCAGCACAAACCAAAGAGCATTTGGCTACTCTTGCAATTATGCGTCTTAAAGACATTATTTTCCTCCAAAAGAAAGTAGATCTTGAAGTTCAAGACGAGGATCGGGCCATTGAGCAACAAAAAAAATGGAGGAGGAGTTCTATGAATCAGCCAACTGCTCAACTTGAGCACAACCTGGATGTAGTTGATGAGCACATCGTCAAAAATATCCCAGTACCACAAAGGGACTTGGCCTCACCTCATTATATTACAAATATTCATTCTTTTGACGTCAACAAATCTGGGTATGAGATTGATCGCTTGAGAGGCGGTGTGGTGGGTGGAACCAGGGTCAGGGGTGTTGTGAAACTGAACCACTTGATTGAGGTTTGCCCGGGGAAGGTTGAAAAGGACGAGAACGACAACTTCAAATGCACGCCATTATATTCTAGACTGGTTTCCTTGTTTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

194

Amino Acids

22.04

Weight (kDa)

6.65

Isoelectric Point (pI)

46.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	5 - 92	7.8e-09	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013757)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138081 RchiOBHm_Chr2g0138091 RchiOBHm_Chr6g0259921
rosa_laevigata	RLG00000019718 RLG00000019719 RLG00000019723 RLG00000019724
rosa_multiflora	Rmu_sc0004576.1_g000021 Rmu_sc0009049.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106500 Rroxscaffold_2G00106530
rosa_rugosa	Rorug02G0349500 Rorug05G0591400
rosa_samantha	Rh2AG396200 Rh2CG382700 Rh6BG103700 Rh6CG097000 Rh6DG090700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	405
Acc16I	TGCGCA	1 cut(s)	71
AccB1I	GGYRCC	1 cut(s)	61
AciI	CCGC	1 cut(s)	441
AclWI	GGATC	1 cut(s)	240
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	1 cut(s)	348
AfiI	CCNNNNNNNGG	2 cut(s)	465, 511
AgsI	TTSAA	4 cut(s)	218, 224, 518, 541
AjnI	CCWGG	2 cut(s)	306, 458
AloI	GAACNNNNNNTCC	2 cut(s)	253, 285
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
Alw21I	GWGCWC	2 cut(s)	303, 327
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	240
Ama87I	CYCGRG	1 cut(s)	505
AoxI	GGCC	2 cut(s)	237, 363
ApeKI	GCWGC	1 cut(s)	113
Asp700I	GAANNNNTTC	2 cut(s)	22, 126
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	237
AsuC2I	CCSGG	2 cut(s)	506, 507
AsuHPI	GGTGA	1 cut(s)	360
AvaI	CYCGRG	1 cut(s)	505
BanI	GGYRCC	1 cut(s)	61
Bbv12I	GWGCWC	2 cut(s)	303, 327
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	2 cut(s)	52, 86
BciT130I	CCWGG	2 cut(s)	308, 460
BcnI	CCSGG	2 cut(s)	506, 507
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	561
BfmI	CTRYAG	1 cut(s)	11
BglII	AGATCT	1 cut(s)	211
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	4 cut(s)	308, 460, 506, 507
BmeT110I	CYCGRG	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	237
BmiI	GGNNCC	2 cut(s)	63, 457
BmrFI	CCNGG	4 cut(s)	308, 460, 506, 507
BmrI	ACTGGG	1 cut(s)	338
BmuI	ACTGGG	1 cut(s)	338
BpuEI	CTTGAG	2 cut(s)	317, 454
BpuMI	CCSGG	2 cut(s)	506, 507
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	3 cut(s)	459, 505, 506
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	2 cut(s)	465, 511
Bse1I	ACTGG	2 cut(s)	344, 570
Bse3DI	GCAATG	2 cut(s)	79, 98
BseBI	CCWGG	2 cut(s)	308, 460
BseDI	CCNNGG	3 cut(s)	459, 505, 506
BseGI	GGATG	2 cut(s)	97, 316
BseLI	CCNNNNNNNGG	2 cut(s)	465, 511
BseMI	GCAATG	2 cut(s)	79, 98
BseNI	ACTGG	2 cut(s)	344, 570
BseRI	GAGGAG	2 cut(s)	277, 280
BseXI	GCAGC	1 cut(s)	125
BseYI	CCCAGC	1 cut(s)	133
BshFI	GGCC	2 cut(s)	239, 365
BshNI	GGYRCC	1 cut(s)	61
BsiHKAI	GWGCWC	2 cut(s)	303, 327
BsiHKCI	CYCGRG	1 cut(s)	505
BsiSI	CCGG	1 cut(s)	506
BslFI	GGGAC	1 cut(s)	371
BslI	CCNNNNNNNGG	2 cut(s)	465, 511
BsmAI	GTCTC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	371
BsnI	GGCC	2 cut(s)	239, 365
BsoBI	CYCGRG	1 cut(s)	505
Bsp1286I	GDGCHC	2 cut(s)	303, 327
Bsp143I	GATC	3 cut(s)	211, 232, 427
BspACI	CCGC	1 cut(s)	441
BspANI	GGCC	2 cut(s)	239, 365
BspLI	GGNNCC	2 cut(s)	63, 457
BspMAI	CTGCAG	1 cut(s)	15
BspPI	GGATC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	61
BsrDI	GCAATG	2 cut(s)	79, 98
BsrI	ACTGG	2 cut(s)	344, 570
BssECI	CCNNGG	3 cut(s)	459, 505, 506
BssMI	GATC	3 cut(s)	211, 232, 427
BssNI	GRCGYC	1 cut(s)	402
Bst2UI	CCWGG	2 cut(s)	308, 460
BstACI	GRCGYC	1 cut(s)	402
BstC8I	GCNNGC	1 cut(s)	548
BstF5I	GGATG	2 cut(s)	97, 316
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	3 cut(s)	214, 235, 430
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	3 cut(s)	211, 232, 427
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 438
BstNI	CCWGG	2 cut(s)	308, 460
BstSCI	CCNGG	4 cut(s)	306, 458, 504, 505
BstSFI	CTRYAG	1 cut(s)	11
BstV1I	GCAGC	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	239, 365
BtsCI	GGATG	2 cut(s)	97, 316
Cac8I	GCNNGC	1 cut(s)	548
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	237
Cfr9I	CCCGGG	1 cut(s)	505
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	347
CviJI	RGCY	5 cut(s)	116, 158, 239, 283, 365
CviKI_1	RGCY	5 cut(s)	116, 158, 239, 283, 365
CviQI	GTAC	1 cut(s)	347
DpnI	GATC	3 cut(s)	213, 234, 429
DpnII	GATC	3 cut(s)	211, 232, 427
Eco88I	CYCGRG	1 cut(s)	505
EcoRII	CCWGG	2 cut(s)	306, 458
FaiI	YATR	7 cut(s)	68, 89, 173, 275, 378, 420, 556
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FaqI	GGGAC	1 cut(s)	371
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	2 cut(s)	104, 323
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	561
FspI	TGCGCA	1 cut(s)	71
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	1 cut(s)	114
GsaI	CCCAGC	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	239, 365
HapII	CCGG	1 cut(s)	506
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	72
Hin1I	GRCGYC	1 cut(s)	402
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	1 cut(s)	277
HpaII	CCGG	1 cut(s)	506
HphI	GGTGA	1 cut(s)	360
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188III	TCNNGA	3 cut(s)	215, 224, 561
Hpy8I	GTNNAC	1 cut(s)	406
HpyAV	CCTTC	1 cut(s)	505
HpyCH4IV	ACGT	1 cut(s)	402
HpyCH4V	TGCA	3 cut(s)	13, 167, 546
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 438
HpySE526I	ACGT	1 cut(s)	402
Hsp92I	GRCGYC	1 cut(s)	402
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	3 cut(s)	211, 232, 427
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	1 cut(s)	125
MaeI	CTAG	1 cut(s)	561
MaeII	ACGT	1 cut(s)	402
MalI	GATC	3 cut(s)	213, 234, 429
MboI	GATC	3 cut(s)	211, 232, 427
MboII	GAAGA	1 cut(s)	134
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	2 cut(s)	303, 327
MluCI	AATT	1 cut(s)	168
MnlI	CCTC	8 cut(s)	206, 223, 255, 258, 376, 381, 431, 490
MroXI	GAANNNNTTC	2 cut(s)	22, 126
MseI	TTAA	1 cut(s)	180
MspI	CCGG	1 cut(s)	506
MspR9I	CCNGG	4 cut(s)	308, 460, 506, 507
MvaI	CCWGG	2 cut(s)	308, 460
MwoI	GCNNNNNNNGC	2 cut(s)	164, 438
NciI	CCSGG	2 cut(s)	506, 507
NdeII	GATC	3 cut(s)	211, 232, 427
NlaIV	GGNNCC	2 cut(s)	63, 457
NsbI	TGCGCA	1 cut(s)	71
PdmI	GAANNNNTTC	2 cut(s)	22, 126
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	1 cut(s)	115
Psp6I	CCWGG	2 cut(s)	306, 458
PspFI	CCCAGC	1 cut(s)	133
PspGI	CCWGG	2 cut(s)	306, 458
PspN4I	GGNNCC	2 cut(s)	63, 457
PspPI	GGNCC	1 cut(s)	237
PstI	CTGCAG	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	211
RsaI	GTAC	1 cut(s)	348
RsaNI	GTAC	1 cut(s)	347
SaqAI	TTAA	1 cut(s)	180
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	3 cut(s)	211, 232, 427
Sau96I	GGNCC	1 cut(s)	237
ScrFI	CCNGG	4 cut(s)	308, 460, 506, 507
SduI	GDGCHC	2 cut(s)	303, 327
SetI	ASST	7 cut(s)	67, 118, 309, 373, 405, 501, 516
SfcI	CTRYAG	1 cut(s)	11
SmaI	CCCGGG	1 cut(s)	507
SmlI	CTYRAG	2 cut(s)	296, 433
SmoI	CTYRAG	2 cut(s)	296, 433
Sse9I	AATT	1 cut(s)	168
SsiI	CCGC	1 cut(s)	441
SspI	AATATT	1 cut(s)	388
SspMI	CTAG	1 cut(s)	561
StyD4I	CCNGG	4 cut(s)	306, 458, 504, 505
TaiI	ACGT	1 cut(s)	405
TasI	AATT	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	1 cut(s)	180
Tru9I	TTAA	1 cut(s)	180
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	4 cut(s)	20, 135, 290, 380
TspMI	CCCGGG	1 cut(s)	505
XbaI	TCTAGA	1 cut(s)	560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XmaI	CCCGGG	1 cut(s)	505
XmnI	GAANNNNTTC	2 cut(s)	22, 126
XspI	CTAG	1 cut(s)	561
ZraI	GACGTC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.