Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0013757

Physical Location & Seq

Genomic Coordinates Reverse (-)

10710059 .. 10711082

Gene Structure 1024 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG097000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGTCGAAGATGAAGAAGAAGAATAATAAGGGTTTGATGGCTCAGGATCTGAGCAAACTGGATCTAACTCAGTTAGATCCACTCTCGCTGGAAGTTATATCTTGTCAGGCCACGATCAACATTGGCACAATAGGTCATGTGGCTCATGGATATGCTAATGCCAAAATTTACAAGTGTGGTAGCTGCCCCCGGCCTGACTGCTACAAGTCTTATGGTAGTGGAAAGGAAGACAATCCTATCTGTGACCGGTGTGGAAATCAGATGAGGCTGGAGAGAGATGTGTCCTTTGTAGATTGCCCTGGTCACGAAGCACTAATGGCTACTATGCTTAATGGTGTGTCCATTATGGATGGAGCGTTACCTGTTGTAGCTGCTGACGAACAGTTTCCCCAAGAACAAACCAAGGAGCATCTGGAAGCTGTTGAAATCTTGTCTCTTAAACACAACATTGTGCTTCAACACAAAGTTGACCTTGTCCGAGAGAAGGCAATAGAGCAGCGAATTGAGATGAAGGAATGGTTTCGTGGCACGGTAGCTGAAGATGCAACAATTGTGCCTATTGTTGCTCAACTGAAGTATAATATCGATGTAGTGAACGAGTACATTGTCAAGAAAAAACCCATTCCGGAAAGGGACTTTGCTTCGCCTCCTTATATGAGGATCATACGTTCGTTTGATGTCAACAAACCTGGGTTTGGGATTGATGACATAGAAGGTGCTGTGGCTGGTGGAACCCTTCTTAGCGGTGTTTTGAAACTGAACCAATTGGTCGAGGTTCGTCCCGGTCTTGTTGTCAAAGACGAGAGAGGAAATTTCTTGAGGTGCACGCCATTGTATTCTAGAATAGTTTCCCTTTTTGCTGAGGAAAATGAGTTGCAGTTTGCTGTGCCAGGAGGTCTGGGGTTGGCACAACCTTGGATCCTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

309

Amino Acids

34.28

Weight (kDa)

5.93

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP_EFTU	PF00009	92 - 204	1.3e-14	Elongation factor Tu GTP binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013757)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138081 RchiOBHm_Chr2g0138091 RchiOBHm_Chr6g0259921
rosa_laevigata	RLG00000019718 RLG00000019719 RLG00000019723 RLG00000019724
rosa_multiflora	Rmu_sc0004576.1_g000021 Rmu_sc0009049.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106500 Rroxscaffold_2G00106530
rosa_rugosa	Rorug02G0349500 Rorug05G0591400
rosa_samantha	Rh2AG396200 Rh2CG382700 Rh6BG103700 Rh6CG097000 Rh6DG090700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	625
AciI	CCGC	1 cut(s)	744
AclWI	GGATC	6 cut(s)	54, 69, 71, 668, 913, 926
AcsI	RAATTY	2 cut(s)	165, 811
AcuI	CTGAAG	2 cut(s)	558, 593
AfaI	GTAC	1 cut(s)	602
AfiI	CCNNNNNNNGG	2 cut(s)	484, 695
AgeI	ACCGGT	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	425, 458, 754
AjnI	CCWGG	3 cut(s)	298, 688, 889
AloI	GAACNNNNNNTCC	2 cut(s)	652, 684
AluBI	AGCT	4 cut(s)	183, 371, 419, 536
AluI	AGCT	4 cut(s)	183, 371, 419, 536
Alw21I	GWGCWC	1 cut(s)	827
Alw26I	GTCTC	1 cut(s)	438
Alw44I	GTGCAC	1 cut(s)	823
AlwI	GGATC	6 cut(s)	54, 69, 71, 668, 913, 926
AlwNI	CAGNNNCTG	1 cut(s)	49
Aor13HI	TCCGGA	1 cut(s)	625
AoxI	GGCC	2 cut(s)	108, 191
ApaLI	GTGCAC	1 cut(s)	823
ApeKI	GCWGC	3 cut(s)	183, 371, 496
ApoI	RAATTY	2 cut(s)	165, 811
AsiGI	ACCGGT	1 cut(s)	246
Asp700I	GAANNNNTTC	3 cut(s)	384, 519, 847
AsuC2I	CCSGG	2 cut(s)	190, 783
BaeGI	GKGCMC	1 cut(s)	827
BamHI	GGATCC	1 cut(s)	918
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	827
BbvCI	CCTCAGC	1 cut(s)	861
BbvI	GCAGC	3 cut(s)	170, 358, 508
BccI	CCATC	2 cut(s)	31, 344
BciT130I	CCWGG	3 cut(s)	300, 690, 891
BcnI	CCSGG	2 cut(s)	190, 783
BcoDI	GTCTC	1 cut(s)	438
BfaI	CTAG	1 cut(s)	840
BisI	GCNGC	3 cut(s)	184, 372, 497
BlsI	GCNGC	3 cut(s)	185, 373, 498
Bme1390I	CCNGG	5 cut(s)	190, 300, 690, 783, 891
BmiI	GGNNCC	2 cut(s)	733, 920
BmrFI	CCNGG	5 cut(s)	190, 300, 690, 783, 891
BmsI	GCATC	2 cut(s)	418, 532
BpiI	GAAGAC	1 cut(s)	234
BpmI	CTGGAG	1 cut(s)	290
Bpu10I	CCTNAGC	2 cut(s)	42, 861
BpuEI	CTTGAG	1 cut(s)	838
BpuMI	CCSGG	2 cut(s)	190, 783
Bsa29I	ATCGAT	1 cut(s)	585
BsaJI	CCNNGG	5 cut(s)	188, 298, 402, 689, 914
BsaWI	WCCGGW	2 cut(s)	246, 625
Bsc4I	CCNNNNNNNGG	2 cut(s)	484, 695
Bse118I	RCCGGY	1 cut(s)	246
Bse1I	ACTGG	1 cut(s)	63
BseAI	TCCGGA	1 cut(s)	625
BseBI	CCWGG	3 cut(s)	300, 690, 891
BseCI	ATCGAT	1 cut(s)	585
BseDI	CCNNGG	5 cut(s)	188, 298, 402, 689, 914
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	2 cut(s)	484, 695
BseMII	CTCAG	4 cut(s)	41, 56, 83, 852
BseNI	ACTGG	1 cut(s)	63
BseSI	GKGCMC	1 cut(s)	827
BseXI	GCAGC	3 cut(s)	170, 358, 508
BshFI	GGCC	2 cut(s)	110, 193
BshTI	ACCGGT	1 cut(s)	246
BshVI	ATCGAT	1 cut(s)	585
BsiHKAI	GWGCWC	1 cut(s)	827
BsiSI	CCGG	4 cut(s)	190, 247, 626, 783
BslFI	GGGAC	2 cut(s)	647, 765
BslI	CCNNNNNNNGG	2 cut(s)	484, 695
BsmAI	GTCTC	1 cut(s)	438
BsmFI	GGGAC	2 cut(s)	647, 765
BsnI	GGCC	2 cut(s)	110, 193
Bsp1286I	GDGCHC	1 cut(s)	827
Bsp13I	TCCGGA	1 cut(s)	625
Bsp143I	GATC	6 cut(s)	46, 61, 76, 114, 660, 918
BspACI	CCGC	1 cut(s)	744
BspANI	GGCC	2 cut(s)	110, 193
BspCNI	CTCAG	4 cut(s)	42, 55, 82, 853
BspDI	ATCGAT	1 cut(s)	585
BspEI	TCCGGA	1 cut(s)	625
BspLI	GGNNCC	2 cut(s)	733, 920
BspPI	GGATC	6 cut(s)	54, 69, 71, 668, 913, 926
BsrFI	RCCGGY	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	63
BssAI	RCCGGY	1 cut(s)	246
BssECI	CCNNGG	5 cut(s)	188, 298, 402, 689, 914
BssMI	GATC	6 cut(s)	46, 61, 76, 114, 660, 918
BssT1I	CCWWGG	2 cut(s)	402, 914
Bst2UI	CCWGG	3 cut(s)	300, 690, 891
Bst4CI	ACNGT	2 cut(s)	384, 532
BstC8I	GCNNGC	1 cut(s)	827
BstDEI	CTNAG	5 cut(s)	42, 50, 69, 740, 861
BstF5I	GGATG	1 cut(s)	355
BstKTI	GATC	6 cut(s)	49, 64, 79, 117, 663, 921
BstMAI	GTCTC	1 cut(s)	438
BstMBI	GATC	6 cut(s)	46, 61, 76, 114, 660, 918
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 542
BstNI	CCWGG	3 cut(s)	300, 690, 891
BstSCI	CCNGG	5 cut(s)	188, 298, 688, 781, 889
BstSLI	GKGCMC	1 cut(s)	827
BstV1I	GCAGC	3 cut(s)	170, 358, 508
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	4 cut(s)	46, 61, 76, 918
BstYI	RGATCY	4 cut(s)	46, 61, 76, 918
Bsu15I	ATCGAT	1 cut(s)	585
BsuRI	GGCC	2 cut(s)	110, 193
BsuTUI	ATCGAT	1 cut(s)	585
BtsCI	GGATG	1 cut(s)	355
Cac8I	GCNNGC	1 cut(s)	827
CaiI	CAGNNNCTG	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	246
ClaI	ATCGAT	1 cut(s)	585
Csp6I	GTAC	1 cut(s)	601
CspAI	ACCGGT	1 cut(s)	246
CviAII	CATG	2 cut(s)	137, 146
CviQI	GTAC	1 cut(s)	601
DdeI	CTNAG	5 cut(s)	42, 50, 69, 740, 861
DpnI	GATC	6 cut(s)	48, 63, 78, 116, 662, 920
DpnII	GATC	6 cut(s)	46, 61, 76, 114, 660, 918
Eco130I	CCWWGG	2 cut(s)	402, 914
Eco57I	CTGAAG	2 cut(s)	558, 593
EcoRII	CCWGG	3 cut(s)	298, 688, 889
EcoT14I	CCWWGG	2 cut(s)	402, 914
ErhI	CCWWGG	2 cut(s)	402, 914
FaeI	CATG	2 cut(s)	140, 149
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FaqI	GGGAC	2 cut(s)	647, 765
FatI	CATG	2 cut(s)	136, 145
Fnu4HI	GCNGC	3 cut(s)	184, 372, 497
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	3 cut(s)	184, 372, 497
FspBI	CTAG	1 cut(s)	840
GluI	GCNGC	3 cut(s)	184, 372, 497
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	110, 193
HapII	CCGG	4 cut(s)	190, 247, 626, 783
Hin1II	CATG	2 cut(s)	140, 149
HincII	GTYRAC	2 cut(s)	469, 682
HindII	GTYRAC	2 cut(s)	469, 682
HpaII	CCGG	4 cut(s)	190, 247, 626, 783
Hpy166II	GTNNAC	4 cut(s)	469, 595, 682, 825
Hpy188I	TCNGA	3 cut(s)	51, 261, 479
Hpy188III	TCNNGA	7 cut(s)	44, 305, 413, 610, 626, 817, 840
Hpy8I	GTNNAC	4 cut(s)	469, 595, 682, 825
HpyAV	CCTTC	4 cut(s)	478, 505, 707, 746
HpyCH4III	ACNGT	2 cut(s)	384, 532
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	3 cut(s)	545, 825, 877
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 542
HpyF3I	CTNAG	5 cut(s)	42, 50, 69, 740, 861
HpySE526I	ACGT	1 cut(s)	667
Hsp92II	CATG	2 cut(s)	140, 149
Kpn2I	TCCGGA	1 cut(s)	625
Kzo9I	GATC	6 cut(s)	46, 61, 76, 114, 660, 918
LmnI	GCTCC	2 cut(s)	353, 406
Lsp1109I	GCAGC	3 cut(s)	170, 358, 508
LweI	GCATC	2 cut(s)	418, 532
MaeI	CTAG	1 cut(s)	840
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	3 cut(s)	242, 302, 357
MalI	GATC	6 cut(s)	48, 63, 78, 116, 662, 920
MboI	GATC	6 cut(s)	46, 61, 76, 114, 660, 918
MboII	GAAGA	6 cut(s)	19, 25, 28, 31, 239, 551
MfeI	CAATTG	2 cut(s)	549, 764
MflI	RGATCY	4 cut(s)	46, 61, 76, 918
MhlI	GDGCHC	1 cut(s)	827
MluCI	AATT	5 cut(s)	165, 501, 549, 764, 811
MnlI	CCTC	8 cut(s)	258, 651, 657, 766, 800, 813, 856, 887
MroI	TCCGGA	1 cut(s)	625
MroXI	GAANNNNTTC	3 cut(s)	384, 519, 847
MseI	TTAA	2 cut(s)	330, 438
MslI	CAYNNNNRTG	1 cut(s)	150
MspI	CCGG	4 cut(s)	190, 247, 626, 783
MspR9I	CCNGG	5 cut(s)	190, 300, 690, 783, 891
MunI	CAATTG	2 cut(s)	549, 764
MvaI	CCWGG	3 cut(s)	300, 690, 891
MwoI	GCNNNNNNNGC	2 cut(s)	317, 542
NciI	CCSGG	2 cut(s)	190, 783
NdeII	GATC	6 cut(s)	46, 61, 76, 114, 660, 918
NlaIII	CATG	2 cut(s)	140, 149
NlaIV	GGNNCC	2 cut(s)	733, 920
NmuCI	GTSAC	2 cut(s)	242, 302
PdmI	GAANNNNTTC	3 cut(s)	384, 519, 847
PflFI	GACNNNGTC	1 cut(s)	473
PinAI	ACCGGT	1 cut(s)	246
PkrI	GCNGC	3 cut(s)	185, 373, 498
Psp6I	CCWGG	3 cut(s)	298, 688, 889
PspGI	CCWGG	3 cut(s)	298, 688, 889
PspN4I	GGNNCC	2 cut(s)	733, 920
PstNI	CAGNNNCTG	1 cut(s)	49
PsuI	RGATCY	4 cut(s)	46, 61, 76, 918
PsyI	GACNNNGTC	1 cut(s)	473
RsaI	GTAC	1 cut(s)	602
RsaNI	GTAC	1 cut(s)	601
RseI	CAYNNNNRTG	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	330, 438
SatI	GCNGC	3 cut(s)	184, 372, 497
Sau3AI	GATC	6 cut(s)	46, 61, 76, 114, 660, 918
ScrFI	CCNGG	5 cut(s)	190, 300, 690, 783, 891
SduI	GDGCHC	1 cut(s)	827
SfaNI	GCATC	2 cut(s)	418, 532
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	817
SmoI	CTYRAG	1 cut(s)	817
Sse9I	AATT	5 cut(s)	165, 501, 549, 764, 811
SsiI	CCGC	1 cut(s)	744
SspMI	CTAG	1 cut(s)	840
StyD4I	CCNGG	5 cut(s)	188, 298, 688, 781, 889
StyI	CCWWGG	2 cut(s)	402, 914
TaaI	ACNGT	2 cut(s)	384, 532
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	3 cut(s)	5, 585, 771
TasI	AATT	5 cut(s)	165, 501, 549, 764, 811
TatI	WGTACW	1 cut(s)	600
Tru1I	TTAA	2 cut(s)	330, 438
Tru9I	TTAA	2 cut(s)	330, 438
TseFI	GTSAC	2 cut(s)	242, 302
TseI	GCWGC	3 cut(s)	183, 371, 496
Tsp45I	GTSAC	2 cut(s)	242, 302
TspDTI	ATGAA	2 cut(s)	26, 524
Tth111I	GACNNNGTC	1 cut(s)	473
VneI	GTGCAC	1 cut(s)	823
XapI	RAATTY	2 cut(s)	165, 811
XbaI	TCTAGA	1 cut(s)	839
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XmnI	GAANNNNTTC	3 cut(s)	384, 519, 847
XspI	CTAG	1 cut(s)	840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.