Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013757

Physical Location & Seq

Genomic Coordinates Reverse (-)

15106885 .. 15107334

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23307

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGACAAGTGTTGTGACATTGTCAAGAAAATTGGGCCAATTGTTTACAAGTGTTTACCGAAGCAAAGTCCCTTTCCGGAATGAGGATTTTCTTCTTCGAACTTGCGGTGACAAGTGTTGTGACATTGTCAAGAAAATCCCCATTCCGGAAAGGGACATTGCTTCGCCTCCTTATATGAGGATCATACGTTCGTTTGATGTCAACAAATCTGGGTTTGGGATTGATGACATAGAAGGTGCTGTGGCTGGTGGAACCCTTCTTAGGGGTGTTTTGAAACTTAACCAATTGGTCGAGGTTCGTCCCGGTCTTGTTGTCAAAGACGAGAGAGGAAATTTCTTGAGGTGCACGCCATTGTATTCTAGAATAGTTTCCTTTTTTGCTGAGGAAAATGAGTTGCAGTTTGCTGTGCCAGGAGGTCTGGGGTCGGCACAACCTTGGATCCTGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

149

Amino Acids

16.59

Weight (kDa)

9.0

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013757)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138081 RchiOBHm_Chr2g0138091 RchiOBHm_Chr6g0259921
rosa_laevigata	RLG00000019718 RLG00000019719 RLG00000019723 RLG00000019724
rosa_multiflora	Rmu_sc0004576.1_g000021 Rmu_sc0009049.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106500 Rroxscaffold_2G00106530
rosa_rugosa	Rorug02G0349500 Rorug05G0591400
rosa_samantha	Rh2AG396200 Rh2CG382700 Rh6BG103700 Rh6CG097000 Rh6DG090700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	75, 145
AciI	CCGC	1 cut(s)	105
AclWI	GGATC	3 cut(s)	188, 433, 446
AcsI	RAATTY	1 cut(s)	331
AfiI	CCNNNNNNNGG	4 cut(s)	82, 145, 261, 262
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	409
AloI	GAACNNNNNNTCC	2 cut(s)	172, 204
Alw21I	GWGCWC	1 cut(s)	347
Alw44I	GTGCAC	1 cut(s)	343
AlwI	GGATC	3 cut(s)	188, 433, 446
Aor13HI	TCCGGA	2 cut(s)	75, 145
AoxI	GGCC	1 cut(s)	34
ApaLI	GTGCAC	1 cut(s)	343
ApoI	RAATTY	1 cut(s)	331
Asp700I	GAANNNNTTC	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	34
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	1 cut(s)	119
AsuII	TTCGAA	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	347
BamHI	GGATCC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	347
BbvCI	CCTCAGC	1 cut(s)	381
BciT130I	CCWGG	1 cut(s)	411
BcnI	CCSGG	1 cut(s)	303
BfaI	CTAG	1 cut(s)	360
Bme1390I	CCNGG	2 cut(s)	303, 411
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	2 cut(s)	253, 440
BmrFI	CCNGG	2 cut(s)	303, 411
Bpu10I	CCTNAGC	1 cut(s)	381
Bpu14I	TTCGAA	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	358
BpuMI	CCSGG	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	434
BsaWI	WCCGGW	2 cut(s)	75, 145
Bsc4I	CCNNNNNNNGG	4 cut(s)	82, 145, 261, 262
Bse3DI	GCAATG	1 cut(s)	156
BseAI	TCCGGA	2 cut(s)	75, 145
BseBI	CCWGG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	434
BseLI	CCNNNNNNNGG	4 cut(s)	82, 145, 261, 262
BseMI	GCAATG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	372
BseSI	GKGCMC	1 cut(s)	347
BshFI	GGCC	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	347
BsiSI	CCGG	3 cut(s)	76, 146, 303
BslFI	GGGAC	3 cut(s)	53, 167, 285
BslI	CCNNNNNNNGG	4 cut(s)	82, 145, 261, 262
BsmFI	GGGAC	3 cut(s)	53, 167, 285
BsnI	GGCC	1 cut(s)	36
Bsp119I	TTCGAA	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	347
Bsp13I	TCCGGA	2 cut(s)	75, 145
Bsp143I	GATC	2 cut(s)	180, 438
BspACI	CCGC	1 cut(s)	105
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	1 cut(s)	373
BspEI	TCCGGA	2 cut(s)	75, 145
BspLI	GGNNCC	2 cut(s)	253, 440
BspPI	GGATC	3 cut(s)	188, 433, 446
BspT104I	TTCGAA	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	156
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	2 cut(s)	180, 438
BssT1I	CCWWGG	1 cut(s)	434
Bst2UI	CCWGG	1 cut(s)	411
BstBI	TTCGAA	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	347
BstDEI	CTNAG	2 cut(s)	260, 381
BstKTI	GATC	2 cut(s)	183, 441
BstMBI	GATC	2 cut(s)	180, 438
BstNI	CCWGG	1 cut(s)	411
BstSCI	CCNGG	2 cut(s)	301, 409
BstSLI	GKGCMC	1 cut(s)	347
BstX2I	RGATCY	1 cut(s)	438
BstYI	RGATCY	1 cut(s)	438
BsuRI	GGCC	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	34
CviJI	RGCY	2 cut(s)	36, 245
CviKI_1	RGCY	2 cut(s)	36, 245
DdeI	CTNAG	2 cut(s)	260, 381
DpnI	GATC	2 cut(s)	182, 440
DpnII	GATC	2 cut(s)	180, 438
Eco130I	CCWWGG	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	434
FaiI	YATR	4 cut(s)	174, 176, 185, 230
FaqI	GGGAC	3 cut(s)	53, 167, 285
FspBI	CTAG	1 cut(s)	360
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	3 cut(s)	76, 146, 303
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HpaII	CCGG	3 cut(s)	76, 146, 303
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	4 cut(s)	45, 55, 202, 345
Hpy188III	TCNNGA	6 cut(s)	24, 76, 130, 146, 337, 360
Hpy8I	GTNNAC	4 cut(s)	45, 55, 202, 345
HpyAV	CCTTC	2 cut(s)	227, 266
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	345, 397
HpyF3I	CTNAG	2 cut(s)	260, 381
HpySE526I	ACGT	1 cut(s)	187
Kpn2I	TCCGGA	2 cut(s)	75, 145
Kzo9I	GATC	2 cut(s)	180, 438
LpnPI	CCDG	8 cut(s)	89, 159, 195, 231, 316, 396, 404, 423
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	3 cut(s)	13, 107, 119
MalI	GATC	2 cut(s)	182, 440
MboI	GATC	2 cut(s)	180, 438
MboII	GAAGA	2 cut(s)	83, 86
MfeI	CAATTG	2 cut(s)	38, 284
MflI	RGATCY	1 cut(s)	438
MhlI	GDGCHC	1 cut(s)	347
MluCI	AATT	4 cut(s)	29, 38, 284, 331
MnlI	CCTC	8 cut(s)	76, 171, 177, 286, 320, 333, 376, 407
MroI	TCCGGA	2 cut(s)	75, 145
MroXI	GAANNNNTTC	1 cut(s)	367
MseI	TTAA	1 cut(s)	279
MspI	CCGG	3 cut(s)	76, 146, 303
MspR9I	CCNGG	2 cut(s)	303, 411
MunI	CAATTG	2 cut(s)	38, 284
MvaI	CCWGG	1 cut(s)	411
NciI	CCSGG	1 cut(s)	303
NdeII	GATC	2 cut(s)	180, 438
NlaIV	GGNNCC	2 cut(s)	253, 440
NmuCI	GTSAC	3 cut(s)	13, 107, 119
NspV	TTCGAA	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	367
PflFI	GACNNNGTC	2 cut(s)	19, 125
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	2 cut(s)	253, 440
PspPI	GGNCC	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	438
PsyI	GACNNNGTC	2 cut(s)	19, 125
SaqAI	TTAA	1 cut(s)	279
Sau3AI	GATC	2 cut(s)	180, 438
Sau96I	GGNCC	1 cut(s)	34
ScrFI	CCNGG	2 cut(s)	303, 411
SduI	GDGCHC	1 cut(s)	347
SetI	ASST	6 cut(s)	190, 238, 297, 344, 418, 436
SfuI	TTCGAA	1 cut(s)	97
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	4 cut(s)	29, 38, 284, 331
SsiI	CCGC	1 cut(s)	105
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	2 cut(s)	301, 409
StyI	CCWWGG	1 cut(s)	434
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	2 cut(s)	97, 291
TasI	AATT	4 cut(s)	29, 38, 284, 331
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseFI	GTSAC	3 cut(s)	13, 107, 119
Tsp45I	GTSAC	3 cut(s)	13, 107, 119
Tth111I	GACNNNGTC	2 cut(s)	19, 125
VneI	GTGCAC	1 cut(s)	343
XapI	RAATTY	1 cut(s)	331
XbaI	TCTAGA	1 cut(s)	359
XmnI	GAANNNNTTC	1 cut(s)	367
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.