Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013757

Physical Location & Seq

Genomic Coordinates Reverse (-)

55952315 .. 55953568

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019719

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGGAAGTTGGCTGCTGTTGTTCCTACTGCAGAAGTTTCGTGAGATTGATGACACAAAAATTCCTAGGAATGAGGAAAACCTGACAACACTGGATGTAACAGAGTTGCATTCACTCTGCCCTGAAGTAATATCTTGTCAGGCAACTAGCAACATTGGCTCTATAGGTCATTTGGCTCATGATTGCCTGGCCCACGATGCGCTGATGGCAGCTATGCGCAATGGTGTCTCCATTATGGATGAAGCATTGCTTCTCGTAGCAGCTAATGAAGAACTTCCCCCAGCACAAACCAAAGAGCATTTGGCTACTCTTGCAATTATGCGTCTTAAAGACATTATTTTCCACCAAAAGGAAGTAGATGAGGATCGGGCCATTGAGCAACAAAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

131

Amino Acids

14.58

Weight (kDa)

5.0

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013757)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138081 RchiOBHm_Chr2g0138091 RchiOBHm_Chr6g0259921
rosa_laevigata	RLG00000019718 RLG00000019719 RLG00000019723 RLG00000019724
rosa_multiflora	Rmu_sc0004576.1_g000021 Rmu_sc0009049.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106500 Rroxscaffold_2G00106530
rosa_rugosa	Rorug02G0349500 Rorug05G0591400
rosa_samantha	Rh2AG396200 Rh2CG382700 Rh6BG103700 Rh6CG097000 Rh6DG090700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	218
AclWI	GGATC	1 cut(s)	372
AcsI	RAATTY	1 cut(s)	60
AcuI	CTGAAG	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	2 cut(s)	212, 263
AluI	AGCT	2 cut(s)	212, 263
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	372
AoxI	GGCC	2 cut(s)	189, 369
ApeKI	GCWGC	3 cut(s)	13, 209, 260
ApoI	RAATTY	1 cut(s)	60
Asp700I	GAANNNNTTC	1 cut(s)	273
AspA2I	CCTAGG	1 cut(s)	65
AspLEI	GCGC	2 cut(s)	202, 219
AspS9I	GGNCC	2 cut(s)	190, 369
AvrII	CCTAGG	1 cut(s)	65
BbvI	GCAGC	2 cut(s)	221, 272
BccI	CCATC	1 cut(s)	199
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	1 cut(s)	188
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	2 cut(s)	66, 147
BfmI	CTRYAG	2 cut(s)	29, 162
BisI	GCNGC	3 cut(s)	14, 210, 261
BlnI	CCTAGG	1 cut(s)	65
BlsI	GCNGC	3 cut(s)	15, 211, 262
Bme1390I	CCNGG	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	190, 369
BmrFI	CCNGG	1 cut(s)	188
BmsI	GCATC	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse1I	ACTGG	1 cut(s)	96
Bse3DI	GCAATG	2 cut(s)	226, 245
Bse8I	GATNNNNATC	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	2 cut(s)	100, 244
BseJI	GATNNNNATC	1 cut(s)	363
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMI	GCAATG	2 cut(s)	226, 245
BseNI	ACTGG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	221, 272
BseYI	CCCAGC	1 cut(s)	280
BshFI	GGCC	2 cut(s)	191, 371
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	191, 371
Bsp143I	GATC	1 cut(s)	364
BspANI	GGCC	2 cut(s)	191, 371
BspHI	TCATGA	1 cut(s)	178
BspMAI	CTGCAG	1 cut(s)	33
BspPI	GGATC	1 cut(s)	372
BsrDI	GCAATG	2 cut(s)	226, 245
BsrI	ACTGG	1 cut(s)	96
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	1 cut(s)	364
BssT1I	CCWWGG	1 cut(s)	65
Bst2UI	CCWGG	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	100, 244
BstHHI	GCGC	2 cut(s)	202, 219
BstKTI	GATC	1 cut(s)	367
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	1 cut(s)	364
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 197, 206, 311
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstSFI	CTRYAG	2 cut(s)	29, 162
BstV1I	GCAGC	2 cut(s)	221, 272
BsuRI	GGCC	2 cut(s)	191, 371
BtsCI	GGATG	2 cut(s)	100, 244
BtsIMutI	CAGTG	1 cut(s)	89
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	2 cut(s)	202, 219
Cfr13I	GGNCC	2 cut(s)	190, 369
CseI	GACGC	1 cut(s)	311
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	8 cut(s)	13, 159, 176, 191, 212, 263, 305, 371
CviKI_1	RGCY	8 cut(s)	13, 159, 176, 191, 212, 263, 305, 371
DpnI	GATC	1 cut(s)	366
DpnII	GATC	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	186
EcoT14I	CCWWGG	1 cut(s)	65
ErhI	CCWWGG	1 cut(s)	65
FaeI	CATG	1 cut(s)	182
FaiI	YATR	5 cut(s)	164, 180, 215, 236, 320
FalI	AAGNNNNNCTT	2 cut(s)	234, 266
FatI	CATG	1 cut(s)	178
Fnu4HI	GCNGC	3 cut(s)	14, 210, 261
FokI	GGATG	2 cut(s)	107, 251
Fsp4HI	GCNGC	3 cut(s)	14, 210, 261
FspBI	CTAG	2 cut(s)	66, 147
FspI	TGCGCA	1 cut(s)	218
GlaI	GCGC	2 cut(s)	201, 218
GluI	GCNGC	3 cut(s)	14, 210, 261
GsaI	CCCAGC	1 cut(s)	284
HaeIII	GGCC	2 cut(s)	191, 371
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	2 cut(s)	202, 219
Hin1II	CATG	1 cut(s)	182
Hin6I	GCGC	2 cut(s)	200, 217
HinP1I	GCGC	2 cut(s)	200, 217
Hpy188III	TCNNGA	2 cut(s)	41, 179
HpyCH4V	TGCA	3 cut(s)	31, 109, 314
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 197, 206, 311
Hsp92II	CATG	1 cut(s)	182
HspAI	GCGC	2 cut(s)	200, 217
Kzo9I	GATC	1 cut(s)	364
LpnPI	CCDG	7 cut(s)	77, 95, 125, 135, 173, 200, 294
Lsp1109I	GCAGC	2 cut(s)	221, 272
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	2 cut(s)	66, 147
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	1 cut(s)	366
MboI	GATC	1 cut(s)	364
MboII	GAAGA	1 cut(s)	281
MluCI	AATT	2 cut(s)	60, 315
MnlI	CCTC	2 cut(s)	67, 355
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	188
MwoI	GCNNNNNNNGC	4 cut(s)	156, 197, 206, 311
NdeII	GATC	1 cut(s)	364
NlaIII	CATG	1 cut(s)	182
NsbI	TGCGCA	1 cut(s)	218
PagI	TCATGA	1 cut(s)	178
PctI	GAATGC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	273
PkrI	GCNGC	3 cut(s)	15, 211, 262
Psp6I	CCWGG	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	186
PspPI	GGNCC	2 cut(s)	190, 369
PstI	CTGCAG	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	3 cut(s)	14, 210, 261
Sau3AI	GATC	1 cut(s)	364
Sau96I	GGNCC	2 cut(s)	190, 369
ScrFI	CCNGG	1 cut(s)	188
SetI	ASST	4 cut(s)	84, 169, 214, 265
SfaNI	GCATC	1 cut(s)	187
SfcI	CTRYAG	2 cut(s)	29, 162
Sse9I	AATT	2 cut(s)	60, 315
SspMI	CTAG	2 cut(s)	66, 147
StyD4I	CCNGG	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	65
TasI	AATT	2 cut(s)	60, 315
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	96
TseI	GCWGC	3 cut(s)	13, 209, 260
TspDTI	ATGAA	2 cut(s)	255, 282
TspRI	CASTG	1 cut(s)	96
XapI	RAATTY	1 cut(s)	60
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XmaJI	CCTAGG	1 cut(s)	65
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	2 cut(s)	66, 147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.