Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004576.1

Orthogroup ID

OG0013757

Physical Location & Seq

Genomic Coordinates Reverse (-)

62303 .. 62590

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004576.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atggatgtagttgatgagcacatcgtcaaaaatatcccagtaccacaaagggacttggcctcacctccttatattacaattattcattcttttgacgtcaacaaatctgggtatgagattgatcacttgagaggcggtgtggtgggtggaaccggggtcaggggtgttgtgaaactgaaccacttgattgaggtttgcccggggaaggttgaaaaggacgagaacgacaacttcaaatgcacgccattatattctagactggtttccttgttttgccaaggaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003743 GO:0003824 GO:0003924 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005850 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006810 GO:0008135 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

GTP_EFTU GTP_EFTU_D2 eIF2_C

Protein Analysis

95

Amino Acids

10.52

Weight (kDa)

6.39

Isoelectric Point (pI)

37.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013757)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0138081 RchiOBHm_Chr2g0138091 RchiOBHm_Chr6g0259921
rosa_laevigata	RLG00000019718 RLG00000019719 RLG00000019723 RLG00000019724
rosa_multiflora	Rmu_sc0004576.1_g000021 Rmu_sc0009049.1_g000016
rosa_roxburghii	Rroxscaffold_2G00106500 Rroxscaffold_2G00106530
rosa_rugosa	Rorug02G0349500 Rorug05G0591400
rosa_samantha	Rh2AG396200 Rh2CG382700 Rh6BG103700 Rh6CG097000 Rh6DG090700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	99
AciI	CCGC	1 cut(s)	135
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	2 cut(s)	159, 205
AgsI	TTSAA	2 cut(s)	212, 235
Alw21I	GWGCWC	1 cut(s)	21
Ama87I	CYCGRG	1 cut(s)	199
AoxI	GGCC	1 cut(s)	57
AsuC2I	CCSGG	3 cut(s)	154, 200, 201
AsuHPI	GGTGA	1 cut(s)	54
AvaI	CYCGRG	1 cut(s)	199
Bbv12I	GWGCWC	1 cut(s)	21
BclI	TGATCA	1 cut(s)	121
BcnI	CCSGG	3 cut(s)	154, 200, 201
BfaI	CTAG	1 cut(s)	255
Bme1390I	CCNGG	3 cut(s)	154, 200, 201
BmeT110I	CYCGRG	1 cut(s)	199
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	3 cut(s)	154, 200, 201
BmrI	ACTGGG	1 cut(s)	32
BmuI	ACTGGG	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	148
BpuMI	CCSGG	3 cut(s)	154, 200, 201
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	4 cut(s)	153, 199, 200, 277
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 205
Bse1I	ACTGG	2 cut(s)	38, 264
BseDI	CCNNGG	4 cut(s)	153, 199, 200, 277
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	159, 205
BseNI	ACTGG	2 cut(s)	38, 264
BshFI	GGCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	199
BsiSI	CCGG	2 cut(s)	153, 200
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	159, 205
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	1 cut(s)	59
BsoBI	CYCGRG	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	1 cut(s)	135
BspANI	GGCC	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	38, 264
BssECI	CCNNGG	4 cut(s)	153, 199, 200, 277
BssMI	GATC	1 cut(s)	121
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	277
BstACI	GRCGYC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	242
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstSCI	CCNGG	3 cut(s)	152, 198, 199
BsuRI	GGCC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	242
Cfr9I	CCCGGG	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	41
CviJI	RGCY	1 cut(s)	59
CviKI_1	RGCY	1 cut(s)	59
CviQI	GTAC	1 cut(s)	41
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	277
Eco88I	CYCGRG	1 cut(s)	199
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaiI	YATR	3 cut(s)	72, 114, 250
FaqI	GGGAC	1 cut(s)	65
FbaI	TGATCA	1 cut(s)	121
FokI	GGATG	1 cut(s)	17
FspBI	CTAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	2 cut(s)	153, 200
Hin1I	GRCGYC	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HpaII	CCGG	2 cut(s)	153, 200
HphI	GGTGA	1 cut(s)	54
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188III	TCNNGA	1 cut(s)	255
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	121
LpnPI	CCDG	6 cut(s)	51, 93, 145, 166, 213, 245
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	96
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	1 cut(s)	78
MnlI	CCTC	4 cut(s)	70, 75, 125, 184
MspI	CCGG	2 cut(s)	153, 200
MspR9I	CCNGG	3 cut(s)	154, 200, 201
NciI	CCSGG	3 cut(s)	154, 200, 201
NdeII	GATC	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	151
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
Sau3AI	GATC	1 cut(s)	121
ScrFI	CCNGG	3 cut(s)	154, 200, 201
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	4 cut(s)	67, 99, 195, 210
SmaI	CCCGGG	1 cut(s)	201
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	1 cut(s)	135
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	3 cut(s)	152, 198, 199
StyI	CCWWGG	1 cut(s)	277
TaiI	ACGT	1 cut(s)	99
TasI	AATT	1 cut(s)	78
TspDTI	ATGAA	1 cut(s)	74
TspMI	CCCGGG	1 cut(s)	199
XbaI	TCTAGA	1 cut(s)	254
XmaI	CCCGGG	1 cut(s)	199
XspI	CTAG	1 cut(s)	255
ZraI	GACGTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.