Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006169

Physical Location & Seq

Genomic Coordinates Forward (+)

77080008 .. 77082512

Gene Structure 2505 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52953

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2505 bp

ATGCCAGTATCTCTAGTTCTCTACCTTGTCTGCAAACATTTCTTTGCGGCCATGGAGTCCAAAACAAACCCAAAATTCTTGCTTTCCTTGCTTTTCTTAAGCCTAAGGCTCAAGTCCGGTATCTGCTTTGGAGCTGACACCATCACAGCAAACCAGTCTCTCTCTGGTGGCCAAACCATTGTTTCAGCTGGTGGGAAATTTGAACTGGGTTTCTTCAAACCAGGCAATACTTCAAAATACTACATAGGCATGTGGTACTACAAGACAACATTACCGGAGCAAACCATAGTCTGGGTGGCCAATAGGGTGCGGCCAGTCTCTGATAGATTTTCTTCAGAGTTGAGAATCTCAGATGGTAATTTGGTGCTGTTTAATGAGTCCAAAACCCCAATTTGGTCCACAGATGTCAGTTCAAGTTCAGCCTCTTCTATACATGTAGTTCTTTTAGATAATGGAAACCTTGTGCTAAGAGCTGGGTCTAATTCATCTTTGCCTTTATGGCAAAGTTTTGATTATCCAGCTCATACTTGGCTACCAGAAGCTAGAATTGGGTTCAACACTGTTACAAACCGAACCCAAGTCCTGACTTCATGGAAGAATTTTGAGGATCCTGCACCGGGTATTTACTCTCTAGTGCTTGACCCGAATGGAAGTGATGCATATTTCTCACTGTGGAATATGTCTAAGCAGTATTGGACTAGTGGAGCTTGGGATGCAAAGAGTGGTTTTTTCAGTATGGTTCCTGAGATGCATCTAACCTATATCTACAACTTCAGCTATGTTAAAACCAAAAATGAGAGCTACTTCACCTATTCTCTTTATGATTCTAGCATCACATCTCGATTCATTATGGATGTATCGGGTCAGGTTAAGCAATTTTCCTGGTTGCAACCTCAGGGATGGAACTTGTTTTGGTCTCAGCCGAGGAAACTATGTCAGGTTTATTCCTATTGTGGGGCATTTGGCAGTTGCAATGAGACGTCCTTGCCCTTCTGTAATTGTTTATATGGTTTTGAGCCGAAATTGAAGGTGGATTGGAATTCGCAGGTTTATTCTGGTGGCTGCAAAAGACGGACTGTGCTGAATTTTGCTAATGCTACTACCAACAATGGGAAGCAAGACCGGTTTCTAGAAATGCCTAGCATGTCTTTGCCTGACAGTGAAGTGTCTGTAGAGGCTGGGAGTACTGCGCAATGTGAATCAATCTGCTTAAGTAACCGCTCTTGCACTGCTTATGCTTATAATAGCAATGGATGTTCAATATGGATTGGAGATCTCTTGAATCTGCGACAACTCACAGCAGATGACGGTGATGGAAAAACTTTGTACCTCAGACTTGCAGCTTCCGAGTTTAAGGATCCAAAAAGTAAAAAGGGATTGATTATCGGTGTTGCAGTAGGCTCAGCTGTTGGGATAGCAGTTCTTTTAGGGCTTATTGTGTTTAGAGTGTTGAGAAACAGATATAGAGTGATTGGAAAATCAGTGGAGGGTTCATTGGTTGCATTTGAGTATAGAGATCTTCAAGAAGTAACAAAGAACTTCTCGGAGAAATTGGGGGGAGGAGGTTTTGGTTCTGTCTTCAAGGGCACAATGCCTGATTCATCAGTCATAGCAGTGAAGAAGCTCGAAAGTGTTAGCCAAGGAGAGAAGCAATTCAGAACAGAAGTCAGCACAATTGGGACAATCCAACATGTCAATCTTGTTTGGTTTCGTGGGTTCTGCTCTGAAGGTACCAAGAGGTTGTTGGTCTATGATTACATGCCTAATGGATCTCTGGATGCTCACCTTTTCAATCGTCCAAGCGATGTTTTGGAGTGGAATACAAGATACCAAATTGCTCTGGGTACAGCAAGAGGGTTGGCTTATCTTCATGAGAAATGTAGAGATTGTATCATACATTGTGACATAAAGCCAGAGAACATTCTCCTAGATACCGAACTTTGTCCCAAAGTAGCAGACTTTGGCCTGGCAAAGCTTGTTGGAAGAGAATTCAGCCGAGTCCTGACCACAATGAGAGGCACGCCAGGCTATCTTGCACCAGAGTGGATTTCAGGAGTGGCAGTCACAGCAAAAGCTGATGTTTACAGCTACGGAATGATGCTCTTCGAAATTGTATCAGGAAGACGAAACACTGAGCCATCTGAAGACGGCAAAGTTAGATTCTTCCCAACTCGGGCTGCTGGCGTGATCACGAGTAACGAAGAAGGCGATGTGCTGAGCCTATTGGACCCGAAATTAGGGAGAAATGGTGATGTGGAAGAGATCATGAGGGTTCTTAGAGTTGCTTGCTGGTGTGTCCAAGATGATGGGGCTCATAGACCATCAATGGGTCAAGTGGTGCAGATTCTCGAGGGGGTTTTGAATGTGAACTTGCCCTCAGTTCCAAGATCTCTCCAACTCTTTGGAGATAGCCAGCACATAGTTTTCTTCACCGAGTCATCTGCAAGCCAGAGCTCGCATGCACCAAGCAATACTACATCAACAACTTCATCGATCTTAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

834

Amino Acids

92.53

Weight (kDa)

7.96

Isoelectric Point (pI)

37.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B_lectin	PF01453	95 - 199	8.1e-33	D-mannose binding lectin
S_locus_glycop	PF00954	232 - 341	5.3e-28	S-locus glycoprotein domain
PAN_2	PF08276	372 - 428	1.9e-14	PAN-like domain
PK_Tyr_Ser-Thr	PF07714	514 - 781	1.8e-39	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	515 - 781	4.3e-45	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19130
fragaria_vesca	FvH4_6g44310
malus_domestica	MD09G1098900.v1.1 MD17G1087200.v1.1
prunus_persica	Prupe.3G227300_v2.0.a1 Prupe.3G227500_v2.0.a1
pyrus_communis	pycom09g02260 pycom17g08440
rosa_chinensis	RchiOBHm_Chr2g0161171 RchiOBHm_Chr2g0161191
rosa_laevigata	RLG00000021264 RLG00000021266 RLG00000029382
rosa_multiflora	Rmu_sc0006420.1_g000040 Rmu_sc0006420.1_g000045
rosa_roxburghii	Rroxscaffold_2G00089040 Rroxscaffold_2G00089060
rosa_rugosa	Rorug02G0486800 Rorug02G0486900
rosa_samantha	Rh2AG553500 Rh2BG567200 Rh2CG537300 Rh2CG537500 Rh2DG576500 Rh2DG576600
rosa_wichuraiana	Rw2G045780 Rw2G045800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1242
AatII	GACGTC	1 cut(s)	983
Acc16I	TGCGCA	1 cut(s)	1191
Acc36I	ACCTGC	1 cut(s)	1036
Acc65I	GGTACC	1 cut(s)	1730
AccB1I	GGYRCC	1 cut(s)	1730
AccB7I	CCANNNNNTGG	1 cut(s)	291
AccBSI	CCGCTC	1 cut(s)	1221
AciI	CCGC	3 cut(s)	47, 310, 1219
AclWI	GGATC	5 cut(s)	602, 615, 1352, 1365, 1777
AcoI	YGGCCR	4 cut(s)	48, 169, 297, 311
AcsI	RAATTY	6 cut(s)	74, 197, 598, 1039, 1084, 1988
AcuI	CTGAAG	4 cut(s)	318, 757, 1746, 2163
AcyI	GRCGYC	1 cut(s)	980
AfaI	GTAC	5 cut(s)	257, 1186, 1328, 1732, 1846
AfiI	CCNNNNNNNGG	8 cut(s)	291, 393, 617, 954, 1110, 2173, 2237, 2327
AflII	CTTAAG	2 cut(s)	97, 1210
AflIII	ACRYGT	2 cut(s)	433, 1690
AgeI	ACCGGT	1 cut(s)	1122
AhlI	ACTAGT	1 cut(s)	698
AjnI	CCWGG	4 cut(s)	220, 881, 1965, 2023
AjuI	GAANNNNNNNTTGG	2 cut(s)	531, 563
AleI	CACNNNNGTG	1 cut(s)	2041
Alw21I	GWGCWC	1 cut(s)	2456
Alw26I	GTCTC	4 cut(s)	162, 322, 921, 971
AlwI	GGATC	5 cut(s)	602, 615, 1352, 1365, 1777
AlwNI	CAGNNNCTG	1 cut(s)	320
Ama87I	CYCGRG	2 cut(s)	2172, 2348
AoxI	GGCC	5 cut(s)	48, 169, 297, 311, 1963
ApeKI	GCWGC	3 cut(s)	1062, 1340, 2177
ApoI	RAATTY	6 cut(s)	74, 197, 598, 1039, 1084, 1988
AsiGI	ACCGGT	1 cut(s)	1122
Asp700I	GAANNNNTTC	1 cut(s)	1652
Asp718I	GGTACC	1 cut(s)	1730
AspLEI	GCGC	1 cut(s)	1192
AspS9I	GGNCC	2 cut(s)	396, 2227
AsuC2I	CCSGG	1 cut(s)	618
AsuHPI	GGTGA	5 cut(s)	799, 1322, 1775, 2261, 2422
AsuII	TTCGAA	1 cut(s)	2106
AvaI	CYCGRG	2 cut(s)	2172, 2348
AvaII	GGWCC	2 cut(s)	396, 2227
AxyI	CCTNAGG	2 cut(s)	104, 894
BaeGI	GKGCMC	1 cut(s)	1589
BalI	TGGCCA	2 cut(s)	171, 299
BamHI	GGATCC	2 cut(s)	607, 1357
BanI	GGYRCC	1 cut(s)	1730
BanII	GRGCYC	2 cut(s)	2314, 2456
BauI	CACGAG	1 cut(s)	2191
BbsI	GAAGAC	3 cut(s)	1570, 2128, 2151
Bbv12I	GWGCWC	1 cut(s)	2456
BbvI	GCAGC	3 cut(s)	1049, 1352, 2164
BccI	CCATC	7 cut(s)	149, 347, 894, 1307, 2146, 2300, 2329
BceAI	ACGGC	1 cut(s)	2164
BcgI	CGANNNNNNTGC	2 cut(s)	2423, 2457
BciT130I	CCWGG	4 cut(s)	222, 883, 1967, 2025
BclI	TGATCA	1 cut(s)	2187
BcnI	CCSGG	1 cut(s)	618
BcoDI	GTCTC	4 cut(s)	162, 322, 921, 971
BcuI	ACTAGT	1 cut(s)	698
BfaI	CTAG	8 cut(s)	14, 543, 632, 699, 828, 1130, 1140, 1928
BfmI	CTRYAG	1 cut(s)	1170
BfrI	CTTAAG	2 cut(s)	97, 1210
BfuAI	ACCTGC	1 cut(s)	1036
BglI	GCCNNNNNGGC	1 cut(s)	499
BglII	AGATCT	3 cut(s)	1273, 1516, 2387
BisI	GCNGC	5 cut(s)	48, 311, 1063, 1341, 2178
BlpI	GCTNAGC	2 cut(s)	1402, 2216
BlsI	GCNGC	5 cut(s)	49, 312, 1064, 1342, 2179
BmcAI	AGTACT	1 cut(s)	1186
Bme1390I	CCNGG	5 cut(s)	222, 618, 883, 1967, 2025
Bme18I	GGWCC	2 cut(s)	396, 2227
BmeT110I	CYCGRG	2 cut(s)	2172, 2348
BmgT120I	GGNCC	2 cut(s)	396, 2227
BmiI	GGNNCC	5 cut(s)	609, 741, 1359, 1732, 2229
BmrFI	CCNGG	5 cut(s)	222, 618, 883, 1967, 2025
BmrI	ACTGGG	1 cut(s)	215
BmsI	GCATC	7 cut(s)	646, 703, 738, 760, 840, 1768, 2088
BmuI	ACTGGG	1 cut(s)	215
BpiI	GAAGAC	3 cut(s)	1570, 2128, 2151
Bpu1102I	GCTNAGC	2 cut(s)	1402, 2216
Bpu14I	TTCGAA	1 cut(s)	2106
BpuEI	CTTGAG	1 cut(s)	95
BpuMI	CCSGG	1 cut(s)	618
Bsa29I	ATCGAT	1 cut(s)	2492
BsaHI	GRCGYC	1 cut(s)	980
BsaI	GGTCTC	1 cut(s)	921
BsaJI	CCNNGG	3 cut(s)	51, 923, 1639
BsaWI	WCCGGW	3 cut(s)	116, 274, 1122
BsaXI	ACNNNNNCTCC	4 cut(s)	2046, 2076, 2233, 2263
Bsc4I	CCNNNNNNNGG	8 cut(s)	291, 393, 617, 954, 1110, 2173, 2237, 2327
Bse118I	RCCGGY	1 cut(s)	1122
Bse1I	ACTGG	4 cut(s)	5, 154, 210, 314
Bse21I	CCTNAGG	2 cut(s)	104, 894
Bse3DI	GCAATG	3 cut(s)	979, 1199, 1255
BseBI	CCWGG	4 cut(s)	222, 883, 1967, 2025
BseCI	ATCGAT	1 cut(s)	2492
BseDI	CCNNGG	3 cut(s)	51, 923, 1639
BseGI	GGATG	5 cut(s)	718, 859, 905, 1259, 1783
BseLI	CCNNNNNNNGG	8 cut(s)	291, 393, 617, 954, 1110, 2173, 2237, 2327
BseMI	GCAATG	3 cut(s)	979, 1199, 1255
BseMII	CTCAG	9 cut(s)	363, 735, 908, 932, 1345, 1416, 2124, 2207, 2391
BseNI	ACTGG	4 cut(s)	5, 154, 210, 314
BseRI	GAGGAG	1 cut(s)	1575
BseSI	GKGCMC	1 cut(s)	1589
BseXI	GCAGC	3 cut(s)	1049, 1352, 2164
BseYI	CCCAGC	2 cut(s)	473, 1178
BsgI	GTGCAG	2 cut(s)	597, 2360
BshFI	GGCC	5 cut(s)	50, 171, 299, 313, 1965
BshNI	GGYRCC	1 cut(s)	1730
BshTI	ACCGGT	1 cut(s)	1122
BshVI	ATCGAT	1 cut(s)	2492
BsiHKAI	GWGCWC	1 cut(s)	2456
BsiHKCI	CYCGRG	2 cut(s)	2172, 2348
BsiSI	CCGG	4 cut(s)	117, 275, 617, 1123
BslFI	GGGAC	2 cut(s)	1693, 1929
BslI	CCNNNNNNNGG	8 cut(s)	291, 393, 617, 954, 1110, 2173, 2237, 2327
BsmAI	GTCTC	4 cut(s)	162, 322, 921, 971
BsmBI	CGTCTC	1 cut(s)	971
BsmFI	GGGAC	2 cut(s)	1693, 1929
BsnI	GGCC	5 cut(s)	50, 171, 299, 313, 1965
Bso31I	GGTCTC	1 cut(s)	921
BsoBI	CYCGRG	2 cut(s)	2172, 2348
Bsp119I	TTCGAA	1 cut(s)	2106
Bsp1286I	GDGCHC	3 cut(s)	1589, 2314, 2456
Bsp143I	GATC	9 cut(s)	607, 1273, 1357, 1516, 1769, 2187, 2262, 2387, 2493
Bsp1720I	GCTNAGC	2 cut(s)	1402, 2216
Bsp19I	CCATGG	1 cut(s)	51
BspACI	CCGC	3 cut(s)	47, 310, 1219
BspANI	GGCC	5 cut(s)	50, 171, 299, 313, 1965
BspCNI	CTCAG	9 cut(s)	362, 736, 907, 931, 1344, 1415, 2125, 2208, 2390
BspDI	ATCGAT	1 cut(s)	2492
BspHI	TCATGA	2 cut(s)	1870, 2265
BspLI	GGNNCC	5 cut(s)	609, 741, 1359, 1732, 2229
BspMI	ACCTGC	1 cut(s)	1036
BspPI	GGATC	5 cut(s)	602, 615, 1352, 1365, 1777
BspQI	GCTCTTC	1 cut(s)	2108
BspT104I	TTCGAA	1 cut(s)	2106
BspT107I	GGYRCC	1 cut(s)	1730
BspTI	CTTAAG	2 cut(s)	97, 1210
BspTNI	GGTCTC	1 cut(s)	921
BsrBI	CCGCTC	1 cut(s)	1221
BsrDI	GCAATG	3 cut(s)	979, 1199, 1255
BsrFI	RCCGGY	1 cut(s)	1122
BsrI	ACTGG	4 cut(s)	5, 154, 210, 314
BssAI	RCCGGY	1 cut(s)	1122
BssECI	CCNNGG	3 cut(s)	51, 923, 1639
BssMI	GATC	9 cut(s)	607, 1273, 1357, 1516, 1769, 2187, 2262, 2387, 2493
BssNI	GRCGYC	1 cut(s)	980
BssSI	CACGAG	1 cut(s)	2191
BssT1I	CCWWGG	2 cut(s)	51, 1639
Bst2BI	CACGAG	1 cut(s)	2191
Bst2UI	CCWGG	4 cut(s)	222, 883, 1967, 2025
Bst4CI	ACNGT	5 cut(s)	562, 672, 1078, 1160, 1310
Bst6I	CTCTTC	4 cut(s)	430, 1978, 2108, 2253
BstACI	GRCGYC	1 cut(s)	980
BstAFI	CTTAAG	2 cut(s)	97, 1210
BstBI	TTCGAA	1 cut(s)	2106
BstC8I	GCNNGC	7 cut(s)	2021, 2182, 2287, 2414, 2446, 2456, 2460
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	5 cut(s)	718, 859, 905, 1259, 1783
BstHHI	GCGC	1 cut(s)	1192
BstKTI	GATC	9 cut(s)	610, 1276, 1360, 1519, 1772, 2190, 2265, 2390, 2496
BstMAI	GTCTC	4 cut(s)	162, 322, 921, 971
BstMBI	GATC	9 cut(s)	607, 1273, 1357, 1516, 1769, 2187, 2262, 2387, 2493
BstMWI	GCNNNNNNNGC	5 cut(s)	88, 499, 713, 2025, 2066
BstNI	CCWGG	4 cut(s)	222, 883, 1967, 2025
BstNSI	RCATGY	6 cut(s)	253, 437, 1147, 1694, 1762, 2462
BstSCI	CCNGG	5 cut(s)	220, 616, 881, 1965, 2023
BstSFI	CTRYAG	1 cut(s)	1170
BstSLI	GKGCMC	1 cut(s)	1589
BstV1I	GCAGC	3 cut(s)	1049, 1352, 2164
BstV2I	GAAGAC	3 cut(s)	1570, 2128, 2151
BstX2I	RGATCY	6 cut(s)	607, 1273, 1357, 1516, 1769, 2387
BstXI	CCANNNNNNTGG	2 cut(s)	2306, 2402
BstYI	RGATCY	6 cut(s)	607, 1273, 1357, 1516, 1769, 2387
Bsu15I	ATCGAT	1 cut(s)	2492
Bsu36I	CCTNAGG	2 cut(s)	104, 894
BsuRI	GGCC	5 cut(s)	50, 171, 299, 313, 1965
BsuTUI	ATCGAT	1 cut(s)	2492
BtgI	CCRYGG	1 cut(s)	51
BtgZI	GCGATG	2 cut(s)	1818, 2223
BtsCI	GGATG	5 cut(s)	718, 859, 905, 1259, 1783
BtsI	GCAGTG	2 cut(s)	1227, 1620
BtsIMutI	CAGTG	7 cut(s)	558, 668, 1165, 1227, 1488, 1620, 2130
BveI	ACCTGC	1 cut(s)	1036
Cac8I	GCNNGC	7 cut(s)	2021, 2182, 2287, 2414, 2446, 2456, 2460
CaiI	CAGNNNCTG	1 cut(s)	320
CciI	TCATGA	2 cut(s)	1870, 2265
CfoI	GCGC	1 cut(s)	1192
Cfr10I	RCCGGY	1 cut(s)	1122
Cfr13I	GGNCC	2 cut(s)	396, 2227
ClaI	ATCGAT	1 cut(s)	2492
Csp6I	GTAC	5 cut(s)	256, 1185, 1327, 1731, 1845
CspAI	ACCGGT	1 cut(s)	1122
CviQI	GTAC	5 cut(s)	256, 1185, 1327, 1731, 1845
DpnI	GATC	9 cut(s)	609, 1275, 1359, 1518, 1771, 2189, 2264, 2389, 2495
DpnII	GATC	9 cut(s)	607, 1273, 1357, 1516, 1769, 2187, 2262, 2387, 2493
EaeI	YGGCCR	4 cut(s)	48, 169, 297, 311
Eam1104I	CTCTTC	4 cut(s)	430, 1978, 2108, 2253
EarI	CTCTTC	4 cut(s)	430, 1978, 2108, 2253
Ecl136II	GAGCTC	1 cut(s)	2454
Eco130I	CCWWGG	2 cut(s)	51, 1639
Eco24I	GRGCYC	2 cut(s)	2314, 2456
Eco31I	GGTCTC	1 cut(s)	921
Eco47I	GGWCC	2 cut(s)	396, 2227
Eco53kI	GAGCTC	1 cut(s)	2454
Eco57I	CTGAAG	4 cut(s)	318, 757, 1746, 2163
Eco81I	CCTNAGG	2 cut(s)	104, 894
Eco88I	CYCGRG	2 cut(s)	2172, 2348
EcoICRI	GAGCTC	1 cut(s)	2454
EcoRI	GAATTC	2 cut(s)	1039, 1988
EcoRII	CCWGG	4 cut(s)	220, 881, 1965, 2023
EcoT14I	CCWWGG	2 cut(s)	51, 1639
EcoT22I	ATGCAT	2 cut(s)	661, 753
EcoT38I	GRGCYC	2 cut(s)	2314, 2456
ErhI	CCWWGG	2 cut(s)	51, 1639
Esp3I	CGTCTC	1 cut(s)	971
FaqI	GGGAC	2 cut(s)	1693, 1929
FbaI	TGATCA	1 cut(s)	2187
Fnu4HI	GCNGC	5 cut(s)	48, 311, 1063, 1341, 2178
FokI	GGATG	5 cut(s)	725, 866, 912, 1266, 1790
FriOI	GRGCYC	2 cut(s)	2314, 2456
Fsp4HI	GCNGC	5 cut(s)	48, 311, 1063, 1341, 2178
FspBI	CTAG	8 cut(s)	14, 543, 632, 699, 828, 1130, 1140, 1928
FspI	TGCGCA	1 cut(s)	1191
GlaI	GCGC	1 cut(s)	1191
GluI	GCNGC	5 cut(s)	48, 311, 1063, 1341, 2178
GsaI	CCCAGC	2 cut(s)	477, 1182
HaeIII	GGCC	5 cut(s)	50, 171, 299, 313, 1965
HapII	CCGG	4 cut(s)	117, 275, 617, 1123
HhaI	GCGC	1 cut(s)	1192
Hin1I	GRCGYC	1 cut(s)	980
Hin6I	GCGC	1 cut(s)	1190
HinP1I	GCGC	1 cut(s)	1190
HindIII	AAGCTT	1 cut(s)	1973
HpaII	CCGG	4 cut(s)	117, 275, 617, 1123
HphI	GGTGA	5 cut(s)	799, 1322, 1775, 2261, 2422
Hpy166II	GTNNAC	3 cut(s)	399, 2083, 2368
Hpy188I	TCNGA	9 cut(s)	322, 337, 352, 1334, 1348, 1546, 1658, 1726, 2143
Hpy8I	GTNNAC	3 cut(s)	399, 2083, 2368
HpyAV	CCTTC	4 cut(s)	1000, 1021, 1721, 2198
HpyCH4III	ACNGT	5 cut(s)	562, 672, 1078, 1160, 1310
HpyCH4IV	ACGT	1 cut(s)	980
HpyF10VI	GCNNNNNNNGC	5 cut(s)	88, 499, 713, 2025, 2066
HpySE526I	ACGT	1 cut(s)	980
Hsp92I	GRCGYC	1 cut(s)	980
HspAI	GCGC	1 cut(s)	1190
KpnI	GGTACC	1 cut(s)	1734
Ksp22I	TGATCA	1 cut(s)	2187
Kzo9I	GATC	9 cut(s)	607, 1273, 1357, 1516, 1769, 2187, 2262, 2387, 2493
LguI	GCTCTTC	1 cut(s)	2108
LmnI	GCTCC	3 cut(s)	131, 277, 704
Lsp1109I	GCAGC	3 cut(s)	1049, 1352, 2164
LweI	GCATC	7 cut(s)	646, 703, 738, 760, 840, 1768, 2088
MaeI	CTAG	8 cut(s)	14, 543, 632, 699, 828, 1130, 1140, 1928
MaeII	ACGT	1 cut(s)	980
MaeIII	GTNAC	6 cut(s)	562, 1214, 1528, 1901, 2062, 2195
MalI	GATC	9 cut(s)	609, 1275, 1359, 1518, 1771, 2189, 2264, 2389, 2495
MbiI	CCGCTC	1 cut(s)	1221
MboI	GATC	9 cut(s)	607, 1273, 1357, 1516, 1769, 2187, 2262, 2387, 2493
MfeI	CAATTG	1 cut(s)	1674
MflI	RGATCY	6 cut(s)	607, 1273, 1357, 1516, 1769, 2387
MhlI	GDGCHC	3 cut(s)	1589, 2314, 2456
MlsI	TGGCCA	2 cut(s)	171, 299
MluNI	TGGCCA	2 cut(s)	171, 299
MlyI	GAGTC	4 cut(s)	65, 386, 2007, 2444
MmeI	TCCRAC	3 cut(s)	1711, 1960, 2419
Mox20I	TGGCCA	2 cut(s)	171, 299
Mph1103I	ATGCAT	2 cut(s)	661, 753
MroXI	GAANNNNTTC	1 cut(s)	1652
MscI	TGGCCA	2 cut(s)	171, 299
MseI	TTAA	6 cut(s)	98, 372, 783, 870, 1211, 1353
MslI	CAYNNNNRTG	3 cut(s)	248, 1613, 2041
Msp20I	TGGCCA	2 cut(s)	171, 299
MspA1I	CMGCKG	2 cut(s)	188, 1406
MspCI	CTTAAG	2 cut(s)	97, 1210
MspI	CCGG	4 cut(s)	117, 275, 617, 1123
MspR9I	CCNGG	5 cut(s)	222, 618, 883, 1967, 2025
MunI	CAATTG	1 cut(s)	1674
MvaI	CCWGG	4 cut(s)	222, 883, 1967, 2025
MwoI	GCNNNNNNNGC	5 cut(s)	88, 499, 713, 2025, 2066
NciI	CCSGG	1 cut(s)	618
NcoI	CCATGG	1 cut(s)	51
NdeII	GATC	9 cut(s)	607, 1273, 1357, 1516, 1769, 2187, 2262, 2387, 2493
NlaIV	GGNNCC	5 cut(s)	609, 741, 1359, 1732, 2229
NmeAIII	GCCGAG	2 cut(s)	948, 2021
NmuCI	GTSAC	2 cut(s)	1901, 2062
NsbI	TGCGCA	1 cut(s)	1191
NsiI	ATGCAT	2 cut(s)	661, 753
NspI	RCATGY	6 cut(s)	253, 437, 1147, 1694, 1762, 2462
NspV	TTCGAA	1 cut(s)	2106
OliI	CACNNNNGTG	1 cut(s)	2041
PaeI	GCATGC	1 cut(s)	2462
PaeR7I	CTCGAG	1 cut(s)	2348
PagI	TCATGA	2 cut(s)	1870, 2265
PciI	ACATGT	2 cut(s)	433, 1690
PciSI	GCTCTTC	1 cut(s)	2108
PcsI	WCGNNNNNNNCGW	1 cut(s)	2205
PdmI	GAANNNNTTC	1 cut(s)	1652
PfeI	GAWTC	8 cut(s)	345, 824, 843, 1199, 1282, 1598, 2160, 2344
PflMI	CCANNNNNTGG	1 cut(s)	291
PinAI	ACCGGT	1 cut(s)	1122
PkrI	GCNGC	5 cut(s)	49, 312, 1064, 1342, 2179
PleI	GAGTC	4 cut(s)	64, 385, 2006, 2443
PpsI	GAGTC	4 cut(s)	64, 385, 2006, 2443
PscI	ACATGT	2 cut(s)	433, 1690
PsiI	TTATAA	1 cut(s)	1242
Psp124BI	GAGCTC	1 cut(s)	2456
Psp6I	CCWGG	4 cut(s)	220, 881, 1965, 2023
PspFI	CCCAGC	2 cut(s)	473, 1178
PspGI	CCWGG	4 cut(s)	220, 881, 1965, 2023
PspN4I	GGNNCC	5 cut(s)	609, 741, 1359, 1732, 2229
PspPI	GGNCC	2 cut(s)	396, 2227
PsrI	GAACNNNNNNTAC	1 cut(s)	32
PstNI	CAGNNNCTG	1 cut(s)	320
PsuI	RGATCY	6 cut(s)	607, 1273, 1357, 1516, 1769, 2387
PvuII	CAGCTG	2 cut(s)	188, 1406
RsaI	GTAC	5 cut(s)	257, 1186, 1328, 1732, 1846
RsaNI	GTAC	5 cut(s)	256, 1185, 1327, 1731, 1845
RseI	CAYNNNNRTG	3 cut(s)	248, 1613, 2041
SacI	GAGCTC	1 cut(s)	2456
SapI	GCTCTTC	1 cut(s)	2108
SaqAI	TTAA	6 cut(s)	98, 372, 783, 870, 1211, 1353
SatI	GCNGC	5 cut(s)	48, 311, 1063, 1341, 2178
Sau3AI	GATC	9 cut(s)	607, 1273, 1357, 1516, 1769, 2187, 2262, 2387, 2493
Sau96I	GGNCC	2 cut(s)	396, 2227
ScaI	AGTACT	1 cut(s)	1186
SchI	GAGTC	4 cut(s)	65, 386, 2007, 2444
ScrFI	CCNGG	5 cut(s)	222, 618, 883, 1967, 2025
SduI	GDGCHC	3 cut(s)	1589, 2314, 2456
SfaNI	GCATC	7 cut(s)	646, 703, 738, 760, 840, 1768, 2088
SfcI	CTRYAG	1 cut(s)	1170
Sfr274I	CTCGAG	1 cut(s)	2348
SfuI	TTCGAA	1 cut(s)	2106
SinI	GGWCC	2 cut(s)	396, 2227
SlaI	CTCGAG	1 cut(s)	2348
SmiMI	CAYNNNNRTG	3 cut(s)	248, 1613, 2041
SmlI	CTYRAG	4 cut(s)	97, 110, 1210, 2348
SmoI	CTYRAG	4 cut(s)	97, 110, 1210, 2348
SpeI	ACTAGT	1 cut(s)	698
SphI	GCATGC	1 cut(s)	2462
SsiI	CCGC	3 cut(s)	47, 310, 1219
SspMI	CTAG	8 cut(s)	14, 543, 632, 699, 828, 1130, 1140, 1928
SstI	GAGCTC	1 cut(s)	2456
StyD4I	CCNGG	5 cut(s)	220, 616, 881, 1965, 2023
StyI	CCWWGG	2 cut(s)	51, 1639
TaaI	ACNGT	5 cut(s)	562, 672, 1078, 1160, 1310
TaiI	ACGT	1 cut(s)	983
TaqI	TCGA	5 cut(s)	841, 1626, 2106, 2349, 2492
TatI	WGTACW	1 cut(s)	1184
TauI	GCSGC	2 cut(s)	50, 313
TfiI	GAWTC	8 cut(s)	345, 824, 843, 1199, 1282, 1598, 2160, 2344
Tru1I	TTAA	6 cut(s)	98, 372, 783, 870, 1211, 1353
Tru9I	TTAA	6 cut(s)	98, 372, 783, 870, 1211, 1353
TscAI	CASTG	7 cut(s)	565, 675, 1165, 1234, 1488, 1620, 2137
TseFI	GTSAC	2 cut(s)	1901, 2062
TseI	GCWGC	3 cut(s)	1062, 1340, 2177
Tsp45I	GTSAC	2 cut(s)	1901, 2062
TspDTI	ATGAA	7 cut(s)	474, 579, 835, 1482, 1590, 1859, 2478
TspGWI	ACGGA	2 cut(s)	1087, 2106
TspRI	CASTG	7 cut(s)	565, 675, 1165, 1234, 1488, 1620, 2137
Van91I	CCANNNNNTGG	1 cut(s)	291
Vha464I	CTTAAG	2 cut(s)	97, 1210
VpaK11BI	GGWCC	2 cut(s)	396, 2227
XapI	RAATTY	6 cut(s)	74, 197, 598, 1039, 1084, 1988
XbaI	TCTAGA	1 cut(s)	1129
XceI	RCATGY	6 cut(s)	253, 437, 1147, 1694, 1762, 2462
XcmI	CCANNNNNNNNNTGG	4 cut(s)	161, 292, 525, 1741
XhoI	CTCGAG	1 cut(s)	2348
XmnI	GAANNNNTTC	1 cut(s)	1652
XspI	CTAG	8 cut(s)	14, 543, 632, 699, 828, 1130, 1140, 1928
ZraI	GACGTC	1 cut(s)	981
ZrmI	AGTACT	1 cut(s)	1186
Zsp2I	ATGCAT	2 cut(s)	661, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.