Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006169

Physical Location & Seq

Genomic Coordinates Reverse (-)

10913371 .. 10916252

Gene Structure 2882 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00089040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGCCTGATTCATCAGTCATAGCAGTGAAGAAGCTCGAAAGTGTTAGCCAAGGAGAGAAGCAATTCAGAACAGAAGTCAGCACAATTGGGACAATCCAACATGTCAATCTTGTTCGGCTTCGTGGGTTCTGCTCTGAAGGTGCCAAGAGGTTGTTGGTCTATGATTACATGCCTAATGGATCTCTGGATGCTCACCTTTTCAATCAGCCAAGCGATGTTTTGGAGTGGAATACAAGATACCAAATTGCTTTGGGCACAGCAAGAGGGTTGGCTTATCTTCATGAGAAATGTAGAGACTGTATCATACATTGTGACATAAAGCCAGAAAACATTCTCCTAGATACCGAACTTTGTCCCAAAATTGCAGACTTTGGCCTGGCAAAACTTGTTGGAAGAGAGTTCAGCCGAGTCCTGACCACAATGAGAGGCACACGAGGCTATCTTGCACCAGAGTGGATTTCAGGAGTGGCAGTCACAGCGAAAGCTGATGTTTACAGCTACGGAATGATGCTTTTCGAAATTGTTTCAGGAAGACGAAACTCTGAGCCATCTGAAGACGGCAAAGTTAGATTCTTCCCGACTTGGGCTGCTGGCGTGGTCACGAGTAATGAAGAAGGCGATGTGCTGAGCCTATTGGACCCAAAATTAGGGAGAAATGGTGATGCGGAAGAGATCATGAGGGTTCTTAGAGTTGCTTGCTGGTGTGTCCAAGATGATGAGGCTCATAGACCATCAATGGGTCAAGTAGTGCAGATTCTCGAGGGGGTTTTGGATGTGAACTTGCCCTGGATTCCAAGATCACTCCAACTCTTTGGAGATAGCCAGCACATAGTTTTCTTCACAGAGTCATCTTCAAGCCAGAGCTCACATGCACCAAGCAATAACATATCAACAGCTTCATCTCAGACCAAGAGCGCTGCATCTTCAACTATCTCCAAGAGATCTGAAGATCATCAAACGAGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

322

Amino Acids

35.6

Weight (kDa)

5.8

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 251	4.4e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	6 - 252	1.6e-36	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006169)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G19130
fragaria_vesca	FvH4_6g44310
malus_domestica	MD09G1098900.v1.1 MD17G1087200.v1.1
prunus_persica	Prupe.3G227300_v2.0.a1 Prupe.3G227500_v2.0.a1
pyrus_communis	pycom09g02260 pycom17g08440
rosa_chinensis	RchiOBHm_Chr2g0161171 RchiOBHm_Chr2g0161191
rosa_laevigata	RLG00000021264 RLG00000021266 RLG00000029382
rosa_multiflora	Rmu_sc0006420.1_g000040 Rmu_sc0006420.1_g000045
rosa_roxburghii	Rroxscaffold_2G00089040 Rroxscaffold_2G00089060
rosa_rugosa	Rorug02G0486800 Rorug02G0486900
rosa_samantha	Rh2AG553500 Rh2BG567200 Rh2CG537300 Rh2CG537500 Rh2DG576500 Rh2DG576600
rosa_wichuraiana	Rw2G045780 Rw2G045800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	140
AciI	CCGC	1 cut(s)	665
AclWI	GGATC	1 cut(s)	187
AcuI	CTGAAG	3 cut(s)	156, 573, 966
AfeI	AGCGCT	1 cut(s)	916
AfiI	CCNNNNNNNGG	3 cut(s)	583, 647, 737
AflIII	ACRYGT	1 cut(s)	100
AgsI	TTSAA	3 cut(s)	202, 855, 927
AjnI	CCWGG	2 cut(s)	375, 785
AleI	CACNNNNGTG	1 cut(s)	451
AluBI	AGCT	5 cut(s)	34, 485, 498, 864, 896
AluI	AGCT	5 cut(s)	34, 485, 498, 864, 896
Alw21I	GWGCWC	2 cut(s)	866, 965
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	187
Ama87I	CYCGRG	1 cut(s)	758
Aor51HI	AGCGCT	1 cut(s)	916
AoxI	GGCC	1 cut(s)	373
ApeKI	GCWGC	2 cut(s)	587, 917
Asp700I	GAANNNNTTC	2 cut(s)	62, 330
AspLEI	GCGC	1 cut(s)	917
AspS9I	GGNCC	1 cut(s)	637
AsuHPI	GGTGA	2 cut(s)	185, 671
AsuII	TTCGAA	1 cut(s)	516
AvaI	CYCGRG	1 cut(s)	758
AvaII	GGWCC	1 cut(s)	637
BaeGI	GKGCMC	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	140
BanII	GRGCYC	1 cut(s)	866
BauI	CACGAG	2 cut(s)	432, 601
BbsI	GAAGAC	2 cut(s)	538, 561
Bbv12I	GWGCWC	2 cut(s)	866, 965
BbvI	GCAGC	2 cut(s)	574, 904
BccI	CCATC	2 cut(s)	556, 739
BceAI	ACGGC	1 cut(s)	574
BciT130I	CCWGG	2 cut(s)	377, 787
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	338
BfoI	RGCGCY	1 cut(s)	918
BglII	AGATCT	1 cut(s)	941
BisI	GCNGC	2 cut(s)	588, 918
BlpI	GCTNAGC	1 cut(s)	626
BlsI	GCNGC	2 cut(s)	589, 919
Bme1390I	CCNGG	2 cut(s)	377, 787
Bme18I	GGWCC	1 cut(s)	637
BmeT110I	CYCGRG	1 cut(s)	758
BmgT120I	GGNCC	1 cut(s)	637
BmiI	GGNNCC	2 cut(s)	142, 639
BmrFI	CCNGG	2 cut(s)	377, 787
BmsI	GCATC	4 cut(s)	178, 498, 652, 929
BpiI	GAAGAC	2 cut(s)	538, 561
Bpu1102I	GCTNAGC	1 cut(s)	626
Bpu14I	TTCGAA	1 cut(s)	516
BsaJI	CCNNGG	2 cut(s)	49, 785
BsaXI	ACNNNNNCTCC	4 cut(s)	456, 486, 643, 673
Bsc4I	CCNNNNNNNGG	3 cut(s)	583, 647, 737
BseBI	CCWGG	2 cut(s)	377, 787
BseDI	CCNNGG	2 cut(s)	49, 785
BseGI	GGATG	2 cut(s)	193, 778
BseLI	CCNNNNNNNGG	3 cut(s)	583, 647, 737
BseMII	CTCAG	3 cut(s)	534, 617, 917
BseSI	GKGCMC	1 cut(s)	257
BseXI	GCAGC	2 cut(s)	574, 904
BsgI	GTGCAG	1 cut(s)	770
BshFI	GGCC	1 cut(s)	375
BshNI	GGYRCC	1 cut(s)	140
BsiHKAI	GWGCWC	2 cut(s)	866, 965
BsiHKCI	CYCGRG	1 cut(s)	758
BslFI	GGGAC	2 cut(s)	103, 339
BslI	CCNNNNNNNGG	3 cut(s)	583, 647, 737
BsmAI	GTCTC	1 cut(s)	288
BsmFI	GGGAC	2 cut(s)	103, 339
BsnI	GGCC	1 cut(s)	375
BsoBI	CYCGRG	1 cut(s)	758
Bsp119I	TTCGAA	1 cut(s)	516
Bsp1286I	GDGCHC	3 cut(s)	257, 866, 965
Bsp143I	GATC	5 cut(s)	179, 672, 797, 941, 949
Bsp1720I	GCTNAGC	1 cut(s)	626
BspACI	CCGC	1 cut(s)	665
BspANI	GGCC	1 cut(s)	375
BspCNI	CTCAG	3 cut(s)	535, 618, 916
BspHI	TCATGA	2 cut(s)	280, 675
BspLI	GGNNCC	2 cut(s)	142, 639
BspPI	GGATC	1 cut(s)	187
BspT104I	TTCGAA	1 cut(s)	516
BspT107I	GGYRCC	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	49, 785
BssMI	GATC	5 cut(s)	179, 672, 797, 941, 949
BssSI	CACGAG	2 cut(s)	432, 601
BssT1I	CCWWGG	1 cut(s)	49
Bst2BI	CACGAG	2 cut(s)	432, 601
Bst2UI	CCWGG	2 cut(s)	377, 787
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	2 cut(s)	388, 663
BstBI	TTCGAA	1 cut(s)	516
BstC8I	GCNNGC	3 cut(s)	592, 697, 824
BstDEI	CTNAG	4 cut(s)	543, 626, 686, 903
BstF5I	GGATG	2 cut(s)	193, 778
BstH2I	RGCGCY	1 cut(s)	918
BstHHI	GCGC	1 cut(s)	917
BstKTI	GATC	5 cut(s)	182, 675, 800, 944, 952
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	5 cut(s)	179, 672, 797, 941, 949
BstMWI	GCNNNNNNNGC	2 cut(s)	435, 476
BstNI	CCWGG	2 cut(s)	377, 787
BstNSI	RCATGY	3 cut(s)	104, 172, 872
BstSCI	CCNGG	2 cut(s)	375, 785
BstSLI	GKGCMC	1 cut(s)	257
BstV1I	GCAGC	2 cut(s)	574, 904
BstV2I	GAAGAC	2 cut(s)	538, 561
BstX2I	RGATCY	2 cut(s)	179, 941
BstXI	CCANNNNNNTGG	1 cut(s)	812
BstYI	RGATCY	2 cut(s)	179, 941
BsuRI	GGCC	1 cut(s)	375
BtgZI	GCGATG	2 cut(s)	228, 633
BtsCI	GGATG	2 cut(s)	193, 778
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	3 cut(s)	592, 697, 824
CciI	TCATGA	2 cut(s)	280, 675
CfoI	GCGC	1 cut(s)	917
Cfr13I	GGNCC	1 cut(s)	637
CviAII	CATG	5 cut(s)	101, 169, 281, 676, 869
DdeI	CTNAG	4 cut(s)	543, 626, 686, 903
DpnI	GATC	5 cut(s)	181, 674, 799, 943, 951
DpnII	GATC	5 cut(s)	179, 672, 797, 941, 949
Eam1104I	CTCTTC	2 cut(s)	388, 663
EarI	CTCTTC	2 cut(s)	388, 663
Ecl136II	GAGCTC	1 cut(s)	864
Eco130I	CCWWGG	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	866
Eco47I	GGWCC	1 cut(s)	637
Eco47III	AGCGCT	1 cut(s)	916
Eco53kI	GAGCTC	1 cut(s)	864
Eco57I	CTGAAG	3 cut(s)	156, 573, 966
Eco88I	CYCGRG	1 cut(s)	758
EcoICRI	GAGCTC	1 cut(s)	864
EcoRII	CCWGG	2 cut(s)	375, 785
EcoT14I	CCWWGG	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	866
ErhI	CCWWGG	1 cut(s)	49
FaeI	CATG	5 cut(s)	104, 172, 284, 679, 872
FaqI	GGGAC	2 cut(s)	103, 339
FatI	CATG	5 cut(s)	100, 168, 280, 675, 868
Fnu4HI	GCNGC	2 cut(s)	588, 918
FokI	GGATG	2 cut(s)	200, 785
FriOI	GRGCYC	1 cut(s)	866
Fsp4HI	GCNGC	2 cut(s)	588, 918
FspBI	CTAG	1 cut(s)	338
GlaI	GCGC	1 cut(s)	916
GluI	GCNGC	2 cut(s)	588, 918
HaeII	RGCGCY	1 cut(s)	918
HaeIII	GGCC	1 cut(s)	375
HhaI	GCGC	1 cut(s)	917
Hin1II	CATG	5 cut(s)	104, 172, 284, 679, 872
Hin6I	GCGC	1 cut(s)	915
HinP1I	GCGC	1 cut(s)	915
HinfI	GANTC	6 cut(s)	8, 408, 570, 754, 790, 845
HphI	GGTGA	2 cut(s)	185, 671
Hpy166II	GTNNAC	2 cut(s)	493, 778
Hpy188I	TCNGA	6 cut(s)	68, 136, 544, 553, 906, 946
Hpy188III	TCNNGA	9 cut(s)	185, 281, 412, 462, 528, 577, 601, 676, 758
Hpy8I	GTNNAC	2 cut(s)	493, 778
HpyAV	CCTTC	2 cut(s)	131, 608
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4V	TGCA	5 cut(s)	365, 446, 751, 872, 920
HpyF10VI	GCNNNNNNNGC	2 cut(s)	435, 476
HpyF3I	CTNAG	4 cut(s)	543, 626, 686, 903
Hsp92II	CATG	5 cut(s)	104, 172, 284, 679, 872
HspAI	GCGC	1 cut(s)	915
Kzo9I	GATC	5 cut(s)	179, 672, 797, 941, 949
Lsp1109I	GCAGC	2 cut(s)	574, 904
LweI	GCATC	4 cut(s)	178, 498, 652, 929
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	3 cut(s)	311, 472, 598
MalI	GATC	5 cut(s)	181, 674, 799, 943, 951
MboI	GATC	5 cut(s)	179, 672, 797, 941, 949
MfeI	CAATTG	1 cut(s)	84
MflI	RGATCY	2 cut(s)	179, 941
MhlI	GDGCHC	3 cut(s)	257, 866, 965
MluCI	AATT	6 cut(s)	62, 84, 243, 360, 519, 644
MlyI	GAGTC	2 cut(s)	417, 854
MmeI	TCCRAC	3 cut(s)	121, 370, 829
MnlI	CCTC	7 cut(s)	141, 257, 419, 428, 672, 712, 754
MroXI	GAANNNNTTC	2 cut(s)	62, 330
MslI	CAYNNNNRTG	2 cut(s)	23, 451
MspR9I	CCNGG	2 cut(s)	377, 787
MunI	CAATTG	1 cut(s)	84
MvaI	CCWGG	2 cut(s)	377, 787
MwoI	GCNNNNNNNGC	2 cut(s)	435, 476
NdeII	GATC	5 cut(s)	179, 672, 797, 941, 949
NlaIII	CATG	5 cut(s)	104, 172, 284, 679, 872
NlaIV	GGNNCC	2 cut(s)	142, 639
NmeAIII	GCCGAG	1 cut(s)	431
NmuCI	GTSAC	3 cut(s)	311, 472, 598
NspI	RCATGY	3 cut(s)	104, 172, 872
NspV	TTCGAA	1 cut(s)	516
OliI	CACNNNNGTG	1 cut(s)	451
PaeR7I	CTCGAG	1 cut(s)	758
PagI	TCATGA	2 cut(s)	280, 675
PciI	ACATGT	1 cut(s)	100
PdmI	GAANNNNTTC	2 cut(s)	62, 330
PfeI	GAWTC	4 cut(s)	8, 570, 754, 790
PkrI	GCNGC	2 cut(s)	589, 919
PleI	GAGTC	2 cut(s)	416, 853
PpsI	GAGTC	2 cut(s)	416, 853
PscI	ACATGT	1 cut(s)	100
Psp124BI	GAGCTC	1 cut(s)	866
Psp6I	CCWGG	2 cut(s)	375, 785
PspGI	CCWGG	2 cut(s)	375, 785
PspN4I	GGNNCC	2 cut(s)	142, 639
PspPI	GGNCC	1 cut(s)	637
PsuI	RGATCY	2 cut(s)	179, 941
RseI	CAYNNNNRTG	2 cut(s)	23, 451
SacI	GAGCTC	1 cut(s)	866
SatI	GCNGC	2 cut(s)	588, 918
Sau3AI	GATC	5 cut(s)	179, 672, 797, 941, 949
Sau96I	GGNCC	1 cut(s)	637
SchI	GAGTC	2 cut(s)	417, 854
ScrFI	CCNGG	2 cut(s)	377, 787
SduI	GDGCHC	3 cut(s)	257, 866, 965
SetI	ASST	8 cut(s)	36, 142, 152, 198, 487, 500, 866, 898
SfaNI	GCATC	4 cut(s)	178, 498, 652, 929
Sfr274I	CTCGAG	1 cut(s)	758
SfuI	TTCGAA	1 cut(s)	516
SinI	GGWCC	1 cut(s)	637
SlaI	CTCGAG	1 cut(s)	758
SmiMI	CAYNNNNRTG	2 cut(s)	23, 451
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
Sse9I	AATT	6 cut(s)	62, 84, 243, 360, 519, 644
SsiI	CCGC	1 cut(s)	665
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	1 cut(s)	866
StyD4I	CCNGG	2 cut(s)	375, 785
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	1 cut(s)	299
TaqI	TCGA	3 cut(s)	36, 516, 759
TasI	AATT	6 cut(s)	62, 84, 243, 360, 519, 644
TfiI	GAWTC	4 cut(s)	8, 570, 754, 790
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	3 cut(s)	311, 472, 598
TseI	GCWGC	2 cut(s)	587, 917
Tsp45I	GTSAC	3 cut(s)	311, 472, 598
TspDTI	ATGAA	3 cut(s)	269, 624, 888
TspGWI	ACGGA	1 cut(s)	516
TspRI	CASTG	1 cut(s)	30
VpaK11BI	GGWCC	1 cut(s)	637
XceI	RCATGY	3 cut(s)	104, 172, 872
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XhoI	CTCGAG	1 cut(s)	758
XmnI	GAANNNNTTC	2 cut(s)	62, 330
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.