Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004412

Physical Location & Seq

Genomic Coordinates Reverse (-)

9633969 .. 9635308

Gene Structure 1340 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42801

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAGGAGGACCACGCGCCCGGCGCGTGCAGTCACTCTCTCAACCTCCCATCAATTTCCCCCACCGAACCTCTCTCCACCGAAACCCTAGCTTCCCTGAGATCCCTAATCATCAACCCCTCAACTCCCTCCCCCGCAATTTCTTCAATCCTCGAAACCCTAACTCGCTCTCTCCAACTCAGTCGCGACCCGCTCCGCACTCTCAAGCTCCTCTCCGACCTGGCCGCCCGACACCCCCACCTCTCCGCCCTAGTCTTCCACTCCGTCCGCTCCGACTCGCTCCTCTCCACCGAGTCGACTCGCGTCGCCGCCGAGTCACTCGATGTCTTGGCTTCGATCGCAGAGCGGAATCGAGAGCTAGCGCCGGCTGTTGAGGAAATCGACGACCGGTTGTTCGCCTCGATTTGTTTTAGTCCTTCTCCGGCGATACGGCCGTGGCTTCTCAGAAACGCCGAGAGGTTCGGTGTTAAGCCTTACTTGCTATCAAGCCTGTTTCTAGGGTTTACGAAGGATCCGTATCCGAATGTGAGGAAAGCTGCATTGGATGGACTCGTTGGTTTGAGTAAGAGCGGCGTTATTGACGACGGTGATATGATCAGAGGCTGCTACTTCCGCGCCGGTGAGCTTCTAAACGACATGGAAGACGGCGTTAGGTCCGCTGCAATTCAAGCGGTGTTTGCTTGGGGTCTAATCCTCATGGTGTGCGATTCGGAGGCGAAAGCATACTGGTCTGATGAAGTATTTGTCAAGGACATCACTGAGGATATATCACCAACCTTTTACCCTGCATTATTGAATGATTTGTTCGATGGTAAGAGACATGAGCATGGAGGTCAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009956 GO:0009987 GO:0010467 GO:0010496 GO:0012505 GO:0016070 GO:0016073 GO:0016180 GO:0022622 GO:0031123 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0034470 GO:0034472 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0090057 GO:0090304 GO:0097708 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

280

Amino Acids

30.65

Weight (kDa)

4.98

Isoelectric Point (pI)

56.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08800 AT3G08800 AT3G08800
fragaria_vesca	FvH4_6g10600 FvH4_6g10600 FvH4_6g10600 FvH4_6g10600 FvH4_6g10600
malus_domestica	MD04G1166800.v1.1
prunus_persica	Prupe.6G285000_v2.0.a1 Prupe.6G285000_v2.0.a1
pyrus_communis	pycom01g05880 pycom04g14820
rosa_chinensis	RchiOBHm_Chr3g0461591 RchiOBHm_Chr3g0461601
rosa_laevigata	RLG00000024915
rosa_multiflora	Rmu_co8098260.1_g000001 Rmu_sc0003578.1_g000001 Rmu_sc0032177.1_g000001 Rmu_sc0040016.1_g000001 Rmu_ssc0000193.1_g000007
rosa_roxburghii	Rroxscaffold_6G00418110 Rroxscaffold_6G00418480
rosa_rugosa	Rorug03G0052200 Rorug03G0052200 Rorug03G0052300 Rorug03G0052300
rosa_samantha	Rh3AG110400 Rh3BG113600 Rh3CG115500 Rh3DG115300
rosa_wichuraiana	Rw3G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	4 cut(s)	193, 270, 346, 570
AccI	GTMKAC	1 cut(s)	296
AccII	CGCG	5 cut(s)	17, 26, 186, 303, 615
AclWI	GGATC	3 cut(s)	96, 506, 519
AcoI	YGGCCR	2 cut(s)	222, 431
AgeI	ACCGGT	1 cut(s)	387
AgsI	TTSAA	3 cut(s)	147, 668, 796
AjnI	CCWGG	1 cut(s)	219
AjuI	GAANNNNNNNTTGG	2 cut(s)	524, 556
AluBI	AGCT	5 cut(s)	92, 208, 358, 536, 625
AluI	AGCT	5 cut(s)	92, 208, 358, 536, 625
Alw26I	GTCTC	1 cut(s)	811
AlwI	GGATC	3 cut(s)	96, 506, 519
AlwNI	CAGNNNCTG	1 cut(s)	603
AoxI	GGCC	2 cut(s)	222, 431
ApeKI	GCWGC	3 cut(s)	536, 603, 659
ArsI	GACNNNNNNTTYG	2 cut(s)	377, 409
AsiGI	ACCGGT	1 cut(s)	387
AspLEI	GCGC	4 cut(s)	19, 26, 364, 617
AspS9I	GGNCC	2 cut(s)	10, 654
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	3 cut(s)	599, 632, 762
AsuNHI	GCTAGC	1 cut(s)	358
AvaII	GGWCC	2 cut(s)	10, 654
BaeI	ACNNNNGTAYC	2 cut(s)	419, 452
BamHI	GGATCC	1 cut(s)	511
BbsI	GAAGAC	2 cut(s)	247, 648
BbvI	GCAGC	3 cut(s)	523, 590, 646
BccI	CCATC	3 cut(s)	58, 539, 803
BceAI	ACGGC	3 cut(s)	418, 446, 661
BciT130I	CCWGG	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	528
BclI	TGATCA	1 cut(s)	594
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	1 cut(s)	811
BfaI	CTAG	4 cut(s)	89, 251, 359, 497
BfoI	RGCGCY	1 cut(s)	365
BfuI	GTATCC	1 cut(s)	528
BisI	GCNGC	6 cut(s)	225, 309, 537, 571, 604, 660
BlsI	GCNGC	6 cut(s)	226, 310, 538, 572, 605, 661
Bme1390I	CCNGG	2 cut(s)	21, 221
Bme18I	GGWCC	2 cut(s)	10, 654
BmgT120I	GGNCC	2 cut(s)	10, 654
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	2 cut(s)	21, 221
BmtI	GCTAGC	1 cut(s)	362
BoxI	GACNNNNGTC	1 cut(s)	302
BpiI	GAAGAC	2 cut(s)	247, 648
BpuEI	CTTGAG	1 cut(s)	188
BpuMI	CCSGG	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	516
BsaJI	CCNNGG	1 cut(s)	434
BsaWI	WCCGGW	1 cut(s)	387
Bse118I	RCCGGY	3 cut(s)	364, 387, 617
Bse1I	ACTGG	1 cut(s)	731
Bse8I	GATNNNNATC	1 cut(s)	516
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	434
BseGI	GGATG	1 cut(s)	550
BseJI	GATNNNNATC	1 cut(s)	516
BseMII	CTCAG	4 cut(s)	89, 193, 457, 750
BseNI	ACTGG	1 cut(s)	731
BseRI	GAGGAG	3 cut(s)	20, 200, 272
BseX3I	CGGCCG	1 cut(s)	431
BseXI	GCAGC	3 cut(s)	523, 590, 646
BsgI	GTGCAG	1 cut(s)	49
Bsh1236I	CGCG	5 cut(s)	17, 26, 186, 303, 615
Bsh1285I	CGRYCG	3 cut(s)	339, 388, 434
BshFI	GGCC	2 cut(s)	224, 433
BshTI	ACCGGT	1 cut(s)	387
BsiEI	CGRYCG	3 cut(s)	339, 388, 434
BsiSI	CCGG	5 cut(s)	21, 365, 388, 422, 618
BsmAI	GTCTC	1 cut(s)	811
BsnI	GGCC	2 cut(s)	224, 433
Bsp143I	GATC	4 cut(s)	101, 336, 511, 594
Bsp68I	TCGCGA	1 cut(s)	186
BspANI	GGCC	2 cut(s)	224, 433
BspCNI	CTCAG	4 cut(s)	90, 192, 456, 751
BspFNI	CGCG	5 cut(s)	17, 26, 186, 303, 615
BspLI	GGNNCC	1 cut(s)	513
BspOI	GCTAGC	1 cut(s)	362
BspPI	GGATC	3 cut(s)	96, 506, 519
BsrBI	CCGCTC	4 cut(s)	193, 270, 346, 570
BsrFI	RCCGGY	3 cut(s)	364, 387, 617
BsrI	ACTGG	1 cut(s)	731
BssAI	RCCGGY	3 cut(s)	364, 387, 617
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	4 cut(s)	101, 336, 511, 594
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	587
BstC8I	GCNNGC	3 cut(s)	28, 360, 366
BstDEI	CTNAG	4 cut(s)	98, 179, 443, 759
BstDSI	CCRYGG	1 cut(s)	434
BstF5I	GGATG	1 cut(s)	550
BstFNI	CGCG	5 cut(s)	17, 26, 186, 303, 615
BstH2I	RGCGCY	1 cut(s)	365
BstHHI	GCGC	4 cut(s)	19, 26, 364, 617
BstKTI	GATC	4 cut(s)	104, 339, 514, 597
BstMAI	GTCTC	1 cut(s)	811
BstMBI	GATC	4 cut(s)	101, 336, 511, 594
BstMCI	CGRYCG	3 cut(s)	339, 388, 434
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 338, 478, 612, 668, 677
BstNI	CCWGG	1 cut(s)	221
BstPAI	GACNNNNGTC	1 cut(s)	302
BstSCI	CCNGG	2 cut(s)	19, 219
BstUI	CGCG	5 cut(s)	17, 26, 186, 303, 615
BstV1I	GCAGC	3 cut(s)	523, 590, 646
BstV2I	GAAGAC	2 cut(s)	247, 648
BstX2I	RGATCY	2 cut(s)	101, 511
BstYI	RGATCY	2 cut(s)	101, 511
BstZI	CGGCCG	1 cut(s)	431
BsuI	GTATCC	1 cut(s)	528
BsuRI	GGCC	2 cut(s)	224, 433
BtgI	CCRYGG	1 cut(s)	434
BtsCI	GGATG	1 cut(s)	550
BtsIMutI	CAGTG	1 cut(s)	756
BtuMI	TCGCGA	1 cut(s)	186
Cac8I	GCNNGC	3 cut(s)	28, 360, 366
CaiI	CAGNNNCTG	1 cut(s)	603
CfoI	GCGC	4 cut(s)	19, 26, 364, 617
Cfr10I	RCCGGY	3 cut(s)	364, 387, 617
Cfr13I	GGNCC	2 cut(s)	10, 654
CseI	GACGC	1 cut(s)	292
CspAI	ACCGGT	1 cut(s)	387
CviAII	CATG	4 cut(s)	637, 697, 821, 827
DdeI	CTNAG	4 cut(s)	98, 179, 443, 759
DpnI	GATC	4 cut(s)	103, 338, 513, 596
DpnII	GATC	4 cut(s)	101, 336, 511, 594
EaeI	YGGCCR	2 cut(s)	222, 431
EagI	CGGCCG	1 cut(s)	431
EciI	GGCGGA	1 cut(s)	235
EclXI	CGGCCG	1 cut(s)	431
Eco47I	GGWCC	2 cut(s)	10, 654
Eco52I	CGGCCG	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	219
FaeI	CATG	4 cut(s)	640, 700, 824, 830
FaiI	YATR	7 cut(s)	593, 638, 698, 724, 767, 822, 828
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FatI	CATG	4 cut(s)	636, 696, 820, 826
FauI	CCCGC	2 cut(s)	142, 198
FbaI	TGATCA	1 cut(s)	594
FblI	GTMKAC	1 cut(s)	296
Fnu4HI	GCNGC	6 cut(s)	225, 309, 537, 571, 604, 660
FokI	GGATG	1 cut(s)	557
Fsp4HI	GCNGC	6 cut(s)	225, 309, 537, 571, 604, 660
FspBI	CTAG	4 cut(s)	89, 251, 359, 497
GlaI	GCGC	4 cut(s)	18, 25, 363, 616
GluI	GCNGC	6 cut(s)	225, 309, 537, 571, 604, 660
HaeII	RGCGCY	1 cut(s)	365
HaeIII	GGCC	2 cut(s)	224, 433
HapII	CCGG	5 cut(s)	21, 365, 388, 422, 618
HgaI	GACGC	1 cut(s)	292
HhaI	GCGC	4 cut(s)	19, 26, 364, 617
Hin1II	CATG	4 cut(s)	640, 700, 824, 830
Hin6I	GCGC	4 cut(s)	17, 24, 362, 615
HinP1I	GCGC	4 cut(s)	17, 24, 362, 615
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HinfI	GANTC	7 cut(s)	275, 293, 298, 314, 349, 549, 707
HpaII	CCGG	5 cut(s)	21, 365, 388, 422, 618
HphI	GGTGA	3 cut(s)	599, 632, 762
Hpy166II	GTNNAC	2 cut(s)	297, 504
Hpy188I	TCNGA	7 cut(s)	217, 274, 446, 522, 599, 712, 733
Hpy188III	TCNNGA	3 cut(s)	185, 353, 836
Hpy8I	GTNNAC	2 cut(s)	297, 504
Hpy99I	CGWCG	3 cut(s)	308, 386, 587
HpyAV	CCTTC	2 cut(s)	426, 502
HpyCH4III	ACNGT	1 cut(s)	587
HpyCH4V	TGCA	4 cut(s)	30, 539, 662, 788
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 338, 478, 612, 668, 677
HpyF3I	CTNAG	4 cut(s)	98, 179, 443, 759
Hsp92II	CATG	4 cut(s)	640, 700, 824, 830
HspAI	GCGC	4 cut(s)	17, 24, 362, 615
KroI	GCCGGC	1 cut(s)	364
KroNI	GCCGGC	1 cut(s)	366
Ksp22I	TGATCA	1 cut(s)	594
Kzo9I	GATC	4 cut(s)	101, 336, 511, 594
LmnI	GCTCC	4 cut(s)	198, 213, 275, 285
Lsp1109I	GCAGC	3 cut(s)	523, 590, 646
MaeI	CTAG	4 cut(s)	89, 251, 359, 497
MaeIII	GTNAC	2 cut(s)	32, 315
MalI	GATC	4 cut(s)	103, 338, 513, 596
MbiI	CCGCTC	4 cut(s)	193, 270, 346, 570
MboI	GATC	4 cut(s)	101, 336, 511, 594
MboII	GAAGA	3 cut(s)	135, 247, 653
MflI	RGATCY	2 cut(s)	101, 511
MluCI	AATT	3 cut(s)	54, 138, 663
MlyI	GAGTC	5 cut(s)	269, 292, 302, 323, 543
MmeI	TCCRAC	3 cut(s)	199, 240, 297
MroNI	GCCGGC	1 cut(s)	364
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	1 cut(s)	825
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	5 cut(s)	21, 365, 388, 422, 618
MspR9I	CCNGG	2 cut(s)	21, 221
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	5 cut(s)	17, 26, 186, 303, 615
MwoI	GCNNNNNNNGC	6 cut(s)	23, 338, 478, 612, 668, 677
NaeI	GCCGGC	1 cut(s)	366
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	4 cut(s)	101, 336, 511, 594
NgoMIV	GCCGGC	1 cut(s)	364
NheI	GCTAGC	1 cut(s)	358
NlaIII	CATG	4 cut(s)	640, 700, 824, 830
NlaIV	GGNNCC	1 cut(s)	513
NmeAIII	GCCGAG	2 cut(s)	337, 478
NmuCI	GTSAC	2 cut(s)	32, 315
NruI	TCGCGA	1 cut(s)	186
PcsI	WCGNNNNNNNCGW	1 cut(s)	512
PdiI	GCCGGC	1 cut(s)	366
PfeI	GAWTC	2 cut(s)	349, 707
PinAI	ACCGGT	1 cut(s)	387
PkrI	GCNGC	6 cut(s)	226, 310, 538, 572, 605, 661
Ple19I	CGATCG	1 cut(s)	339
PleI	GAGTC	5 cut(s)	269, 292, 301, 322, 543
PpsI	GAGTC	5 cut(s)	269, 292, 301, 322, 543
PshAI	GACNNNNGTC	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	513
PspPI	GGNCC	2 cut(s)	10, 654
PstNI	CAGNNNCTG	1 cut(s)	603
PsuI	RGATCY	2 cut(s)	101, 511
PvuI	CGATCG	1 cut(s)	339
RruI	TCGCGA	1 cut(s)	186
RseI	CAYNNNNRTG	1 cut(s)	825
SalI	GTCGAC	1 cut(s)	295
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	6 cut(s)	225, 309, 537, 571, 604, 660
Sau3AI	GATC	4 cut(s)	101, 336, 511, 594
Sau96I	GGNCC	2 cut(s)	10, 654
SchI	GAGTC	5 cut(s)	269, 292, 302, 323, 543
ScrFI	CCNGG	2 cut(s)	21, 221
SgrAI	CRCCGGYG	1 cut(s)	617
SinI	GGWCC	2 cut(s)	10, 654
SmiMI	CAYNNNNRTG	1 cut(s)	825
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	3 cut(s)	54, 138, 663
SspMI	CTAG	4 cut(s)	89, 251, 359, 497
StyD4I	CCNGG	2 cut(s)	19, 219
TaaI	ACNGT	1 cut(s)	587
TaqI	TCGA	8 cut(s)	153, 296, 321, 335, 352, 381, 401, 807
TasI	AATT	3 cut(s)	54, 138, 663
TauI	GCSGC	3 cut(s)	227, 311, 573
TfiI	GAWTC	2 cut(s)	349, 707
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	1 cut(s)	763
TseFI	GTSAC	2 cut(s)	32, 315
TseI	GCWGC	3 cut(s)	536, 603, 659
Tsp45I	GTSAC	2 cut(s)	32, 315
TspDTI	ATGAA	1 cut(s)	750
TspGWI	ACGGA	2 cut(s)	253, 504
TspRI	CASTG	1 cut(s)	763
VpaK11BI	GGWCC	2 cut(s)	10, 654
XmiI	GTMKAC	1 cut(s)	296
XspI	CTAG	4 cut(s)	89, 251, 359, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.