Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004412

Physical Location & Seq

Genomic Coordinates Reverse (-)

8945386 .. 8950160

Gene Structure 4775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G009340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2850 bp

ATGGCCGTTGTCTCTTCCCGGGGTTTTTCCTTTGAAAATTTGGACTCCACTATCACTACCGGAAGCAATGGAGGAGGACCACGCGCCCGGCGCGTGCTATCACTCTCTCAACCTCCCATCAATTTCCCCCACCGAACCTCTCTCCACCGAAACCCTAGCTTCCCTGAGATCCCTAATCATCAACCCCTCAACTCCCTCCCCCGCAATTTCTTCAATCCTCGAAACCCTAACTCGCTCCTCCAACTCAGTCGCGACCCGCTCCGCACTCTCAAGCTCCTCTCCGACCTGGCCGCCCGACACCCCCACCTCTCCGCCCTAGTCTTCCACTCCGTCCGCTCCGACTCGCTCCTCTCCACCGAGTCGACTCGCGTCGCCGCCGAGTCACTCGATGTCTTGGCTTCGATCGCGGAGCGGAATCGAGAGCTAGCGCCGGCTGTTGAGGAAATCGACGACCGGTTGTTCGCCTCGATTTGTTTTAGTCCTTCTCCGGCGATACGGCCGTGGCTTCTCAGAAACGCCGAGAGGTTCGGTGTTAAGCCTTACTTGCTATCAAGCCTGTTTCTAGGGTTTACGAAGGATCCGTATCCGAATGTGAGGAAAGCTGCATTGGATGGACTCGTTGGTTTGAGTAAGAGAGGCGTTATTGACGACGGTGATATGATCAGAGGCTGCTACTTCCGCGCCGGTGAGCTTCTAAACGACATGGAAGACGGCGTTAGGTCCGCTGCAATTCAAGCGGTGTTTGCTTGTGGTCTAATCCTCATGGTGTGCGATTCGGAGGCGAAAGCATACTGGTCTGATGAAGTATTTGTCAAGATTTGTTCGATGGTAAGAGACATGAGCATGGAGGTCAGGATTGAAGCTTTTCATGCCCTTGGGAACATAGGAATGGTATCTGAAGATATTCTTTTGCAAACCCTGTCAAAGAAAGTCCTGGTGGCTACTAAAGAAAAGAAATCTCTTGCTCAGTGTTCCGATGAACAACTGGAAGTATCAGGGTCTAGTGTTGCAGGAGCTTTTATGCATGGACTTGAGGATGAATTCCATGAGGTACGAAAAGCTGCATGTCATTCTTTGGGTACACTCACCATACTCTCTTCCAAGTTTGCTGGAGAAGCCTTGAACTTACTGATGGATGTACTGAATGATGACTCAATGCTTGTGCGGTTACAAGCTTTTGAAACTATGCATCAAATGGCAACTTTTGGTCATCTGAAGGTGCAAGAAAAACACATGCATATGTTTCTTGGCACTCTGGTTGACCGTAATACCCTGACAAGATCTGCTGCAAGGAAAGTACTTAAATTGGCAAAGCTGCCAGATTTGAAGTTGTTTAGATCAACTATTGATACCCTTTTAGATAACTTGGAAATGTGTCCACAGGATGAAGCAGATATATTAAATGTTTTGTTTCATATTGGACGAAATCATGGAAAGTTTGTGGTCCGCATTATTGAGGAAGTTTCTCAGCAGATGGAGCCAGTGTCTAATGGCAAGTTAGGCTTTGATAATGTGAGGGTGGGTGCCTTGCTAGTTCTGGCCATCTCAGCTCCACTTTCACAAGAACGTGATTGCAGTATCCCACCTAGTATATTTTCTTATGCAGTTACATACCTGGGAAGAATTTCTCATGCTTTGAGTGACATTATTCATCAAGAGGGCCTGTTGAATTACTTGTCTCAATGCAGTAGATCCTCTGGACCATATGATATGGAGTTTGACTTCAGCGCGAAAAGAGGTGGAACCTCTGAAATCTTGTCTCCAACAGTTAAGAAACCAAGGGAGGCTGGAAATTCTCTTGTAGAGTACAGTCTAGATGTGCAAGATGAAGTGACCAAGTCAATGAATGTTGTTCTTGAAAAGGTGAAGGATATCTGGCCATTTGTACAAGCTGGATTCATGACTGAAGGACTCAGGACTTTAAGAAGTTGCAGGGAAGAATTGGCAACATTGACGTCTGGCTCTATTGCATCTGGTGGTAGCTTTGCCTTTACGATGCAGTATATCAAGATCATGAAACTGCTTGCAAAGGCATGGGTGAACTTCGTGCCTTCAAGACACCTTCCTTCTAGCGGGATGGGAGACTTGGACTTTGTGTTGGGAAAGCTAGACGCGAGGCTTAGTGAACTGAAAAGTACGTTTATAGGATTGTCTAAAGTGGAAGAGTTGCATATTTTGGAGCTGGTACTTGTGACTTGTATGCTCAAGCTTTCTAAAGTTGAAATTTGCTGCCATCTTGGTACTTTGAGAAAGCTCTCTTGTACAATGGCACATGCAGAATCTCTCCTTGAAGATGGAACTGTTGAACCATCCAGGTTTATGATTGAAGTCAGAAAATTATTATCTGAAATTGGGACATCTCTCAATGGTAGTTCCTGTAATCCAATTCTTTTTAGAAGAGTACTGGAAAGTTTCTTCCTTGAGCGGCTTGTGTTATGTGGTGGACTAAAGCACATAAAGGCAGATCTGGACATACCTGACAATGACTACGAACATCCTCTTTGCTTTGTCGCAGGGTTGCCCGTTGGTATACCATGCCACATCACTCTTCATAATGTTTCGGTTGAAAGCAGATTATGGCTCAAAATGACTGCCAATGGAATTGATGATACTCAGTTTGTCTCCTTGGATTCAAACCTTTTTGGAGGCTGCGATGATCATAGAATAGTTGTGTTTACCGCACCATTTTACAAAACCCCGAAAGCATTTTCTTTTACAGTCAGCGTTTGCATTTGTATGGAATATTTGTCTGAGGATGAGGATGTGTCTTTTCTCAAACGTTGTGGACCTAGACATGAGCTTGCATCTCTTTGCCGAGAAAAGGAAGTTTTTCTTTCTATGGTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009956 GO:0009987 GO:0010467 GO:0010496 GO:0012505 GO:0016070 GO:0016073 GO:0016180 GO:0022622 GO:0031123 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0034470 GO:0034472 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0090057 GO:0090304 GO:0097708 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

949

Amino Acids

105.26

Weight (kDa)

6.24

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
INTS4_C	PF25458	825 - 945	2.9e-10	Integrator subunit 4 family C-terminal Ig-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08800 AT3G08800 AT3G08800
fragaria_vesca	FvH4_6g10600 FvH4_6g10600 FvH4_6g10600 FvH4_6g10600 FvH4_6g10600
malus_domestica	MD04G1166800.v1.1
prunus_persica	Prupe.6G285000_v2.0.a1 Prupe.6G285000_v2.0.a1
pyrus_communis	pycom01g05880 pycom04g14820
rosa_chinensis	RchiOBHm_Chr3g0461591 RchiOBHm_Chr3g0461601
rosa_laevigata	RLG00000024915
rosa_multiflora	Rmu_co8098260.1_g000001 Rmu_sc0003578.1_g000001 Rmu_sc0032177.1_g000001 Rmu_sc0040016.1_g000001 Rmu_ssc0000193.1_g000007
rosa_roxburghii	Rroxscaffold_6G00418110 Rroxscaffold_6G00418480
rosa_rugosa	Rorug03G0052200 Rorug03G0052200 Rorug03G0052300 Rorug03G0052300
rosa_samantha	Rh3AG110400 Rh3BG113600 Rh3CG115500 Rh3DG115300
rosa_wichuraiana	Rw3G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1958
AccB1I	GGYRCC	1 cut(s)	1523
AccBSI	CCGCTC	4 cut(s)	259, 336, 412, 2425
AccI	GTMKAC	2 cut(s)	362, 2530
AccII	CGCG	8 cut(s)	84, 93, 252, 369, 407, 681, 1730, 2114
AclI	AACGTT	1 cut(s)	2779
AclWI	GGATC	4 cut(s)	163, 572, 585, 1686
AcoI	YGGCCR	5 cut(s)	3, 288, 497, 1539, 1877
AcsI	RAATTY	5 cut(s)	37, 1040, 1623, 1792, 2223
AcuI	CTGAAG	4 cut(s)	918, 1235, 1708, 1926
AcyI	GRCGYC	1 cut(s)	1955
AfiI	CCNNNNNNNGG	2 cut(s)	2072, 2821
AgeI	ACCGGT	1 cut(s)	453
AjnI	CCWGG	4 cut(s)	285, 933, 1614, 2312
AjuI	GAANNNNNNNTTGG	2 cut(s)	590, 622
Alw26I	GTCTC	6 cut(s)	16, 828, 1683, 1764, 2076, 2626
AlwI	GGATC	4 cut(s)	163, 572, 585, 1686
AlwNI	CAGNNNCTG	1 cut(s)	669
Ama87I	CYCGRG	1 cut(s)	18
AoxI	GGCC	6 cut(s)	3, 288, 497, 1539, 1660, 1877
ApeKI	GCWGC	8 cut(s)	602, 669, 725, 1061, 1286, 1315, 2229, 2649
ApoI	RAATTY	5 cut(s)	37, 1040, 1623, 1792, 2223
ArsI	GACNNNNNNTTYG	4 cut(s)	443, 475, 2075, 2107
AsiGI	ACCGGT	1 cut(s)	453
Asp700I	GAANNNNTTC	4 cut(s)	864, 903, 1624, 2829
AspLEI	GCGC	5 cut(s)	86, 93, 430, 683, 1730
AspS9I	GGNCC	6 cut(s)	77, 720, 1444, 1660, 1700, 2786
AsuC2I	CCSGG	3 cut(s)	19, 20, 88
AsuHPI	GGTGA	5 cut(s)	665, 698, 1078, 1876, 2050
AsuNHI	GCTAGC	1 cut(s)	424
AvaI	CYCGRG	1 cut(s)	18
AvaII	GGWCC	5 cut(s)	77, 720, 1444, 1700, 2786
BaeI	ACNNNNGTAYC	2 cut(s)	485, 518
BalI	TGGCCA	2 cut(s)	1541, 1879
BamHI	GGATCC	1 cut(s)	577
BanI	GGYRCC	1 cut(s)	1523
BbsI	GAAGAC	2 cut(s)	313, 714
BbvI	GCAGC	8 cut(s)	589, 656, 712, 1048, 1273, 1302, 2216, 2636
BceAI	ACGGC	3 cut(s)	484, 512, 727
BciT130I	CCWGG	4 cut(s)	287, 935, 1616, 2314
BciVI	GTATCC	2 cut(s)	594, 1589
BclI	TGATCA	2 cut(s)	660, 2656
BcnI	CCSGG	3 cut(s)	19, 20, 88
BcoDI	GTCTC	6 cut(s)	16, 828, 1683, 1764, 2076, 2626
BfoI	RGCGCY	1 cut(s)	431
BfuI	GTATCC	2 cut(s)	594, 1589
BglII	AGATCT	2 cut(s)	1280, 2464
BmcAI	AGTACT	2 cut(s)	1299, 2403
Bme1390I	CCNGG	7 cut(s)	19, 20, 88, 287, 935, 1616, 2314
Bme18I	GGWCC	5 cut(s)	77, 720, 1444, 1700, 2786
BmeT110I	CYCGRG	1 cut(s)	18
BmgT120I	GGNCC	6 cut(s)	77, 720, 1444, 1660, 1700, 2786
BmiI	GGNNCC	4 cut(s)	579, 1479, 1525, 1744
BmrFI	CCNGG	7 cut(s)	19, 20, 88, 287, 935, 1616, 2314
BmsI	GCATC	4 cut(s)	1198, 1979, 1986, 2813
BmtI	GCTAGC	1 cut(s)	428
BoxI	GACNNNNGTC	1 cut(s)	368
BpiI	GAAGAC	2 cut(s)	313, 714
BpmI	CTGGAG	1 cut(s)	1131
BpuEI	CTTGAG	4 cut(s)	254, 1052, 2189, 2441
BpuMI	CCSGG	3 cut(s)	19, 20, 88
BsaBI	GATNNNNATC	1 cut(s)	582
BsaHI	GRCGYC	1 cut(s)	1955
BsaJI	CCNNGG	7 cut(s)	18, 19, 500, 874, 1615, 1778, 2625
BsaWI	WCCGGW	2 cut(s)	59, 453
BsaXI	ACNNNNNCTCC	2 cut(s)	1469, 1499
Bsc4I	CCNNNNNNNGG	2 cut(s)	2072, 2821
Bse118I	RCCGGY	3 cut(s)	430, 453, 683
Bse1I	ACTGG	4 cut(s)	797, 990, 1481, 2409
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	582
BseBI	CCWGG	4 cut(s)	287, 935, 1616, 2314
BseDI	CCNNGG	7 cut(s)	18, 19, 500, 874, 1615, 1778, 2625
BseGI	GGATG	9 cut(s)	616, 1042, 1141, 1390, 2082, 2309, 2494, 2761, 2767
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	2 cut(s)	2072, 2821
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	9 cut(s)	156, 259, 523, 980, 1481, 1560, 1927, 2627, 2742
BseNI	ACTGG	4 cut(s)	797, 990, 1481, 2409
BseRI	GAGGAG	4 cut(s)	87, 227, 266, 338
BseX3I	CGGCCG	1 cut(s)	497
BseXI	GCAGC	8 cut(s)	589, 656, 712, 1048, 1273, 1302, 2216, 2636
Bsh1236I	CGCG	8 cut(s)	84, 93, 252, 369, 407, 681, 1730, 2114
Bsh1285I	CGRYCG	3 cut(s)	405, 454, 500
BshFI	GGCC	6 cut(s)	5, 290, 499, 1541, 1662, 1879
BshNI	GGYRCC	1 cut(s)	1523
BshTI	ACCGGT	1 cut(s)	453
BsiEI	CGRYCG	3 cut(s)	405, 454, 500
BsiHKCI	CYCGRG	1 cut(s)	18
BsiSI	CCGG	7 cut(s)	19, 60, 88, 431, 454, 488, 684
BslFI	GGGAC	1 cut(s)	2368
BslI	CCNNNNNNNGG	2 cut(s)	2072, 2821
BsmAI	GTCTC	6 cut(s)	16, 828, 1683, 1764, 2076, 2626
BsmFI	GGGAC	1 cut(s)	2368
BsnI	GGCC	6 cut(s)	5, 290, 499, 1541, 1662, 1879
BsoBI	CYCGRG	1 cut(s)	18
Bsp1407I	TGTACA	2 cut(s)	1885, 2261
Bsp68I	TCGCGA	1 cut(s)	252
BspANI	GGCC	6 cut(s)	5, 290, 499, 1541, 1662, 1879
BspCNI	CTCAG	9 cut(s)	157, 258, 522, 979, 1480, 1559, 1926, 2626, 2743
BspFNI	CGCG	8 cut(s)	84, 93, 252, 369, 407, 681, 1730, 2114
BspHI	TCATGA	2 cut(s)	1899, 2013
BspLI	GGNNCC	4 cut(s)	579, 1479, 1525, 1744
BspOI	GCTAGC	1 cut(s)	428
BspPI	GGATC	4 cut(s)	163, 572, 585, 1686
BspT107I	GGYRCC	1 cut(s)	1523
BsrBI	CCGCTC	4 cut(s)	259, 336, 412, 2425
BsrDI	GCAATG	1 cut(s)	73
BsrFI	RCCGGY	3 cut(s)	430, 453, 683
BsrGI	TGTACA	2 cut(s)	1885, 2261
BsrI	ACTGG	4 cut(s)	797, 990, 1481, 2409
BssAI	RCCGGY	3 cut(s)	430, 453, 683
BssECI	CCNNGG	7 cut(s)	18, 19, 500, 874, 1615, 1778, 2625
BssNAI	GTATAC	1 cut(s)	2531
BssNI	GRCGYC	1 cut(s)	1955
BssT1I	CCWWGG	3 cut(s)	874, 1778, 2625
Bst1107I	GTATAC	1 cut(s)	2531
Bst2UI	CCWGG	4 cut(s)	287, 935, 1616, 2314
Bst4CI	ACNGT	6 cut(s)	653, 1265, 1768, 1811, 2302, 2719
Bst6I	CTCTTC	5 cut(s)	19, 1102, 2157, 2392, 2553
BstACI	GRCGYC	1 cut(s)	1955
BstAUI	TGTACA	2 cut(s)	1885, 2261
BstC8I	GCNNGC	5 cut(s)	95, 426, 432, 2025, 2802
BstDSI	CCRYGG	1 cut(s)	500
BstF5I	GGATG	9 cut(s)	616, 1042, 1141, 1390, 2082, 2309, 2494, 2761, 2767
BstFNI	CGCG	8 cut(s)	84, 93, 252, 369, 407, 681, 1730, 2114
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	5 cut(s)	86, 93, 430, 683, 1730
BstMAI	GTCTC	6 cut(s)	16, 828, 1683, 1764, 2076, 2626
BstMCI	CGRYCG	3 cut(s)	405, 454, 500
BstNI	CCWGG	4 cut(s)	287, 935, 1616, 2314
BstNSI	RCATGY	3 cut(s)	1068, 1237, 2276
BstPAI	GACNNNNGTC	1 cut(s)	368
BstSCI	CCNGG	7 cut(s)	17, 18, 86, 285, 933, 1614, 2312
BstUI	CGCG	8 cut(s)	84, 93, 252, 369, 407, 681, 1730, 2114
BstV1I	GCAGC	8 cut(s)	589, 656, 712, 1048, 1273, 1302, 2216, 2636
BstV2I	GAAGAC	2 cut(s)	313, 714
BstX2I	RGATCY	5 cut(s)	168, 577, 1280, 1691, 2464
BstYI	RGATCY	5 cut(s)	168, 577, 1280, 1691, 2464
BstZ17I	GTATAC	1 cut(s)	2531
BstZI	CGGCCG	1 cut(s)	497
BsuI	GTATCC	2 cut(s)	594, 1589
BsuRI	GGCC	6 cut(s)	5, 290, 499, 1541, 1662, 1879
BtgI	CCRYGG	1 cut(s)	500
BtgZI	GCGATG	1 cut(s)	2667
BtsCI	GGATG	9 cut(s)	616, 1042, 1141, 1390, 2082, 2309, 2494, 2761, 2767
BtsIMutI	CAGTG	2 cut(s)	974, 1488
BtuMI	TCGCGA	1 cut(s)	252
Cac8I	GCNNGC	5 cut(s)	95, 426, 432, 2025, 2802
CaiI	CAGNNNCTG	1 cut(s)	669
CciI	TCATGA	2 cut(s)	1899, 2013
CfoI	GCGC	5 cut(s)	86, 93, 430, 683, 1730
Cfr10I	RCCGGY	3 cut(s)	430, 453, 683
Cfr13I	GGNCC	6 cut(s)	77, 720, 1444, 1660, 1700, 2786
Cfr9I	CCCGGG	1 cut(s)	18
CseI	GACGC	2 cut(s)	358, 2120
CspAI	ACCGGT	1 cut(s)	453
CspCI	CAANNNNNGTGG	2 cut(s)	2764, 2799
EaeI	YGGCCR	5 cut(s)	3, 288, 497, 1539, 1877
EagI	CGGCCG	1 cut(s)	497
Eam1104I	CTCTTC	5 cut(s)	19, 1102, 2157, 2392, 2553
EarI	CTCTTC	5 cut(s)	19, 1102, 2157, 2392, 2553
EciI	GGCGGA	1 cut(s)	301
EclXI	CGGCCG	1 cut(s)	497
Eco130I	CCWWGG	3 cut(s)	874, 1778, 2625
Eco32I	GATATC	1 cut(s)	1873
Eco47I	GGWCC	5 cut(s)	77, 720, 1444, 1700, 2786
Eco52I	CGGCCG	1 cut(s)	497
Eco57I	CTGAAG	4 cut(s)	918, 1235, 1708, 1926
Eco88I	CYCGRG	1 cut(s)	18
EcoO109I	RGGNCCY	1 cut(s)	1660
EcoRI	GAATTC	1 cut(s)	1040
EcoRII	CCWGG	4 cut(s)	285, 933, 1614, 2312
EcoRV	GATATC	1 cut(s)	1873
EcoT14I	CCWWGG	3 cut(s)	874, 1778, 2625
EcoT22I	ATGCAT	3 cut(s)	1026, 1191, 1239
ErhI	CCWWGG	3 cut(s)	874, 1778, 2625
FalI	AAGNNNNNCTT	8 cut(s)	527, 559, 891, 923, 1487, 1519, 2817, 2849
FaqI	GGGAC	1 cut(s)	2368
FauI	CCCGC	3 cut(s)	209, 264, 2066
FauNDI	CATATG	2 cut(s)	1239, 1705
FbaI	TGATCA	2 cut(s)	660, 2656
FblI	GTMKAC	2 cut(s)	362, 2530
FokI	GGATG	9 cut(s)	623, 1049, 1148, 1397, 2089, 2296, 2481, 2768, 2774
GlaI	GCGC	5 cut(s)	85, 92, 429, 682, 1729
GsuI	CTGGAG	1 cut(s)	1131
HaeII	RGCGCY	1 cut(s)	431
HaeIII	GGCC	6 cut(s)	5, 290, 499, 1541, 1662, 1879
HapII	CCGG	7 cut(s)	19, 60, 88, 431, 454, 488, 684
HgaI	GACGC	2 cut(s)	358, 2120
HhaI	GCGC	5 cut(s)	86, 93, 430, 683, 1730
Hin1I	GRCGYC	1 cut(s)	1955
Hin6I	GCGC	5 cut(s)	84, 91, 428, 681, 1728
HinP1I	GCGC	5 cut(s)	84, 91, 428, 681, 1728
HincII	GTYRAC	2 cut(s)	363, 1261
HindII	GTYRAC	2 cut(s)	363, 1261
HindIII	AAGCTT	3 cut(s)	861, 1173, 2207
HpaII	CCGG	7 cut(s)	19, 60, 88, 431, 454, 488, 684
HphI	GGTGA	5 cut(s)	665, 698, 1078, 1876, 2050
Hpy99I	CGWCG	3 cut(s)	374, 452, 653
HpyAV	CCTTC	8 cut(s)	492, 568, 1210, 1861, 1901, 2061, 2072, 2076
HpyCH4III	ACNGT	6 cut(s)	653, 1265, 1768, 1811, 2302, 2719
HpyCH4IV	ACGT	4 cut(s)	1567, 1955, 2138, 2779
HpySE526I	ACGT	4 cut(s)	1567, 1955, 2138, 2779
Hsp92I	GRCGYC	1 cut(s)	1955
HspAI	GCGC	5 cut(s)	84, 91, 428, 681, 1728
KroI	GCCGGC	1 cut(s)	430
KroNI	GCCGGC	1 cut(s)	432
Ksp22I	TGATCA	2 cut(s)	660, 2656
Lsp1109I	GCAGC	8 cut(s)	589, 656, 712, 1048, 1273, 1302, 2216, 2636
LweI	GCATC	4 cut(s)	1198, 1979, 1986, 2813
MaeII	ACGT	4 cut(s)	1567, 1955, 2138, 2779
MaeIII	GTNAC	6 cut(s)	381, 1167, 1606, 1640, 1831, 2191
MbiI	CCGCTC	4 cut(s)	259, 336, 412, 2425
MflI	RGATCY	5 cut(s)	168, 577, 1280, 1691, 2464
MlsI	TGGCCA	2 cut(s)	1541, 1879
MluNI	TGGCCA	2 cut(s)	1541, 1879
MlyI	GAGTC	8 cut(s)	38, 335, 358, 368, 389, 609, 1145, 1905
MmeI	TCCRAC	4 cut(s)	265, 306, 363, 1787
Mox20I	TGGCCA	2 cut(s)	1541, 1879
Mph1103I	ATGCAT	3 cut(s)	1026, 1191, 1239
MroNI	GCCGGC	1 cut(s)	430
MroXI	GAANNNNTTC	4 cut(s)	864, 903, 1624, 2829
MscI	TGGCCA	2 cut(s)	1541, 1879
MseI	TTAA	5 cut(s)	534, 1302, 1400, 1770, 1922
MslI	CAYNNNNRTG	4 cut(s)	842, 887, 1238, 2735
Msp20I	TGGCCA	2 cut(s)	1541, 1879
MspA1I	CMGCKG	1 cut(s)	725
MspI	CCGG	7 cut(s)	19, 60, 88, 431, 454, 488, 684
MspR9I	CCNGG	7 cut(s)	19, 20, 88, 287, 935, 1616, 2314
MvaI	CCWGG	4 cut(s)	287, 935, 1616, 2314
MvnI	CGCG	8 cut(s)	84, 93, 252, 369, 407, 681, 1730, 2114
NaeI	GCCGGC	1 cut(s)	432
NciI	CCSGG	3 cut(s)	19, 20, 88
NdeI	CATATG	2 cut(s)	1239, 1705
NgoMIV	GCCGGC	1 cut(s)	430
NheI	GCTAGC	1 cut(s)	424
NlaIV	GGNNCC	4 cut(s)	579, 1479, 1525, 1744
NmeAIII	GCCGAG	3 cut(s)	403, 544, 2840
NmuCI	GTSAC	4 cut(s)	381, 1640, 1831, 2191
NruI	TCGCGA	1 cut(s)	252
NsiI	ATGCAT	3 cut(s)	1026, 1191, 1239
NspI	RCATGY	3 cut(s)	1068, 1237, 2276
PagI	TCATGA	2 cut(s)	1899, 2013
PcsI	WCGNNNNNNNCGW	1 cut(s)	578
PdiI	GCCGGC	1 cut(s)	432
PdmI	GAANNNNTTC	4 cut(s)	864, 903, 1624, 2829
PfeI	GAWTC	5 cut(s)	415, 773, 1896, 2279, 2630
PflFI	GACNNNGTC	1 cut(s)	1837
PinAI	ACCGGT	1 cut(s)	453
Ple19I	CGATCG	1 cut(s)	405
PleI	GAGTC	8 cut(s)	38, 335, 358, 367, 388, 609, 1145, 1905
PpsI	GAGTC	8 cut(s)	38, 335, 358, 367, 388, 609, 1145, 1905
PshAI	GACNNNNGTC	1 cut(s)	368
Psp1406I	AACGTT	1 cut(s)	2779
Psp6I	CCWGG	4 cut(s)	285, 933, 1614, 2312
PspGI	CCWGG	4 cut(s)	285, 933, 1614, 2312
PspN4I	GGNNCC	4 cut(s)	579, 1479, 1525, 1744
PspPI	GGNCC	6 cut(s)	77, 720, 1444, 1660, 1700, 2786
PstNI	CAGNNNCTG	1 cut(s)	669
PsuI	RGATCY	5 cut(s)	168, 577, 1280, 1691, 2464
PsyI	GACNNNGTC	1 cut(s)	1837
PvuI	CGATCG	1 cut(s)	405
RruI	TCGCGA	1 cut(s)	252
RseI	CAYNNNNRTG	4 cut(s)	842, 887, 1238, 2735
SalI	GTCGAC	1 cut(s)	361
SaqAI	TTAA	5 cut(s)	534, 1302, 1400, 1770, 1922
Sau96I	GGNCC	6 cut(s)	77, 720, 1444, 1660, 1700, 2786
ScaI	AGTACT	2 cut(s)	1299, 2403
SchI	GAGTC	8 cut(s)	38, 335, 358, 368, 389, 609, 1145, 1905
ScrFI	CCNGG	7 cut(s)	19, 20, 88, 287, 935, 1616, 2314
SfaNI	GCATC	4 cut(s)	1198, 1979, 1986, 2813
SgrAI	CRCCGGYG	1 cut(s)	683
SinI	GGWCC	5 cut(s)	77, 720, 1444, 1700, 2786
SmaI	CCCGGG	1 cut(s)	20
SmiMI	CAYNNNNRTG	4 cut(s)	842, 887, 1238, 2735
SmlI	CTYRAG	4 cut(s)	269, 1031, 2204, 2420
SmoI	CTYRAG	4 cut(s)	269, 1031, 2204, 2420
SspI	AATATT	1 cut(s)	2744
StyD4I	CCNGG	7 cut(s)	17, 18, 86, 285, 933, 1614, 2312
StyI	CCWWGG	3 cut(s)	874, 1778, 2625
TaaI	ACNGT	6 cut(s)	653, 1265, 1768, 1811, 2302, 2719
TaiI	ACGT	4 cut(s)	1570, 1958, 2141, 2782
TaqI	TCGA	8 cut(s)	220, 362, 387, 401, 418, 447, 467, 824
TatI	WGTACW	6 cut(s)	1138, 1297, 1806, 1885, 2261, 2401
TauI	GCSGC	3 cut(s)	293, 377, 2428
TfiI	GAWTC	5 cut(s)	415, 773, 1896, 2279, 2630
Tru1I	TTAA	5 cut(s)	534, 1302, 1400, 1770, 1922
Tru9I	TTAA	5 cut(s)	534, 1302, 1400, 1770, 1922
TscAI	CASTG	2 cut(s)	974, 1488
TseFI	GTSAC	4 cut(s)	381, 1640, 1831, 2191
TseI	GCWGC	8 cut(s)	602, 669, 725, 1061, 1286, 1315, 2229, 2649
Tsp45I	GTSAC	4 cut(s)	381, 1640, 1831, 2191
TspGWI	ACGGA	2 cut(s)	319, 570
TspMI	CCCGGG	1 cut(s)	18
TspRI	CASTG	2 cut(s)	974, 1488
Tth111I	GACNNNGTC	1 cut(s)	1837
VpaK11BI	GGWCC	5 cut(s)	77, 720, 1444, 1700, 2786
XapI	RAATTY	5 cut(s)	37, 1040, 1623, 1792, 2223
XbaI	TCTAGA	1 cut(s)	1813
XceI	RCATGY	3 cut(s)	1068, 1237, 2276
XmaI	CCCGGG	1 cut(s)	18
XmiI	GTMKAC	2 cut(s)	362, 2530
XmnI	GAANNNNTTC	4 cut(s)	864, 903, 1624, 2829
ZraI	GACGTC	1 cut(s)	1956
ZrmI	AGTACT	2 cut(s)	1299, 2403
Zsp2I	ATGCAT	3 cut(s)	1026, 1191, 1239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.