Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040016.1

Orthogroup ID

OG0004412

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1474

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040016.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1135 bp

gtttgacttcagcgcgaaaagaggtggaacctctgaaatcttgtctccaacagttaagaaaccaagggaggctggaaattctcttgtagagtacagtctagatgtgcaagatgaagtgaccaagtcaatgaatgttgttcttgaaaaggtgaaggatatctggccatttgtacaagctggattcatgactgaaggactcaggactttaagaagttgcagggaagaattggcaacattgacgtctggctctattgcatctggtggtagctttgcctttacgatgcagtatatcaagatcatgaaactgcttgcaaaggcaggggtgaacttcgtgccttcaagacaccttccttctagcgggatgggagacttggactttgtgttgggaaagctagacgcgaggcttagtgaactgaaaagtacgtttataggattgtctaaagtggaagagttgcatattttggagctggtacttgtgacttgtatgctcaagctttctaaagttgaaatttgctgccatcttggtactttgagaaagctctcttgtacaatggcacatgcggaatctctccttgaagatggaactgttgaaccatccaggtttatgattgaagtcagaaaattattatctgaaattgggacatctctcaatggtagttcctgtaatccaattctttttagaagagtactggaaagtttcttccttgagcggcttgtgttatgtggtggactaaagcacataaaggcagatctggacatacctgacaatgactacgaacatcctctttgctttgtcgcagggttgcccgttggtataccatgccacatcactcttcataatgtttcggttgaaagcagattatggctcaaaatgactgccaatggaattgatgatactcagtttgtctccttggattcaaacctctttggaggctgcgatgatcatagagtagttgtgtttaccgcaccattttacaaaaccccgaaagcattttcttttacagtcagcgtttgcatttgtatggaatatttgtctgaggatgaggatgtgtcttttctcaaacgttgtggacctagacatgagcttgcatctctttgccgagaaaaggaagtttttctttctatggtcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009956 GO:0009987 GO:0010467 GO:0010496 GO:0012505 GO:0016070 GO:0016073 GO:0016180 GO:0022622 GO:0031123 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0034470 GO:0034472 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0090057 GO:0090304 GO:0097708 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

377

Amino Acids

41.84

Weight (kDa)

6.1

Isoelectric Point (pI)

43.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08800 AT3G08800 AT3G08800
fragaria_vesca	FvH4_6g10600 FvH4_6g10600 FvH4_6g10600 FvH4_6g10600 FvH4_6g10600
malus_domestica	MD04G1166800.v1.1
prunus_persica	Prupe.6G285000_v2.0.a1 Prupe.6G285000_v2.0.a1
pyrus_communis	pycom01g05880 pycom04g14820
rosa_chinensis	RchiOBHm_Chr3g0461591 RchiOBHm_Chr3g0461601
rosa_laevigata	RLG00000024915
rosa_multiflora	Rmu_co8098260.1_g000001 Rmu_sc0003578.1_g000001 Rmu_sc0032177.1_g000001 Rmu_sc0040016.1_g000001 Rmu_ssc0000193.1_g000007
rosa_roxburghii	Rroxscaffold_6G00418110 Rroxscaffold_6G00418480
rosa_rugosa	Rorug03G0052200 Rorug03G0052200 Rorug03G0052300 Rorug03G0052300
rosa_samantha	Rh3AG110400 Rh3BG113600 Rh3CG115500 Rh3DG115300
rosa_wichuraiana	Rw3G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	243
AccBSI	CCGCTC	1 cut(s)	710
AccI	GTMKAC	1 cut(s)	815
AccII	CGCG	2 cut(s)	15, 399
AciI	CCGC	4 cut(s)	358, 561, 710, 964
AclI	AACGTT	1 cut(s)	1064
AcoI	YGGCCR	1 cut(s)	162
AcsI	RAATTY	2 cut(s)	77, 508
AcuI	CTGAAG	1 cut(s)	211
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	7 cut(s)	93, 172, 422, 472, 527, 548, 688
AfiI	CCNNNNNNNGG	2 cut(s)	357, 1106
AgsI	TTSAA	8 cut(s)	144, 340, 507, 576, 591, 612, 852, 919
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	7 cut(s)	177, 268, 392, 467, 494, 539, 1085
AluI	AGCT	7 cut(s)	177, 268, 392, 467, 494, 539, 1085
Alw26I	GTCTC	3 cut(s)	49, 361, 911
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	2 cut(s)	514, 934
ApoI	RAATTY	2 cut(s)	77, 508
ArsI	GACNNNNNNTTYG	2 cut(s)	360, 392
Asp700I	GAANNNNTTC	1 cut(s)	1114
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	1 cut(s)	1071
AsuHPI	GGTGA	2 cut(s)	161, 335
AvaII	GGWCC	1 cut(s)	1071
BalI	TGGCCA	1 cut(s)	164
BbvI	GCAGC	2 cut(s)	501, 921
BccI	CCATC	4 cut(s)	356, 526, 573, 602
BciT130I	CCWGG	1 cut(s)	599
BclI	TGATCA	1 cut(s)	941
BcoDI	GTCTC	3 cut(s)	49, 361, 911
BfaI	CTAG	4 cut(s)	99, 355, 393, 1075
BglII	AGATCT	1 cut(s)	749
BisI	GCNGC	3 cut(s)	515, 711, 935
BlsI	GCNGC	3 cut(s)	516, 712, 936
BmcAI	AGTACT	1 cut(s)	688
Bme1390I	CCNGG	1 cut(s)	599
Bme18I	GGWCC	1 cut(s)	1071
BmgT120I	GGNCC	1 cut(s)	1071
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	599
BmsI	GCATC	3 cut(s)	264, 271, 1098
BpuEI	CTTGAG	2 cut(s)	474, 726
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	63, 910
Bsc4I	CCNNNNNNNGG	2 cut(s)	357, 1106
Bse1I	ACTGG	1 cut(s)	694
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	2 cut(s)	63, 910
BseGI	GGATG	5 cut(s)	367, 594, 779, 1046, 1052
BseLI	CCNNNNNNNGG	2 cut(s)	357, 1106
BseMII	CTCAG	3 cut(s)	212, 912, 1027
BseNI	ACTGG	1 cut(s)	694
BseXI	GCAGC	2 cut(s)	501, 921
Bsh1236I	CGCG	2 cut(s)	15, 399
BshFI	GGCC	1 cut(s)	164
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	2 cut(s)	357, 1106
BsmAI	GTCTC	3 cut(s)	49, 361, 911
BsmFI	GGGAC	1 cut(s)	653
BsnI	GGCC	1 cut(s)	164
Bsp1407I	TGTACA	2 cut(s)	170, 546
Bsp143I	GATC	3 cut(s)	295, 749, 941
BspACI	CCGC	4 cut(s)	358, 561, 710, 964
BspANI	GGCC	1 cut(s)	164
BspCNI	CTCAG	3 cut(s)	211, 911, 1028
BspFNI	CGCG	2 cut(s)	15, 399
BspHI	TCATGA	2 cut(s)	184, 298
BspLI	GGNNCC	1 cut(s)	29
BsrBI	CCGCTC	1 cut(s)	710
BsrGI	TGTACA	2 cut(s)	170, 546
BsrI	ACTGG	1 cut(s)	694
BssECI	CCNNGG	2 cut(s)	63, 910
BssMI	GATC	3 cut(s)	295, 749, 941
BssNAI	GTATAC	1 cut(s)	816
BssNI	GRCGYC	1 cut(s)	240
BssT1I	CCWWGG	2 cut(s)	63, 910
Bst1107I	GTATAC	1 cut(s)	816
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	4 cut(s)	53, 96, 587, 1004
Bst6I	CTCTTC	3 cut(s)	442, 677, 838
BstACI	GRCGYC	1 cut(s)	240
BstAUI	TGTACA	2 cut(s)	170, 546
BstC8I	GCNNGC	2 cut(s)	310, 1087
BstDEI	CTNAG	4 cut(s)	198, 405, 898, 1036
BstF5I	GGATG	5 cut(s)	367, 594, 779, 1046, 1052
BstFNI	CGCG	2 cut(s)	15, 399
BstHHI	GCGC	1 cut(s)	15
BstKTI	GATC	3 cut(s)	298, 752, 944
BstMAI	GTCTC	3 cut(s)	49, 361, 911
BstMBI	GATC	3 cut(s)	295, 749, 941
BstNI	CCWGG	1 cut(s)	599
BstNSI	RCATGY	1 cut(s)	561
BstSCI	CCNGG	1 cut(s)	597
BstUI	CGCG	2 cut(s)	15, 399
BstV1I	GCAGC	2 cut(s)	501, 921
BstX2I	RGATCY	1 cut(s)	749
BstYI	RGATCY	1 cut(s)	749
BstZ17I	GTATAC	1 cut(s)	816
BsuRI	GGCC	1 cut(s)	164
BtgZI	GCGATG	1 cut(s)	952
BtsCI	GGATG	5 cut(s)	367, 594, 779, 1046, 1052
Cac8I	GCNNGC	2 cut(s)	310, 1087
CciI	TCATGA	2 cut(s)	184, 298
CfoI	GCGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	1071
CseI	GACGC	1 cut(s)	405
Csp6I	GTAC	7 cut(s)	92, 171, 421, 471, 526, 547, 687
CspCI	CAANNNNNGTGG	2 cut(s)	1049, 1084
CviAII	CATG	5 cut(s)	185, 299, 558, 820, 1080
CviQI	GTAC	7 cut(s)	92, 171, 421, 471, 526, 547, 687
DdeI	CTNAG	4 cut(s)	198, 405, 898, 1036
DpnI	GATC	3 cut(s)	297, 751, 943
DpnII	GATC	3 cut(s)	295, 749, 941
EaeI	YGGCCR	1 cut(s)	162
Eam1104I	CTCTTC	3 cut(s)	442, 677, 838
EarI	CTCTTC	3 cut(s)	442, 677, 838
Eco130I	CCWWGG	2 cut(s)	63, 910
Eco32I	GATATC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	1071
Eco57I	CTGAAG	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	597
EcoRV	GATATC	1 cut(s)	158
EcoT14I	CCWWGG	2 cut(s)	63, 910
ErhI	CCWWGG	2 cut(s)	63, 910
FaeI	CATG	5 cut(s)	188, 302, 561, 823, 1083
FalI	AAGNNNNNCTT	2 cut(s)	1102, 1134
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	5 cut(s)	184, 298, 557, 819, 1079
FauI	CCCGC	1 cut(s)	351
FbaI	TGATCA	1 cut(s)	941
FblI	GTMKAC	1 cut(s)	815
Fnu4HI	GCNGC	3 cut(s)	515, 711, 935
FokI	GGATG	5 cut(s)	374, 581, 766, 1053, 1059
Fsp4HI	GCNGC	3 cut(s)	515, 711, 935
FspBI	CTAG	4 cut(s)	99, 355, 393, 1075
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	3 cut(s)	515, 711, 935
HaeIII	GGCC	1 cut(s)	164
HgaI	GACGC	1 cut(s)	405
HhaI	GCGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	5 cut(s)	188, 302, 561, 823, 1083
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	492
HinfI	GANTC	4 cut(s)	181, 196, 564, 915
HphI	GGTGA	2 cut(s)	161, 335
Hpy166II	GTNNAC	6 cut(s)	326, 411, 729, 816, 961, 1071
Hpy188I	TCNGA	4 cut(s)	35, 618, 632, 1037
Hpy188III	TCNNGA	8 cut(s)	99, 141, 185, 200, 293, 299, 340, 753
Hpy8I	GTNNAC	6 cut(s)	326, 411, 729, 816, 961, 1071
HpyAV	CCTTC	5 cut(s)	146, 186, 346, 357, 361
HpyCH4III	ACNGT	4 cut(s)	53, 96, 587, 1004
HpyCH4IV	ACGT	3 cut(s)	240, 423, 1064
HpyCH4V	TGCA	8 cut(s)	107, 217, 255, 284, 312, 455, 1015, 1089
HpyF3I	CTNAG	4 cut(s)	198, 405, 898, 1036
HpySE526I	ACGT	3 cut(s)	240, 423, 1064
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	5 cut(s)	188, 302, 561, 823, 1083
HspAI	GCGC	1 cut(s)	13
Ksp22I	TGATCA	1 cut(s)	941
Kzo9I	GATC	3 cut(s)	295, 749, 941
LmnI	GCTCC	1 cut(s)	464
Lsp1109I	GCAGC	2 cut(s)	501, 921
LweI	GCATC	3 cut(s)	264, 271, 1098
MaeI	CTAG	4 cut(s)	99, 355, 393, 1075
MaeII	ACGT	3 cut(s)	240, 423, 1064
MaeIII	GTNAC	2 cut(s)	116, 476
MalI	GATC	3 cut(s)	297, 751, 943
MbiI	CCGCTC	1 cut(s)	710
MboI	GATC	3 cut(s)	295, 749, 941
MboII	GAAGA	6 cut(s)	234, 459, 588, 692, 694, 825
MflI	RGATCY	1 cut(s)	749
MlsI	TGGCCA	1 cut(s)	164
MluCI	AATT	7 cut(s)	77, 225, 508, 621, 634, 670, 886
MluNI	TGGCCA	1 cut(s)	164
MlyI	GAGTC	1 cut(s)	190
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	9 cut(s)	15, 41, 62, 394, 793, 924, 933, 1031, 1037
Mox20I	TGGCCA	1 cut(s)	164
MroXI	GAANNNNTTC	1 cut(s)	1114
MscI	TGGCCA	1 cut(s)	164
MseI	TTAA	2 cut(s)	55, 207
MslI	CAYNNNNRTG	1 cut(s)	1020
Msp20I	TGGCCA	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	599
MvaI	CCWGG	1 cut(s)	599
MvnI	CGCG	2 cut(s)	15, 399
NdeII	GATC	3 cut(s)	295, 749, 941
NlaIII	CATG	5 cut(s)	188, 302, 561, 823, 1083
NlaIV	GGNNCC	1 cut(s)	29
NmeAIII	GCCGAG	1 cut(s)	1125
NmuCI	GTSAC	2 cut(s)	116, 476
NspI	RCATGY	1 cut(s)	561
PagI	TCATGA	2 cut(s)	184, 298
PdmI	GAANNNNTTC	1 cut(s)	1114
PfeI	GAWTC	3 cut(s)	181, 564, 915
PflFI	GACNNNGTC	1 cut(s)	122
PkrI	GCNGC	3 cut(s)	516, 712, 936
PleI	GAGTC	1 cut(s)	190
PpsI	GAGTC	1 cut(s)	190
Psp1406I	AACGTT	1 cut(s)	1064
Psp6I	CCWGG	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	597
PspN4I	GGNNCC	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	1071
PsuI	RGATCY	1 cut(s)	749
PsyI	GACNNNGTC	1 cut(s)	122
RsaI	GTAC	7 cut(s)	93, 172, 422, 472, 527, 548, 688
RsaNI	GTAC	7 cut(s)	92, 171, 421, 471, 526, 547, 687
RseI	CAYNNNNRTG	1 cut(s)	1020
SaqAI	TTAA	2 cut(s)	55, 207
SatI	GCNGC	3 cut(s)	515, 711, 935
Sau3AI	GATC	3 cut(s)	295, 749, 941
Sau96I	GGNCC	1 cut(s)	1071
ScaI	AGTACT	1 cut(s)	688
SchI	GAGTC	1 cut(s)	190
ScrFI	CCNGG	1 cut(s)	599
SfaNI	GCATC	3 cut(s)	264, 271, 1098
SinI	GGWCC	1 cut(s)	1071
SmiMI	CAYNNNNRTG	1 cut(s)	1020
SmlI	CTYRAG	2 cut(s)	489, 705
SmoI	CTYRAG	2 cut(s)	489, 705
Sse9I	AATT	7 cut(s)	77, 225, 508, 621, 634, 670, 886
SsiI	CCGC	4 cut(s)	358, 561, 710, 964
SspI	AATATT	1 cut(s)	1029
SspMI	CTAG	4 cut(s)	99, 355, 393, 1075
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	2 cut(s)	63, 910
TaaI	ACNGT	4 cut(s)	53, 96, 587, 1004
TaiI	ACGT	3 cut(s)	243, 426, 1067
TasI	AATT	7 cut(s)	77, 225, 508, 621, 634, 670, 886
TatI	WGTACW	4 cut(s)	91, 170, 546, 686
TauI	GCSGC	1 cut(s)	713
TfiI	GAWTC	3 cut(s)	181, 564, 915
Tru1I	TTAA	2 cut(s)	55, 207
Tru9I	TTAA	2 cut(s)	55, 207
TseFI	GTSAC	2 cut(s)	116, 476
TseI	GCWGC	2 cut(s)	514, 934
Tsp45I	GTSAC	2 cut(s)	116, 476
TspDTI	ATGAA	5 cut(s)	127, 144, 173, 315, 825
Tth111I	GACNNNGTC	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	1071
XapI	RAATTY	2 cut(s)	77, 508
XbaI	TCTAGA	1 cut(s)	98
XceI	RCATGY	1 cut(s)	561
XmiI	GTMKAC	1 cut(s)	815
XmnI	GAANNNNTTC	1 cut(s)	1114
XspI	CTAG	4 cut(s)	99, 355, 393, 1075
ZraI	GACGTC	1 cut(s)	241
ZrmI	AGTACT	1 cut(s)	688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.