Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004412

Physical Location & Seq

Genomic Coordinates Forward (+)

4063178 .. 4066290

Gene Structure 3113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0052300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCAGGCGGGGAAACTATATGCGCCTTATCTGAGGAAGTTTCTGAAGAAGCTTATTGCTGAAGTTGAGTTGAACCACGGTGATGTGATTGATGAGTTATACGAACATTATGCACATTACATGACTACTTTGAAGGAGAATGATTTGGAGAAAGATAATGCAAGGGTCTTCAAGTACATTTCATTTCTTTTTCCTGATGGTTGTCTTGAACTTTCAAGATGTTTGGAATCAAGGAAACTGATGGTTCAGCTGCAATGTTCTCTCAACATGCTTGAAGGAGATACTGGGTGTTCAGTTTGGCCATCAAGTCTTCTTTTGTCAGAGTACATACTTTCATTTCCAGAATTGTTCTCTAATAAGTCATGCTTTGAGGTCGGTTCGGGTGTTGGTTTGGTTGGCATCTGTCTTGCCCATGTGAAAGCATCCAAGGTCATACTAAGTGATGGTGACCTGTCAACTTTAGCAAACATGAAGCTTAATCTGGAACTGAACCACTTGAGCGTTGAAACTGATATGTCAGAAACTACTGAAGATCCAAATATGGTAAAATGCATTCATCTGCCATGGGAATCTGTGTCAGAGAAGGAGCTTCAAAACCACAAGCCAGATATAATTTTGGGTGCAGATGTAATATACGATCCAGTATGCCTCCCACATCTTGTTCGAGTACTTACCCTTCTTTTAAACCAGGCAAAACCGTATCCTGACCAGTGCAGTGGTAATCATCCGGGCTTTTCATTGGGAAGTAAAAGTAGTAGTGATGCTAAAGTCAATGTAACTCATGAAGCAAATGCTAACAATGGTGATGAATCCGATGCTTCTCTATGCAAAAGAACAGACAATGGTGCCTCAAATGTTGGATTGAAGAAGCGTCCGACAGCTTTAATTGCTTCTGTCATTCGCAATGTCGACACATTCAATAAGTTTCTCACTTTGCTAGACGAGGCCAACCTTACCATCGAAGACCTAACTGAATCGCTTAGACCTCAAAATTTTCTTCCTTACATGAAATCATATGATCACAGCACTATACGACTGTTTTCCATCTCATGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009956 GO:0009987 GO:0010467 GO:0010496 GO:0012505 GO:0016070 GO:0016073 GO:0016180 GO:0022622 GO:0031123 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0034470 GO:0034472 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0090057 GO:0090304 GO:0097708 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

352

Amino Acids

39.25

Weight (kDa)

5.41

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_16	PF10294	89 - 230	2.9e-20	Lysine methyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08800 AT3G08800 AT3G08800
fragaria_vesca	FvH4_6g10600 FvH4_6g10600 FvH4_6g10600 FvH4_6g10600 FvH4_6g10600
malus_domestica	MD04G1166800.v1.1
prunus_persica	Prupe.6G285000_v2.0.a1 Prupe.6G285000_v2.0.a1
pyrus_communis	pycom01g05880 pycom04g14820
rosa_chinensis	RchiOBHm_Chr3g0461591 RchiOBHm_Chr3g0461601
rosa_laevigata	RLG00000024915
rosa_multiflora	Rmu_co8098260.1_g000001 Rmu_sc0003578.1_g000001 Rmu_sc0032177.1_g000001 Rmu_sc0040016.1_g000001 Rmu_ssc0000193.1_g000007
rosa_roxburghii	Rroxscaffold_6G00418110 Rroxscaffold_6G00418480
rosa_rugosa	Rorug03G0052200 Rorug03G0052200 Rorug03G0052300 Rorug03G0052300
rosa_samantha	Rh3AG110400 Rh3BG113600 Rh3CG115500 Rh3DG115300
rosa_wichuraiana	Rw3G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	845
AccI	GTMKAC	1 cut(s)	909
AciI	CCGC	1 cut(s)	8
AclWI	GGATC	2 cut(s)	527, 632
AcoI	YGGCCR	1 cut(s)	299
AcsI	RAATTY	1 cut(s)	991
AcuI	CTGAAG	3 cut(s)	65, 81, 549
AfaI	GTAC	3 cut(s)	176, 326, 669
AjnI	CCWGG	1 cut(s)	687
AluBI	AGCT	5 cut(s)	52, 250, 475, 589, 881
AluI	AGCT	5 cut(s)	52, 250, 475, 589, 881
AlwI	GGATC	2 cut(s)	527, 632
AoxI	GGCC	2 cut(s)	299, 945
ApeKI	GCWGC	1 cut(s)	250
ApoI	RAATTY	1 cut(s)	991
AspLEI	GCGC	1 cut(s)	25
AsuC2I	CCSGG	1 cut(s)	729
AsuHPI	GGTGA	3 cut(s)	92, 458, 815
BalI	TGGCCA	1 cut(s)	301
BanI	GGYRCC	1 cut(s)	845
BarI	GAAGNNNNNNTAC	2 cut(s)	660, 692
BbsI	GAAGAC	3 cut(s)	160, 302, 969
BbvI	GCAGC	1 cut(s)	237
BccI	CCATC	6 cut(s)	191, 235, 310, 437, 965, 1052
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	1 cut(s)	689
BciVI	GTATCC	1 cut(s)	711
BclI	TGATCA	1 cut(s)	1018
BcnI	CCSGG	1 cut(s)	729
BfaI	CTAG	1 cut(s)	938
BfuI	GTATCC	1 cut(s)	711
BisI	GCNGC	1 cut(s)	251
BlsI	GCNGC	1 cut(s)	252
BmcAI	AGTACT	1 cut(s)	669
Bme1390I	CCNGG	2 cut(s)	689, 729
BmiI	GGNNCC	1 cut(s)	847
BmrFI	CCNGG	2 cut(s)	689, 729
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	4 cut(s)	408, 431, 751, 805
BmuI	ACTGGG	1 cut(s)	294
BpiI	GAAGAC	3 cut(s)	160, 302, 969
BpuEI	CTTGAG	1 cut(s)	517
BpuMI	CCSGG	1 cut(s)	729
BsaJI	CCNNGG	3 cut(s)	76, 426, 563
Bse1I	ACTGG	3 cut(s)	289, 641, 709
Bse3DI	GCAATG	2 cut(s)	260, 910
BseBI	CCWGG	1 cut(s)	689
BseDI	CCNNGG	3 cut(s)	76, 426, 563
BseGI	GGATG	2 cut(s)	422, 724
BseMI	GCAATG	2 cut(s)	260, 910
BseMII	CTCAG	1 cut(s)	23
BseNI	ACTGG	3 cut(s)	289, 641, 709
BseXI	GCAGC	1 cut(s)	237
BsgI	GTGCAG	2 cut(s)	642, 733
BshFI	GGCC	2 cut(s)	301, 947
BshNI	GGYRCC	1 cut(s)	845
BsiSI	CCGG	1 cut(s)	728
BsmI	GAATGC	1 cut(s)	552
BsnI	GGCC	2 cut(s)	301, 947
Bsp143I	GATC	3 cut(s)	532, 637, 1018
Bsp19I	CCATGG	1 cut(s)	563
BspACI	CCGC	1 cut(s)	8
BspANI	GGCC	2 cut(s)	301, 947
BspCNI	CTCAG	1 cut(s)	24
BspHI	TCATGA	1 cut(s)	781
BspLI	GGNNCC	1 cut(s)	847
BspPI	GGATC	2 cut(s)	527, 632
BspT107I	GGYRCC	1 cut(s)	845
BsrDI	GCAATG	2 cut(s)	260, 910
BsrI	ACTGG	3 cut(s)	289, 641, 709
BssECI	CCNNGG	3 cut(s)	76, 426, 563
BssMI	GATC	3 cut(s)	532, 637, 1018
BssT1I	CCWWGG	2 cut(s)	426, 563
Bst2UI	CCWGG	1 cut(s)	689
Bst4CI	ACNGT	3 cut(s)	80, 699, 1038
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	32, 437, 980
BstDSI	CCRYGG	2 cut(s)	76, 563
BstEII	GGTNACC	1 cut(s)	446
BstF5I	GGATG	2 cut(s)	422, 724
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	3 cut(s)	535, 640, 1021
BstMBI	GATC	3 cut(s)	532, 637, 1018
BstMWI	GCNNNNNNNGC	1 cut(s)	887
BstNI	CCWGG	1 cut(s)	689
BstNSI	RCATGY	1 cut(s)	271
BstPI	GGTNACC	1 cut(s)	446
BstSCI	CCNGG	2 cut(s)	687, 727
BstV1I	GCAGC	1 cut(s)	237
BstV2I	GAAGAC	3 cut(s)	160, 302, 969
BstX2I	RGATCY	1 cut(s)	532
BstXI	CCANNNNNNTGG	1 cut(s)	716
BstYI	RGATCY	1 cut(s)	532
BsuI	GTATCC	1 cut(s)	711
BsuRI	GGCC	2 cut(s)	301, 947
BtgI	CCRYGG	2 cut(s)	76, 563
BtsCI	GGATG	2 cut(s)	422, 724
BtsI	GCAGTG	1 cut(s)	721
BtsIMutI	CAGTG	2 cut(s)	716, 721
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	781
CfoI	GCGC	1 cut(s)	25
CseI	GACGC	1 cut(s)	860
Csp6I	GTAC	3 cut(s)	175, 325, 668
CviAII	CATG	9 cut(s)	121, 268, 363, 413, 469, 564, 782, 1006, 1050
CviJI	RGCY	9 cut(s)	52, 250, 301, 475, 589, 604, 732, 881, 947
CviKI_1	RGCY	9 cut(s)	52, 250, 301, 475, 589, 604, 732, 881, 947
CviQI	GTAC	3 cut(s)	175, 325, 668
DdeI	CTNAG	3 cut(s)	32, 437, 980
DpnI	GATC	3 cut(s)	534, 639, 1020
DpnII	GATC	3 cut(s)	532, 637, 1018
DraI	TTTAAA	1 cut(s)	684
EaeI	YGGCCR	1 cut(s)	299
Eco130I	CCWWGG	2 cut(s)	426, 563
Eco57I	CTGAAG	3 cut(s)	65, 81, 549
Eco91I	GGTNACC	1 cut(s)	446
EcoO65I	GGTNACC	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	687
EcoT14I	CCWWGG	2 cut(s)	426, 563
EcoT22I	ATGCAT	1 cut(s)	554
ErhI	CCWWGG	2 cut(s)	426, 563
FaeI	CATG	9 cut(s)	124, 271, 366, 416, 472, 567, 785, 1009, 1053
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FatI	CATG	9 cut(s)	120, 267, 362, 412, 468, 563, 781, 1005, 1049
FauNDI	CATATG	1 cut(s)	1015
FbaI	TGATCA	1 cut(s)	1018
FblI	GTMKAC	1 cut(s)	909
Fnu4HI	GCNGC	1 cut(s)	251
FokI	GGATG	2 cut(s)	409, 711
Fsp4HI	GCNGC	1 cut(s)	251
FspBI	CTAG	1 cut(s)	938
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	301, 947
HapII	CCGG	1 cut(s)	728
HgaI	GACGC	1 cut(s)	860
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	9 cut(s)	124, 271, 366, 416, 472, 567, 785, 1009, 1053
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	2 cut(s)	456, 910
HindII	GTYRAC	2 cut(s)	456, 910
HindIII	AAGCTT	2 cut(s)	50, 473
HinfI	GANTC	4 cut(s)	227, 569, 809, 974
HpaII	CCGG	1 cut(s)	728
HphI	GGTGA	3 cut(s)	92, 458, 815
Hpy166II	GTNNAC	2 cut(s)	456, 910
Hpy188I	TCNGA	7 cut(s)	33, 45, 322, 520, 580, 814, 876
Hpy188III	TCNNGA	7 cut(s)	194, 206, 216, 341, 482, 704, 782
Hpy8I	GTNNAC	2 cut(s)	456, 910
HpyAV	CCTTC	4 cut(s)	127, 269, 577, 686
HpyCH4III	ACNGT	3 cut(s)	80, 699, 1038
HpyCH4V	TGCA	8 cut(s)	4, 113, 161, 253, 552, 623, 714, 828
HpyF10VI	GCNNNNNNNGC	1 cut(s)	887
HpyF3I	CTNAG	3 cut(s)	32, 437, 980
Hsp92II	CATG	9 cut(s)	124, 271, 366, 416, 472, 567, 785, 1009, 1053
HspAI	GCGC	1 cut(s)	23
Ksp22I	TGATCA	1 cut(s)	1018
Kzo9I	GATC	3 cut(s)	532, 637, 1018
LmnI	GCTCC	1 cut(s)	586
Lsp1109I	GCAGC	1 cut(s)	237
LweI	GCATC	4 cut(s)	408, 431, 751, 805
MaeI	CTAG	1 cut(s)	938
MaeIII	GTNAC	2 cut(s)	446, 775
MalI	GATC	3 cut(s)	534, 639, 1020
MboI	GATC	3 cut(s)	532, 637, 1018
MboII	GAAGA	7 cut(s)	58, 160, 302, 542, 877, 974, 989
MflI	RGATCY	1 cut(s)	532
MlsI	TGGCCA	1 cut(s)	301
MluCI	AATT	4 cut(s)	344, 612, 885, 991
MluNI	TGGCCA	1 cut(s)	301
MmeI	TCCRAC	2 cut(s)	838, 899
MnlI	CCTC	6 cut(s)	27, 364, 659, 859, 937, 996
Mox20I	TGGCCA	1 cut(s)	301
Mph1103I	ATGCAT	1 cut(s)	554
MscI	TGGCCA	1 cut(s)	301
MseI	TTAA	3 cut(s)	477, 683, 884
MslI	CAYNNNNRTG	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	301
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	1 cut(s)	728
MspR9I	CCNGG	2 cut(s)	689, 729
Mva1269I	GAATGC	1 cut(s)	552
MvaI	CCWGG	1 cut(s)	689
MwoI	GCNNNNNNNGC	1 cut(s)	887
NciI	CCSGG	1 cut(s)	729
NcoI	CCATGG	1 cut(s)	563
NdeI	CATATG	1 cut(s)	1015
NdeII	GATC	3 cut(s)	532, 637, 1018
NlaIII	CATG	9 cut(s)	124, 271, 366, 416, 472, 567, 785, 1009, 1053
NlaIV	GGNNCC	1 cut(s)	847
NmuCI	GTSAC	1 cut(s)	446
NsiI	ATGCAT	1 cut(s)	554
NspI	RCATGY	1 cut(s)	271
PagI	TCATGA	1 cut(s)	781
PctI	GAATGC	1 cut(s)	552
PfeI	GAWTC	4 cut(s)	227, 569, 809, 974
PkrI	GCNGC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	687
PspEI	GGTNACC	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	687
PspN4I	GGNNCC	1 cut(s)	847
PsuI	RGATCY	1 cut(s)	532
PvuII	CAGCTG	1 cut(s)	250
RsaI	GTAC	3 cut(s)	176, 326, 669
RsaNI	GTAC	3 cut(s)	175, 325, 668
RseI	CAYNNNNRTG	1 cut(s)	81
SalI	GTCGAC	1 cut(s)	908
SaqAI	TTAA	3 cut(s)	477, 683, 884
SatI	GCNGC	1 cut(s)	251
Sau3AI	GATC	3 cut(s)	532, 637, 1018
ScaI	AGTACT	1 cut(s)	669
ScrFI	CCNGG	2 cut(s)	689, 729
SfaNI	GCATC	4 cut(s)	408, 431, 751, 805
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	1 cut(s)	496
SmoI	CTYRAG	1 cut(s)	496
Sse9I	AATT	4 cut(s)	344, 612, 885, 991
SsiI	CCGC	1 cut(s)	8
SspMI	CTAG	1 cut(s)	938
StyD4I	CCNGG	2 cut(s)	687, 727
StyI	CCWWGG	2 cut(s)	426, 563
TaaI	ACNGT	3 cut(s)	80, 699, 1038
TaqI	TCGA	3 cut(s)	664, 909, 960
TasI	AATT	4 cut(s)	344, 612, 885, 991
TatI	WGTACW	3 cut(s)	174, 324, 667
TfiI	GAWTC	4 cut(s)	227, 569, 809, 974
Tru1I	TTAA	3 cut(s)	477, 683, 884
Tru9I	TTAA	3 cut(s)	477, 683, 884
TscAI	CASTG	2 cut(s)	716, 721
TseFI	GTSAC	1 cut(s)	446
TseI	GCWGC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	446
TspDTI	ATGAA	8 cut(s)	171, 324, 485, 545, 726, 798, 822, 1022
TspRI	CASTG	2 cut(s)	716, 721
XapI	RAATTY	1 cut(s)	991
XceI	RCATGY	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	909
XspI	CTAG	1 cut(s)	938
ZrmI	AGTACT	1 cut(s)	669
Zsp2I	ATGCAT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.