Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8098260.1

Orthogroup ID

OG0004412

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 543

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8098260.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 542 bp

ctgagatccctaatcatcaacccctcaactccctcccccgcaatttcttcaatcctcgaaaccctaactcgctctctccaactcagtcgcgacccgctccgcactctcaagctcctctccgacctggccgcccgacacccccacctctccgccctagtcttccactccgtccgctccgactcgctcctctccaccgagtcgactcgcgtcgccgccgagtcactcgatgtcttggcttcgatccaagagcggaatcgagagctagcgccggctgttgaggaaatcgacgaccggttgttcgcctcgatttgttttagtccttctccggcgatacggccgtggcttctcagaaacgccgagaggttcggtgttaagccctacttgctatcaagcctgtttctagggtttacgaaggatccgtatccgaatgtgaggaaagctgcattggatggactcgttggtttgagtaagagcggcgttattgacgacggtgatatgatcagaggctgctacttccgcgccggtgagcttctaaacgacat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006810 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009956 GO:0009987 GO:0010467 GO:0010496 GO:0012505 GO:0016070 GO:0016073 GO:0016180 GO:0022622 GO:0031123 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0034470 GO:0034472 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0071704 GO:0090057 GO:0090304 GO:0097708 GO:0099402 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

180

Amino Acids

19.8

Weight (kDa)

7.03

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G08800 AT3G08800 AT3G08800
fragaria_vesca	FvH4_6g10600 FvH4_6g10600 FvH4_6g10600 FvH4_6g10600 FvH4_6g10600
malus_domestica	MD04G1166800.v1.1
prunus_persica	Prupe.6G285000_v2.0.a1 Prupe.6G285000_v2.0.a1
pyrus_communis	pycom01g05880 pycom04g14820
rosa_chinensis	RchiOBHm_Chr3g0461591 RchiOBHm_Chr3g0461601
rosa_laevigata	RLG00000024915
rosa_multiflora	Rmu_co8098260.1_g000001 Rmu_sc0003578.1_g000001 Rmu_sc0032177.1_g000001 Rmu_sc0040016.1_g000001 Rmu_ssc0000193.1_g000007
rosa_roxburghii	Rroxscaffold_6G00418110 Rroxscaffold_6G00418480
rosa_rugosa	Rorug03G0052200 Rorug03G0052200 Rorug03G0052300 Rorug03G0052300
rosa_samantha	Rh3AG110400 Rh3BG113600 Rh3CG115500 Rh3DG115300
rosa_wichuraiana	Rw3G009340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	4 cut(s)	97, 174, 250, 474
AccI	GTMKAC	1 cut(s)	200
AccII	CGCG	3 cut(s)	90, 207, 519
AclWI	GGATC	3 cut(s)	235, 410, 423
AcoI	YGGCCR	2 cut(s)	126, 335
AgeI	ACCGGT	1 cut(s)	291
AgsI	TTSAA	1 cut(s)	51
AjnI	CCWGG	1 cut(s)	123
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AluBI	AGCT	4 cut(s)	112, 262, 440, 529
AluI	AGCT	4 cut(s)	112, 262, 440, 529
AlwI	GGATC	3 cut(s)	235, 410, 423
AlwNI	CAGNNNCTG	1 cut(s)	507
AoxI	GGCC	2 cut(s)	126, 335
ApeKI	GCWGC	2 cut(s)	440, 507
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
AsiGI	ACCGGT	1 cut(s)	291
AspLEI	GCGC	2 cut(s)	268, 521
AsuHPI	GGTGA	2 cut(s)	503, 536
AsuNHI	GCTAGC	1 cut(s)	262
BaeI	ACNNNNGTAYC	2 cut(s)	323, 356
BamHI	GGATCC	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	151
BbvI	GCAGC	2 cut(s)	427, 494
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	2 cut(s)	322, 350
BciT130I	CCWGG	1 cut(s)	125
BciVI	GTATCC	1 cut(s)	432
BclI	TGATCA	1 cut(s)	498
BfaI	CTAG	3 cut(s)	155, 263, 401
BfoI	RGCGCY	1 cut(s)	269
BfuI	GTATCC	1 cut(s)	432
BisI	GCNGC	5 cut(s)	129, 213, 441, 475, 508
BlsI	GCNGC	5 cut(s)	130, 214, 442, 476, 509
Bme1390I	CCNGG	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	417
BmrFI	CCNGG	1 cut(s)	125
BmtI	GCTAGC	1 cut(s)	266
BoxI	GACNNNNGTC	1 cut(s)	206
BpiI	GAAGAC	1 cut(s)	151
BpuEI	CTTGAG	1 cut(s)	92
BsaBI	GATNNNNATC	1 cut(s)	420
BsaJI	CCNNGG	1 cut(s)	338
BsaWI	WCCGGW	1 cut(s)	291
Bse118I	RCCGGY	3 cut(s)	268, 291, 521
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	454
BseJI	GATNNNNATC	1 cut(s)	420
BseMII	CTCAG	2 cut(s)	97, 361
BseRI	GAGGAG	2 cut(s)	104, 176
BseX3I	CGGCCG	1 cut(s)	335
BseXI	GCAGC	2 cut(s)	427, 494
Bsh1236I	CGCG	3 cut(s)	90, 207, 519
Bsh1285I	CGRYCG	2 cut(s)	292, 338
BshFI	GGCC	2 cut(s)	128, 337
BshTI	ACCGGT	1 cut(s)	291
BsiEI	CGRYCG	2 cut(s)	292, 338
BsiSI	CCGG	4 cut(s)	269, 292, 326, 522
BsnI	GGCC	2 cut(s)	128, 337
Bsp143I	GATC	4 cut(s)	5, 240, 415, 498
Bsp68I	TCGCGA	1 cut(s)	90
BspANI	GGCC	2 cut(s)	128, 337
BspCNI	CTCAG	2 cut(s)	96, 360
BspFNI	CGCG	3 cut(s)	90, 207, 519
BspLI	GGNNCC	1 cut(s)	417
BspOI	GCTAGC	1 cut(s)	266
BspPI	GGATC	3 cut(s)	235, 410, 423
BsrBI	CCGCTC	4 cut(s)	97, 174, 250, 474
BsrFI	RCCGGY	3 cut(s)	268, 291, 521
BssAI	RCCGGY	3 cut(s)	268, 291, 521
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	4 cut(s)	5, 240, 415, 498
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	264, 270
BstDEI	CTNAG	3 cut(s)	2, 83, 347
BstDSI	CCRYGG	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	454
BstFNI	CGCG	3 cut(s)	90, 207, 519
BstH2I	RGCGCY	1 cut(s)	269
BstHHI	GCGC	2 cut(s)	268, 521
BstKTI	GATC	4 cut(s)	8, 243, 418, 501
BstMBI	GATC	4 cut(s)	5, 240, 415, 498
BstMCI	CGRYCG	2 cut(s)	292, 338
BstMWI	GCNNNNNNNGC	2 cut(s)	382, 516
BstNI	CCWGG	1 cut(s)	125
BstPAI	GACNNNNGTC	1 cut(s)	206
BstSCI	CCNGG	1 cut(s)	123
BstUI	CGCG	3 cut(s)	90, 207, 519
BstV1I	GCAGC	2 cut(s)	427, 494
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	2 cut(s)	5, 415
BstYI	RGATCY	2 cut(s)	5, 415
BstZI	CGGCCG	1 cut(s)	335
BsuI	GTATCC	1 cut(s)	432
BsuRI	GGCC	2 cut(s)	128, 337
BtgI	CCRYGG	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	454
BtuMI	TCGCGA	1 cut(s)	90
Cac8I	GCNNGC	2 cut(s)	264, 270
CaiI	CAGNNNCTG	1 cut(s)	507
CfoI	GCGC	2 cut(s)	268, 521
Cfr10I	RCCGGY	3 cut(s)	268, 291, 521
CseI	GACGC	1 cut(s)	196
CspAI	ACCGGT	1 cut(s)	291
DdeI	CTNAG	3 cut(s)	2, 83, 347
DpnI	GATC	4 cut(s)	7, 242, 417, 500
DpnII	GATC	4 cut(s)	5, 240, 415, 498
EaeI	YGGCCR	2 cut(s)	126, 335
EagI	CGGCCG	1 cut(s)	335
EciI	GGCGGA	1 cut(s)	139
EclXI	CGGCCG	1 cut(s)	335
Eco52I	CGGCCG	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	123
FaiI	YATR	1 cut(s)	497
FalI	AAGNNNNNCTT	2 cut(s)	365, 397
FauI	CCCGC	2 cut(s)	46, 102
FbaI	TGATCA	1 cut(s)	498
FblI	GTMKAC	1 cut(s)	200
Fnu4HI	GCNGC	5 cut(s)	129, 213, 441, 475, 508
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	5 cut(s)	129, 213, 441, 475, 508
FspBI	CTAG	3 cut(s)	155, 263, 401
GlaI	GCGC	2 cut(s)	267, 520
GluI	GCNGC	5 cut(s)	129, 213, 441, 475, 508
HaeII	RGCGCY	1 cut(s)	269
HaeIII	GGCC	2 cut(s)	128, 337
HapII	CCGG	4 cut(s)	269, 292, 326, 522
HgaI	GACGC	1 cut(s)	196
HhaI	GCGC	2 cut(s)	268, 521
Hin6I	GCGC	2 cut(s)	266, 519
HinP1I	GCGC	2 cut(s)	266, 519
HincII	GTYRAC	1 cut(s)	201
HindII	GTYRAC	1 cut(s)	201
HinfI	GANTC	6 cut(s)	179, 197, 202, 218, 253, 453
HpaII	CCGG	4 cut(s)	269, 292, 326, 522
HphI	GGTGA	2 cut(s)	503, 536
Hpy166II	GTNNAC	2 cut(s)	201, 408
Hpy188I	TCNGA	5 cut(s)	121, 178, 350, 426, 503
Hpy188III	TCNNGA	2 cut(s)	89, 257
Hpy8I	GTNNAC	2 cut(s)	201, 408
Hpy99I	CGWCG	3 cut(s)	212, 290, 491
HpyAV	CCTTC	2 cut(s)	330, 406
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4V	TGCA	1 cut(s)	443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	382, 516
HpyF3I	CTNAG	3 cut(s)	2, 83, 347
HspAI	GCGC	2 cut(s)	266, 519
KroI	GCCGGC	1 cut(s)	268
KroNI	GCCGGC	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	498
Kzo9I	GATC	4 cut(s)	5, 240, 415, 498
LmnI	GCTCC	4 cut(s)	102, 117, 179, 189
LpnPI	CCDG	7 cut(s)	110, 137, 282, 305, 339, 407, 535
Lsp1109I	GCAGC	2 cut(s)	427, 494
MaeI	CTAG	3 cut(s)	155, 263, 401
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	4 cut(s)	7, 242, 417, 500
MbiI	CCGCTC	4 cut(s)	97, 174, 250, 474
MboI	GATC	4 cut(s)	5, 240, 415, 498
MboII	GAAGA	2 cut(s)	39, 151
MflI	RGATCY	2 cut(s)	5, 415
MluCI	AATT	1 cut(s)	42
MlyI	GAGTC	5 cut(s)	173, 196, 206, 227, 447
MmeI	TCCRAC	3 cut(s)	103, 144, 201
MroNI	GCCGGC	1 cut(s)	268
MseI	TTAA	1 cut(s)	372
MspI	CCGG	4 cut(s)	269, 292, 326, 522
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MvnI	CGCG	3 cut(s)	90, 207, 519
MwoI	GCNNNNNNNGC	2 cut(s)	382, 516
NaeI	GCCGGC	1 cut(s)	270
NdeII	GATC	4 cut(s)	5, 240, 415, 498
NgoMIV	GCCGGC	1 cut(s)	268
NheI	GCTAGC	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	417
NmeAIII	GCCGAG	2 cut(s)	241, 382
NmuCI	GTSAC	1 cut(s)	219
NruI	TCGCGA	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	416
PdiI	GCCGGC	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	253
PinAI	ACCGGT	1 cut(s)	291
PkrI	GCNGC	5 cut(s)	130, 214, 442, 476, 509
PleI	GAGTC	5 cut(s)	173, 196, 205, 226, 447
PpsI	GAGTC	5 cut(s)	173, 196, 205, 226, 447
PshAI	GACNNNNGTC	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	417
PstNI	CAGNNNCTG	1 cut(s)	507
PsuI	RGATCY	2 cut(s)	5, 415
RruI	TCGCGA	1 cut(s)	90
SalI	GTCGAC	1 cut(s)	199
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	5 cut(s)	129, 213, 441, 475, 508
Sau3AI	GATC	4 cut(s)	5, 240, 415, 498
SchI	GAGTC	5 cut(s)	173, 196, 206, 227, 447
ScrFI	CCNGG	1 cut(s)	125
SetI	ASST	7 cut(s)	114, 126, 147, 264, 365, 442, 531
SgrAI	CRCCGGYG	1 cut(s)	521
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	1 cut(s)	42
SspMI	CTAG	3 cut(s)	155, 263, 401
StyD4I	CCNGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	491
TaqI	TCGA	7 cut(s)	57, 200, 225, 239, 256, 285, 305
TasI	AATT	1 cut(s)	42
TauI	GCSGC	3 cut(s)	131, 215, 477
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	2 cut(s)	440, 507
Tsp45I	GTSAC	1 cut(s)	219
TspGWI	ACGGA	2 cut(s)	157, 408
XmiI	GTMKAC	1 cut(s)	200
XspI	CTAG	3 cut(s)	155, 263, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.