RchiOBHm_Chr3g0485241
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
31870720 .. 31876813
6094 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44987

Sequence Viewer

Length: 1632 bp
ATGCAAGCGTCAACTTATGGTTCGATCAGAGAGAAGTTGGTTTTCGGGGTCCAAGTCAAACAGCAAAGGAAGGTGTTGGGGTCAAGTACAGGGTTAAAGAATCTGTGTATGACAGATAAGGCCACTGGCTTTGGTGGATTGAAGCTCACTTCTGCGGCTATGGGAGCCAACCTTGGACGTCTTGATGGGATTTCCATGACTTCCTTGAAACCCAGATCAGTCAAGGCTCACGCTGCTTCTGACGCAGATGGAGATGTTGAGAATCTTGTTCCTCCCAAGCCTCAGGTCAAATCTTCTGGAATAGTGTTGCCATTTGTTGGTGTTGCCTGTCTTGGAGCCATTTTATTTGGTTATCATCTCGGGGTGGTAAATGGTGCTCTTGAGTACCTGTCGAAGGATCTTGGTATTACTGAAAACGTTGCATTAAAAGGGTGGGTGGTTAGCACACTTCTAGCTGGTGCCACAGTTGGATCTTTCACTGGTGGAACATTGGCCGACAAGTTTGGGAGAACTAGAACTTTTCAACTTGATGCAATTCCACTAACGATTGGAGCATTTTTATGTGCCACAGCACAGAGTGTGGAGCAAATGATAGTTGGCCGCTTACTTGCTGGCATTGGAATCGGCATCTCATCGGCTATTGTCCCACTTTACATTTCTGAGATCTCCCCAACTGAAATTCGGGGCGCACTTGGATCTGTAAACCAGCTTTTTATATGTCTTGGAATCCTTGGAGCACTGGTGGCTGGATTACCTTTATCAGCAAATCCGTTATGGTGGAGGACAATGTTTGGTATTGCAATAGTTCCCTCTGTTCTATTGGCTTTAGGAATGGCTGTTTCACCCGAAAGTCCTAGATGGCTCTTACAGCAAGGAAAAACTTCTCAGGCTGAAAAGGTTATAAAAACATTATACGGAAAAGAGAGAGTAACTGAGGTAATGCATGACTTAACATCAACAAGTCATGGATCTGCTGAACCCGAAGCAGGCTGGTTTGATCTGTTTAGTAGCCGCTATTGGAAAGTTGTTAGTGTTGGTGCGGCACTTTTCTTGTTCCAACAGTTAGCTGGGATAAATGCTGTGGTTTATTATTCCACTTCTGTCTTCCGCAGTGCTGGCATAACATCAGATGTTGCAGCAAGTGCTCTCGTTGGAGCAGCAAATGTCTTTGGCACAGCTGTTGCATCATCACTGATGGACAGACAAGGAAGGAAAAGTCTTCTCCTCATTAGTTTTGGAGGAATGGCTGCTTCAATGTTGCTGCTTGCTTTGTCTTTCACTTGGAGTGTTTTGGCTCCATATTCTGGCACCCTGGCTGTCGCTGGGACTGTTCTCTATGTATTGTCCTTTTCGCTTGGCGCTGGTCCTGTGCCTGCTCTTCTTCTGCCAGAGATATTTGCTTCAAGAATCAGAGCAAAAGCAGTTTCTTTGTCATTGGGCATGCACTGGATATCAAACTTCGTCATAGGCCTATATTTCTTGAGCTTTGTAACCAAGTTCGGGATCAGCTCAGTGTATCTGGGATTCTCGGCTGTTTGTCTGCTTGCGGTCTTGTACATAGCTGGTAATGTTGTTGAAACTAAAGGGCGATCTTTGGAGGACATAGAGCGTGCCCTTAGCGTTCCAACCTGA

Protein Analysis

543

Amino Acids

56.91

Weight (kDa)

9.36

Isoelectric Point (pI)

28.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 108 - 538 2.6e-107 Sugar (and other) transporter
MFS_1 PF07690 110 - 452 6.5e-27 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 902
AatII GACGTC 1 cut(s) 181
AccB1I GGYRCC 2 cut(s) 458, 1307
AccB7I CCANNNNNTGG 2 cut(s) 317, 1304
AciI CCGC 6 cut(s) 155, 601, 1012, 1040, 1108, 1547
AclI AACGTT 1 cut(s) 417
AclWI GGATC 5 cut(s) 405, 478, 703, 976, 1511
AcoI YGGCCR 2 cut(s) 492, 598
AcsI RAATTY 1 cut(s) 678
AcyI GRCGYC 1 cut(s) 178
AdeI CACNNNGTG 1 cut(s) 578
AfaI GTAC 3 cut(s) 88, 386, 1556
AfiI CCNNNNNNNGG 5 cut(s) 317, 394, 986, 1304, 1500
AgsI TTSAA 6 cut(s) 142, 208, 524, 1254, 1404, 1577
AjnI CCWGG 1 cut(s) 1311
AluBI AGCT 8 cut(s) 145, 455, 709, 1067, 1178, 1485, 1509, 1562
AluI AGCT 8 cut(s) 145, 455, 709, 1067, 1178, 1485, 1509, 1562
Alw21I GWGCWC 3 cut(s) 379, 739, 1147
AlwI GGATC 5 cut(s) 405, 478, 703, 976, 1511
Ama87I CYCGRG 1 cut(s) 359
AoxI GGCC 4 cut(s) 120, 492, 598, 1468
ApeKI GCWGC 5 cut(s) 233, 1136, 1157, 1247, 1261
ApoI RAATTY 1 cut(s) 678
Asp700I GAANNNNTTC 1 cut(s) 880
AspLEI GCGC 2 cut(s) 689, 1361
AspS9I GGNCC 2 cut(s) 49, 1364
AsuHPI GGTGA 1 cut(s) 834
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 2 cut(s) 49, 1364
AxyI CCTNAGG 1 cut(s) 282
BaeGI GKGCMC 1 cut(s) 1615
BanI GGYRCC 2 cut(s) 458, 1307
BbsI GAAGAC 2 cut(s) 1096, 1211
Bbv12I GWGCWC 3 cut(s) 379, 739, 1147
BbvI GCAGC 5 cut(s) 220, 1148, 1169, 1234, 1248
BccI CCATC 4 cut(s) 179, 242, 852, 1189
BcgI CGANNNNNNTGC 2 cut(s) 604, 638
BciT130I CCWGG 1 cut(s) 1313
BfaI CTAG 3 cut(s) 452, 513, 855
BfoI RGCGCY 1 cut(s) 1362
BglII AGATCT 1 cut(s) 663
BisI GCNGC 9 cut(s) 156, 234, 601, 1012, 1041, 1137, 1158, 1248, 1262
BlsI GCNGC 9 cut(s) 157, 235, 602, 1013, 1042, 1138, 1159, 1249, 1263
Bme1390I CCNGG 1 cut(s) 1313
Bme18I GGWCC 2 cut(s) 49, 1364
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 2 cut(s) 49, 1364
BmiI GGNNCC 6 cut(s) 50, 166, 337, 460, 1296, 1309
BmrFI CCNGG 1 cut(s) 1313
BmsI GCATC 3 cut(s) 520, 636, 1193
BpiI GAAGAC 2 cut(s) 1096, 1211
Bpu10I CCTNAGC 1 cut(s) 1616
BpuEI CTTGAG 2 cut(s) 401, 1501
BsaHI GRCGYC 1 cut(s) 178
BsaJI CCNNGG 3 cut(s) 172, 730, 1311
BsaXI ACNNNNNCTCC 2 cut(s) 726, 756
Bsc4I CCNNNNNNNGG 5 cut(s) 317, 394, 986, 1304, 1500
Bse1I ACTGG 4 cut(s) 130, 484, 744, 1451
Bse21I CCTNAGG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 1313
BseDI CCNNGG 3 cut(s) 172, 730, 1311
BseLI CCNNNNNNNGG 5 cut(s) 317, 394, 986, 1304, 1500
BseMII CTCAG 5 cut(s) 296, 651, 899, 924, 1524
BseNI ACTGG 4 cut(s) 130, 484, 744, 1451
BseRI GAGGAG 1 cut(s) 1214
BseSI GKGCMC 1 cut(s) 1615
BseXI GCAGC 5 cut(s) 220, 1148, 1169, 1234, 1248
BseYI CCCAGC 2 cut(s) 1067, 1322
BshFI GGCC 4 cut(s) 122, 494, 600, 1470
BshNI GGYRCC 2 cut(s) 458, 1307
BsiHKAI GWGCWC 3 cut(s) 379, 739, 1147
BsiHKCI CYCGRG 1 cut(s) 359
BslFI GGGAC 2 cut(s) 629, 1339
BslI CCNNNNNNNGG 5 cut(s) 317, 394, 986, 1304, 1500
BsmFI GGGAC 2 cut(s) 629, 1339
BsnI GGCC 4 cut(s) 122, 494, 600, 1470
BsoBI CYCGRG 1 cut(s) 359
Bsp1286I GDGCHC 4 cut(s) 379, 739, 1147, 1615
Bsp1407I TGTACA 1 cut(s) 1554
BspACI CCGC 6 cut(s) 155, 601, 1012, 1040, 1108, 1547
BspANI GGCC 4 cut(s) 122, 494, 600, 1470
BspCNI CTCAG 5 cut(s) 295, 652, 898, 925, 1523
BspLI GGNNCC 6 cut(s) 50, 166, 337, 460, 1296, 1309
BspPI GGATC 5 cut(s) 405, 478, 703, 976, 1511
BspQI GCTCTTC 1 cut(s) 1383
BspT107I GGYRCC 2 cut(s) 458, 1307
BsrGI TGTACA 1 cut(s) 1554
BsrI ACTGG 4 cut(s) 130, 484, 744, 1451
BssECI CCNNGG 3 cut(s) 172, 730, 1311
BssNI GRCGYC 1 cut(s) 178
BssT1I CCWWGG 2 cut(s) 172, 730
Bst2UI CCWGG 1 cut(s) 1313
Bst4CI ACNGT 3 cut(s) 466, 1062, 1330
Bst6I CTCTTC 1 cut(s) 1383
BstACI GRCGYC 1 cut(s) 178
BstAPI GCANNNNNTGC 1 cut(s) 1142
BstAUI TGTACA 1 cut(s) 1554
BstC8I GCNNGC 9 cut(s) 6, 613, 988, 1117, 1266, 1374, 1442, 1545, 1611
BstDEI CTNAG 6 cut(s) 282, 660, 885, 933, 1510, 1616
BstENI CCTNNNNNAGG 1 cut(s) 392
BstH2I RGCGCY 1 cut(s) 1362
BstHHI GCGC 2 cut(s) 689, 1361
BstMWI GCNNNNNNNGC 7 cut(s) 164, 233, 242, 743, 868, 1116, 1142
BstNI CCWGG 1 cut(s) 1313
BstNSI RCATGY 1 cut(s) 1444
BstSCI CCNGG 1 cut(s) 1311
BstSLI GKGCMC 1 cut(s) 1615
BstV1I GCAGC 5 cut(s) 220, 1148, 1169, 1234, 1248
BstV2I GAAGAC 2 cut(s) 1096, 1211
BstX2I RGATCY 5 cut(s) 397, 470, 663, 695, 968
BstYI RGATCY 5 cut(s) 397, 470, 663, 695, 968
Bsu36I CCTNAGG 1 cut(s) 282
BsuRI GGCC 4 cut(s) 122, 494, 600, 1470
BtsI GCAGTG 1 cut(s) 1117
BtsIMutI CAGTG 7 cut(s) 123, 477, 737, 1117, 1190, 1444, 1518
Cac8I GCNNGC 9 cut(s) 6, 613, 988, 1117, 1266, 1374, 1442, 1545, 1611
CfoI GCGC 2 cut(s) 689, 1361
Cfr13I GGNCC 2 cut(s) 49, 1364
CseI GACGC 1 cut(s) 251
Csp6I GTAC 3 cut(s) 87, 385, 1555
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 4 cut(s) 196, 944, 965, 1441
CviQI GTAC 3 cut(s) 87, 385, 1555
DdeI CTNAG 6 cut(s) 282, 660, 885, 933, 1510, 1616
DraIII CACNNNGTG 1 cut(s) 578
EaeI YGGCCR 2 cut(s) 492, 598
Eam1104I CTCTTC 1 cut(s) 1383
EarI CTCTTC 1 cut(s) 1383
Eco130I CCWWGG 2 cut(s) 172, 730
Eco147I AGGCCT 1 cut(s) 1470
Eco32I GATATC 1 cut(s) 1452
Eco47I GGWCC 2 cut(s) 49, 1364
Eco81I CCTNAGG 1 cut(s) 282
Eco88I CYCGRG 1 cut(s) 359
EcoNI CCTNNNNNAGG 1 cut(s) 392
EcoRII CCWGG 1 cut(s) 1311
EcoRV GATATC 1 cut(s) 1452
EcoT14I CCWWGG 2 cut(s) 172, 730
EcoT22I ATGCAT 1 cut(s) 945
ErhI CCWWGG 2 cut(s) 172, 730
FaeI CATG 4 cut(s) 199, 947, 968, 1444
FaqI GGGAC 2 cut(s) 629, 1339
FatI CATG 4 cut(s) 195, 943, 964, 1440
Fnu4HI GCNGC 9 cut(s) 156, 234, 601, 1012, 1041, 1137, 1158, 1248, 1262
Fsp4HI GCNGC 9 cut(s) 156, 234, 601, 1012, 1041, 1137, 1158, 1248, 1262
FspBI CTAG 3 cut(s) 452, 513, 855
GlaI GCGC 2 cut(s) 688, 1360
GluI GCNGC 9 cut(s) 156, 234, 601, 1012, 1041, 1137, 1158, 1248, 1262
GsaI CCCAGC 2 cut(s) 1071, 1326
HaeII RGCGCY 1 cut(s) 1362
HaeIII GGCC 4 cut(s) 122, 494, 600, 1470
HgaI GACGC 1 cut(s) 251
HhaI GCGC 2 cut(s) 689, 1361
Hin1I GRCGYC 1 cut(s) 178
Hin1II CATG 4 cut(s) 199, 947, 968, 1444
Hin6I GCGC 2 cut(s) 687, 1359
HinP1I GCGC 2 cut(s) 687, 1359
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 6 cut(s) 100, 262, 621, 726, 1407, 1524
HphI GGTGA 1 cut(s) 834
Hpy166II GTNNAC 2 cut(s) 12, 703
Hpy188I TCNGA 5 cut(s) 29, 241, 661, 1129, 1412
Hpy188III TCNNGA 6 cut(s) 182, 297, 380, 1404, 1480, 1501
Hpy8I GTNNAC 2 cut(s) 12, 703
HpyAV CCTTC 3 cut(s) 64, 388, 1203
HpyCH4III ACNGT 3 cut(s) 466, 1062, 1330
HpyCH4IV ACGT 2 cut(s) 178, 417
HpyCH4V TGCA 8 cut(s) 4, 422, 533, 800, 943, 1136, 1184, 1444
HpyF10VI GCNNNNNNNGC 7 cut(s) 164, 233, 242, 743, 868, 1116, 1142
HpyF3I CTNAG 6 cut(s) 282, 660, 885, 933, 1510, 1616
HpySE526I ACGT 2 cut(s) 178, 417
Hsp92I GRCGYC 1 cut(s) 178
Hsp92II CATG 4 cut(s) 199, 947, 968, 1444
HspAI GCGC 2 cut(s) 687, 1359
LguI GCTCTTC 1 cut(s) 1383
LmnI GCTCC 7 cut(s) 164, 335, 551, 583, 734, 1154, 1300
Lsp1109I GCAGC 5 cut(s) 220, 1148, 1169, 1234, 1248
LweI GCATC 3 cut(s) 520, 636, 1193
MaeI CTAG 3 cut(s) 452, 513, 855
MaeII ACGT 2 cut(s) 178, 417
MaeIII GTNAC 2 cut(s) 928, 1489
MboII GAAGA 5 cut(s) 285, 1096, 1211, 1370, 1373
MflI RGATCY 5 cut(s) 397, 470, 663, 695, 968
MhlI GDGCHC 4 cut(s) 379, 739, 1147, 1615
MluCI AATT 2 cut(s) 534, 678
MmeI TCCRAC 3 cut(s) 448, 1081, 1132
MnlI CCTC 8 cut(s) 282, 291, 774, 820, 928, 1232, 1235, 1591
Mph1103I ATGCAT 1 cut(s) 945
MroXI GAANNNNTTC 1 cut(s) 880
MseI TTAA 3 cut(s) 95, 425, 950
MslI CAYNNNNRTG 1 cut(s) 559
MspA1I CMGCKG 1 cut(s) 1178
MspR9I CCNGG 1 cut(s) 1313
MvaI CCWGG 1 cut(s) 1313
MwoI GCNNNNNNNGC 7 cut(s) 164, 233, 242, 743, 868, 1116, 1142
NlaIII CATG 4 cut(s) 199, 947, 968, 1444
NlaIV GGNNCC 6 cut(s) 50, 166, 337, 460, 1296, 1309
NmeAIII GCCGAG 1 cut(s) 1508
NsiI ATGCAT 1 cut(s) 945
NspI RCATGY 1 cut(s) 1444
PaeI GCATGC 1 cut(s) 1444
PceI AGGCCT 1 cut(s) 1470
PciSI GCTCTTC 1 cut(s) 1383
PdmI GAANNNNTTC 1 cut(s) 880
PfeI GAWTC 6 cut(s) 100, 262, 621, 726, 1407, 1524
PflMI CCANNNNNTGG 2 cut(s) 317, 1304
PkrI GCNGC 9 cut(s) 157, 235, 602, 1013, 1042, 1138, 1159, 1249, 1263
PsiI TTATAA 1 cut(s) 902
Psp1406I AACGTT 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 1311
PspFI CCCAGC 2 cut(s) 1067, 1322
PspGI CCWGG 1 cut(s) 1311
PspN4I GGNNCC 6 cut(s) 50, 166, 337, 460, 1296, 1309
PspPI GGNCC 2 cut(s) 49, 1364
PsuI RGATCY 5 cut(s) 397, 470, 663, 695, 968
PvuII CAGCTG 1 cut(s) 1178
RsaI GTAC 3 cut(s) 88, 386, 1556
RsaNI GTAC 3 cut(s) 87, 385, 1555
RseI CAYNNNNRTG 1 cut(s) 559
SapI GCTCTTC 1 cut(s) 1383
SaqAI TTAA 3 cut(s) 95, 425, 950
SatI GCNGC 9 cut(s) 156, 234, 601, 1012, 1041, 1137, 1158, 1248, 1262
Sau96I GGNCC 2 cut(s) 49, 1364
ScrFI CCNGG 1 cut(s) 1313
SduI GDGCHC 4 cut(s) 379, 739, 1147, 1615
SfaNI GCATC 3 cut(s) 520, 636, 1193
SinI GGWCC 2 cut(s) 49, 1364
SmiMI CAYNNNNRTG 1 cut(s) 559
SmlI CTYRAG 2 cut(s) 380, 1480
SmoI CTYRAG 2 cut(s) 380, 1480
SphI GCATGC 1 cut(s) 1444
Sse9I AATT 2 cut(s) 534, 678
SseBI AGGCCT 1 cut(s) 1470
SsiI CCGC 6 cut(s) 155, 601, 1012, 1040, 1108, 1547
SspMI CTAG 3 cut(s) 452, 513, 855
StuI AGGCCT 1 cut(s) 1470
StyD4I CCNGG 1 cut(s) 1311
StyI CCWWGG 2 cut(s) 172, 730
TaaI ACNGT 3 cut(s) 466, 1062, 1330
TaiI ACGT 2 cut(s) 181, 420
TaqI TCGA 2 cut(s) 23, 392
TasI AATT 2 cut(s) 534, 678
TatI WGTACW 2 cut(s) 86, 1554
TauI GCSGC 4 cut(s) 158, 603, 1014, 1043
TfiI GAWTC 6 cut(s) 100, 262, 621, 726, 1407, 1524
Tru1I TTAA 3 cut(s) 95, 425, 950
Tru9I TTAA 3 cut(s) 95, 425, 950
TscAI CASTG 7 cut(s) 130, 484, 744, 1117, 1197, 1451, 1518
TseI GCWGC 5 cut(s) 233, 1136, 1157, 1247, 1261
TspGWI ACGGA 2 cut(s) 759, 930
TspRI CASTG 7 cut(s) 130, 484, 744, 1117, 1197, 1451, 1518
Van91I CCANNNNNTGG 2 cut(s) 317, 1304
VpaK11BI GGWCC 2 cut(s) 49, 1364
XagI CCTNNNNNAGG 1 cut(s) 392
XapI RAATTY 1 cut(s) 678
XceI RCATGY 1 cut(s) 1444
XcmI CCANNNNNNNNNTGG 1 cut(s) 1064
XmnI GAANNNNTTC 1 cut(s) 880
XspI CTAG 3 cut(s) 452, 513, 855
ZraI GACGTC 1 cut(s) 179
Zsp2I ATGCAT 1 cut(s) 945
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.