Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038513.1

Orthogroup ID

OG0007158

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1041

Gene Structure 1041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038513.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 403 bp

tggcataacatcagatgttgcagcaagtgctctcgttggagcagcaaatgtctttggcacagctgttgcatcatcactgatggacagacaaggaaggaaaagtcttcttctcattagttttggaggaatggctgcttcaatgttgctgcttgctttgtctttcacttggagtgttttggctccatattctggcaccctggctgtcgctgggactgttctctatgtattgtccttttcgcttggcgctggtcctgtgcctgctcttcttctgccagagatatttgcttcaagaatcagagcaaaagcagtttctttgtcattgggcatgcactgggtaagtagctatagaaaatgcatattttttttgaagtgggatggtacccttctaatcaatatcttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

133

Amino Acids

13.91

Weight (kDa)

9.89

Isoelectric Point (pI)

27.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16150 AT5G16150 AT5G16150
fragaria_vesca	FvH4_1g25970 FvH4_1g25970 FvH4_1g25970
malus_domestica	MD09G1254500.v1.1 MD17G1246900.v1.1
prunus_persica	Prupe.3G144600_v2.0.a1
pyrus_communis	pycom09g17020 pycom17g24850
rosa_chinensis	RchiOBHm_Chr3g0485241
rosa_laevigata	RLG00000023163
rosa_multiflora	Rmu_sc0005072.1_g000021 Rmu_sc0024791.1_g000001 Rmu_sc0038513.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397150
rosa_rugosa	Rorug03G0217000 Rorug03G0217100
rosa_samantha	Rh3AG266500 Rh3BG302200 Rh3CG300200 Rh3DG296400
rosa_wichuraiana	Rw0G000470 Rw3G023760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	401
Acc65I	GGTACC	1 cut(s)	378
AccB1I	GGYRCC	2 cut(s)	192, 378
AccB7I	CCANNNNNTGG	1 cut(s)	189
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	189
AgsI	TTSAA	3 cut(s)	139, 289, 368
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	2 cut(s)	63, 343
AluI	AGCT	2 cut(s)	63, 343
Alw21I	GWGCWC	1 cut(s)	32
ApeKI	GCWGC	4 cut(s)	21, 42, 132, 146
Asp718I	GGTACC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	249
BanI	GGYRCC	2 cut(s)	192, 378
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	4 cut(s)	33, 54, 119, 133
BccI	CCATC	2 cut(s)	74, 369
BciT130I	CCWGG	1 cut(s)	198
BfmI	CTRYAG	1 cut(s)	344
BfoI	RGCGCY	1 cut(s)	247
BisI	GCNGC	4 cut(s)	22, 43, 133, 147
BlsI	GCNGC	4 cut(s)	23, 44, 134, 148
Bme1390I	CCNGG	1 cut(s)	198
Bme18I	GGWCC	1 cut(s)	249
BmgT120I	GGNCC	1 cut(s)	249
BmiI	GGNNCC	3 cut(s)	181, 194, 380
BmrFI	CCNGG	1 cut(s)	198
BmrI	ACTGGG	1 cut(s)	341
BmsI	GCATC	1 cut(s)	78
BmuI	ACTGGG	1 cut(s)	341
BpiI	GAAGAC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	189
Bse1I	ACTGG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	380
BseLI	CCNNNNNNNGG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	336
BseXI	GCAGC	4 cut(s)	33, 54, 119, 133
BseYI	CCCAGC	1 cut(s)	207
BshNI	GGYRCC	2 cut(s)	192, 378
BsiHKAI	GWGCWC	1 cut(s)	32
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	32
BspLI	GGNNCC	3 cut(s)	181, 194, 380
BspQI	GCTCTTC	1 cut(s)	268
BspT107I	GGYRCC	2 cut(s)	192, 378
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	268
BstAPI	GCANNNNNTGC	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	151, 259, 327
BstF5I	GGATG	1 cut(s)	380
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	1 cut(s)	27
BstNI	CCWGG	1 cut(s)	198
BstNSI	RCATGY	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	196
BstSFI	CTRYAG	1 cut(s)	344
BstV1I	GCAGC	4 cut(s)	33, 54, 119, 133
BstV2I	GAAGAC	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	380
BtsIMutI	CAGTG	2 cut(s)	75, 329
Cac8I	GCNNGC	3 cut(s)	151, 259, 327
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	249
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	5 cut(s)	63, 132, 180, 201, 343
CviKI_1	RGCY	5 cut(s)	63, 132, 180, 201, 343
CviQI	GTAC	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	268
EarI	CTCTTC	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	249
EcoRII	CCWGG	1 cut(s)	196
EcoT22I	ATGCAT	1 cut(s)	357
FaeI	CATG	1 cut(s)	329
FaiI	YATR	7 cut(s)	6, 185, 223, 327, 346, 357, 401
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	1 cut(s)	325
Fnu4HI	GCNGC	4 cut(s)	22, 43, 133, 147
FokI	GGATG	1 cut(s)	387
Fsp4HI	GCNGC	4 cut(s)	22, 43, 133, 147
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	4 cut(s)	22, 43, 133, 147
GsaI	CCCAGC	1 cut(s)	211
HaeII	RGCGCY	1 cut(s)	247
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	1 cut(s)	329
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	292
Hpy188I	TCNGA	2 cut(s)	14, 297
Hpy188III	TCNNGA	1 cut(s)	289
HpyAV	CCTTC	2 cut(s)	88, 393
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	4 cut(s)	21, 69, 329, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	329
HspAI	GCGC	1 cut(s)	244
KpnI	GGTACC	1 cut(s)	382
LguI	GCTCTTC	1 cut(s)	268
LmnI	GCTCC	2 cut(s)	39, 185
LpnPI	CCDG	9 cut(s)	175, 183, 193, 210, 232, 265, 271, 286, 317
Lsp1109I	GCAGC	4 cut(s)	33, 54, 119, 133
LweI	GCATC	1 cut(s)	78
MboII	GAAGA	4 cut(s)	96, 99, 255, 258
MhlI	GDGCHC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	17
MnlI	CCTC	1 cut(s)	117
Mph1103I	ATGCAT	1 cut(s)	357
MspA1I	CMGCKG	1 cut(s)	63
MspR9I	CCNGG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	27
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	3 cut(s)	181, 194, 380
NsiI	ATGCAT	1 cut(s)	357
NspI	RCATGY	1 cut(s)	329
PaeI	GCATGC	1 cut(s)	329
PciSI	GCTCTTC	1 cut(s)	268
PfeI	GAWTC	1 cut(s)	292
PflMI	CCANNNNNTGG	1 cut(s)	189
PkrI	GCNGC	4 cut(s)	23, 44, 134, 148
PsiI	TTATAA	1 cut(s)	401
Psp6I	CCWGG	1 cut(s)	196
PspFI	CCCAGC	1 cut(s)	207
PspGI	CCWGG	1 cut(s)	196
PspN4I	GGNNCC	3 cut(s)	181, 194, 380
PspPI	GGNCC	1 cut(s)	249
PvuII	CAGCTG	1 cut(s)	63
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
SapI	GCTCTTC	1 cut(s)	268
SatI	GCNGC	4 cut(s)	22, 43, 133, 147
Sau96I	GGNCC	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	198
SduI	GDGCHC	1 cut(s)	32
SetI	ASST	2 cut(s)	65, 345
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	1 cut(s)	344
SinI	GGWCC	1 cut(s)	249
SphI	GCATGC	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	292
TscAI	CASTG	2 cut(s)	82, 336
TseI	GCWGC	4 cut(s)	21, 42, 132, 146
TspRI	CASTG	2 cut(s)	82, 336
Van91I	CCANNNNNTGG	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	249
XceI	RCATGY	1 cut(s)	329
Zsp2I	ATGCAT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.