RLG00000023163
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
19231213 .. 19236695
5483 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023163

Sequence Viewer

Length: 1650 bp
ATGGAAGCGTCAACTTATAGTTTGATCAGAGAGAAGTTGGTTTTTGGGGTCCAAGTCAAACAGCAAAGAAAGGTGTTGGGGTTTGGTGAATTGAGAAGAACAAGTACAGGGTTAAAGAATCTGTGTATGACAGATAAGGCCACTGGCTTTGGTGGATTGAAGCTCACTTCTGCGGCTATGGGAGCCAACCTTGGACGTCTTGATGGGATTTCCATGACCTCCTTGAAACCCAGATCAGTCATGGCTCACGCTGCTTCTGGTGCAGATGGAGACATTGAGAATCTTGTTCCTTCCAAGCCTCAGGTCAAATCTTCTGGAATAGTGTTGCCATTTGTTGGTGTTGCCTGTCTTGGAGCCATTTTATTTGGTTATCATCTCGGGGTGGTAAATGGTGCTCTTGAGTACCTGTCGAAGGATCTTGGTATTGCTGAAAACGTTGCATTAAAAGGGTGGGTGGTTAGCACGCTTCTAGCTGGTGCCACAGTTGGATCTTTCACTGGTGGAGCATTGGCTGACAAGTTTGGGAGAAGTAGAACTTTTCAACTTGATGCAATTCCACTAACGATTGGAGCATTTTTATGTGCGACAGCACAGAGTGTGGAGCAAATGATAGTTGGCCGCTTACTTGCTGGCATTGGAATCGGCATCTCATCGGCTATTGTCCCACTTTACATTTCTGAGATCTCCCCAACTGAAATTCGGGGCGCACTTGGATCTGTAAACCAGCTTTTTATATGTGTTGGAATCCTTGGAGCACTGGTGGCTGGATTACCTTTATCAGCAAATCCGTTATGGTGGAGGACAATGTTTGGTATTGCGATAGTTCCCTCTGTTCTATTGGCTTTAGGAATGGCTGTTTCACCCGAAAGTCCTAGATGGCTCTTACAGCAAGGAAAAACTTCTCAGGCTGAAAAGGTTATAAAAACATTATACGGAAAAGAGAGAGTAACTGAGGTGATGCATGACTTAACATCAACAAGTCATGGATCTGCTGAACCCGAAGCAGGCTGGTTTGATCTGTTTAGTAGCCGCTATTGGAAAGTTGTTAGTGTTGGTGCGGCACTTTTCTTGTTCCAACAGTTAGCTGGGATAAATGCTGTGGTTTATTATTCCACTTCTGTCTTCCGCAGTGCTGGCATAACATCAGATGTTGCAGCAAGTGCTCTCGTTGGAGCAGCAAATGTCTTTGGCACAGCTGTTGCATCATCACTGATGGACAGACAAGGAAGGAAAAGTCTTCTCCTCATTAGTTTTGGAGGAATGGCTGCTTCAATGTTGCTGCTTGCTTTGTCTTTCACTTGGAGTGTTTTGGCTCCAAATTCTGGCACCCTGGCTGTCGCTGGGACTGTTCTCTATGTATTGTCCTTTTCACTTGGCGCTGGTCCTGTGCCTGCTCTTCTTCTGCCAGAAATATTTGCTTCAAGAATCAGAGCAAAAGCAGTTTCTTTGTCATTGGGCATGCACTGGATATCAAACTTCGTCATAGGCCTGTATTTCTTGAGCTTTGTAACCAAGTTCGGGATCAGCTCAGTGTATCTGGGATTCTCAGCTGTTTGTCTGCTTGCGGTCTTGTACATAGCTGGTAATGTTGTTGAAACTAAAGGGCGATCTTTGGAGGACATAGAGCGTGCCCTTAGCGTTCCAACCTGA

Protein Analysis

550

Amino Acids

57.55

Weight (kDa)

9.38

Isoelectric Point (pI)

30.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 114 - 544 2.5e-107 Sugar (and other) transporter
MFS_1 PF07690 116 - 460 1.4e-26 Major Facilitator Superfamily
MFS_1 PF07690 387 - 526 8.5e-06 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 920
AatII GACGTC 1 cut(s) 199
AccB1I GGYRCC 2 cut(s) 476, 1325
AccB7I CCANNNNNTGG 2 cut(s) 335, 1322
AciI CCGC 6 cut(s) 173, 619, 1030, 1058, 1126, 1565
AclI AACGTT 1 cut(s) 435
AclWI GGATC 5 cut(s) 423, 496, 721, 994, 1529
AcoI YGGCCR 1 cut(s) 616
AcsI RAATTY 2 cut(s) 696, 1318
AcyI GRCGYC 1 cut(s) 196
AdeI CACNNNGTG 1 cut(s) 596
AfaI GTAC 3 cut(s) 106, 404, 1574
AfiI CCNNNNNNNGG 5 cut(s) 335, 412, 1004, 1322, 1518
AgsI TTSAA 6 cut(s) 160, 226, 542, 1272, 1422, 1595
AjnI CCWGG 1 cut(s) 1329
AluBI AGCT 9 cut(s) 163, 473, 727, 1085, 1196, 1503, 1527, 1550, 1580
AluI AGCT 9 cut(s) 163, 473, 727, 1085, 1196, 1503, 1527, 1550, 1580
Alw21I GWGCWC 3 cut(s) 397, 757, 1165
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 5 cut(s) 423, 496, 721, 994, 1529
Ama87I CYCGRG 1 cut(s) 377
AoxI GGCC 3 cut(s) 138, 616, 1486
ApeKI GCWGC 5 cut(s) 251, 1154, 1175, 1265, 1279
ApoI RAATTY 2 cut(s) 696, 1318
Asp700I GAANNNNTTC 1 cut(s) 898
AspLEI GCGC 2 cut(s) 707, 1379
AspS9I GGNCC 2 cut(s) 49, 1382
AsuHPI GGTGA 3 cut(s) 98, 852, 967
AvaI CYCGRG 1 cut(s) 377
AvaII GGWCC 2 cut(s) 49, 1382
AxyI CCTNAGG 1 cut(s) 300
BaeGI GKGCMC 1 cut(s) 1633
BanI GGYRCC 2 cut(s) 476, 1325
BarI GAAGNNNNNNTAC 2 cut(s) 88, 120
BbsI GAAGAC 2 cut(s) 1114, 1229
Bbv12I GWGCWC 3 cut(s) 397, 757, 1165
BbvI GCAGC 5 cut(s) 238, 1166, 1187, 1252, 1266
BccI CCATC 4 cut(s) 197, 260, 870, 1207
BcgI CGANNNNNNTGC 2 cut(s) 622, 656
BciT130I CCWGG 1 cut(s) 1331
BclI TGATCA 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 2 cut(s) 470, 873
BfoI RGCGCY 1 cut(s) 1380
BglII AGATCT 1 cut(s) 681
BisI GCNGC 9 cut(s) 174, 252, 619, 1030, 1059, 1155, 1176, 1266, 1280
BlsI GCNGC 9 cut(s) 175, 253, 620, 1031, 1060, 1156, 1177, 1267, 1281
Bme1390I CCNGG 1 cut(s) 1331
Bme18I GGWCC 2 cut(s) 49, 1382
BmeT110I CYCGRG 1 cut(s) 377
BmgT120I GGNCC 2 cut(s) 49, 1382
BmiI GGNNCC 6 cut(s) 50, 184, 355, 478, 1314, 1327
BmrFI CCNGG 1 cut(s) 1331
BmsI GCATC 4 cut(s) 538, 654, 948, 1211
BpiI GAAGAC 2 cut(s) 1114, 1229
Bpu10I CCTNAGC 1 cut(s) 1634
BpuEI CTTGAG 2 cut(s) 419, 1519
BsaHI GRCGYC 1 cut(s) 196
BsaJI CCNNGG 3 cut(s) 190, 748, 1329
BsaXI ACNNNNNCTCC 2 cut(s) 744, 774
Bsc4I CCNNNNNNNGG 5 cut(s) 335, 412, 1004, 1322, 1518
Bse1I ACTGG 4 cut(s) 148, 502, 762, 1469
Bse21I CCTNAGG 1 cut(s) 300
BseBI CCWGG 1 cut(s) 1331
BseDI CCNNGG 3 cut(s) 190, 748, 1329
BseLI CCNNNNNNNGG 5 cut(s) 335, 412, 1004, 1322, 1518
BseMII CTCAG 6 cut(s) 314, 669, 917, 942, 1542, 1560
BseNI ACTGG 4 cut(s) 148, 502, 762, 1469
BseRI GAGGAG 1 cut(s) 1232
BseSI GKGCMC 1 cut(s) 1633
BseXI GCAGC 5 cut(s) 238, 1166, 1187, 1252, 1266
BseYI CCCAGC 2 cut(s) 1085, 1340
BsgI GTGCAG 1 cut(s) 282
BshFI GGCC 3 cut(s) 140, 618, 1488
BshNI GGYRCC 2 cut(s) 476, 1325
BsiHKAI GWGCWC 3 cut(s) 397, 757, 1165
BsiHKCI CYCGRG 1 cut(s) 377
BslFI GGGAC 2 cut(s) 647, 1357
BslI CCNNNNNNNGG 5 cut(s) 335, 412, 1004, 1322, 1518
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 2 cut(s) 647, 1357
BsnI GGCC 3 cut(s) 140, 618, 1488
BsoBI CYCGRG 1 cut(s) 377
Bsp1286I GDGCHC 4 cut(s) 397, 757, 1165, 1633
Bsp1407I TGTACA 1 cut(s) 1572
BspACI CCGC 6 cut(s) 173, 619, 1030, 1058, 1126, 1565
BspANI GGCC 3 cut(s) 140, 618, 1488
BspCNI CTCAG 6 cut(s) 313, 670, 916, 943, 1541, 1559
BspLI GGNNCC 6 cut(s) 50, 184, 355, 478, 1314, 1327
BspPI GGATC 5 cut(s) 423, 496, 721, 994, 1529
BspQI GCTCTTC 1 cut(s) 1401
BspT107I GGYRCC 2 cut(s) 476, 1325
BsrGI TGTACA 1 cut(s) 1572
BsrI ACTGG 4 cut(s) 148, 502, 762, 1469
BssECI CCNNGG 3 cut(s) 190, 748, 1329
BssNI GRCGYC 1 cut(s) 196
BssT1I CCWWGG 2 cut(s) 190, 748
Bst2UI CCWGG 1 cut(s) 1331
Bst4CI ACNGT 3 cut(s) 484, 1080, 1348
Bst6I CTCTTC 1 cut(s) 1401
BstACI GRCGYC 1 cut(s) 196
BstAPI GCANNNNNTGC 1 cut(s) 1160
BstAUI TGTACA 1 cut(s) 1572
BstC8I GCNNGC 9 cut(s) 464, 631, 1006, 1135, 1284, 1392, 1460, 1563, 1629
BstDEI CTNAG 7 cut(s) 300, 678, 903, 951, 1528, 1546, 1634
BstENI CCTNNNNNAGG 1 cut(s) 410
BstH2I RGCGCY 1 cut(s) 1380
BstHHI GCGC 2 cut(s) 707, 1379
BstMAI GTCTC 1 cut(s) 264
BstMWI GCNNNNNNNGC 7 cut(s) 182, 251, 260, 761, 886, 1134, 1160
BstNI CCWGG 1 cut(s) 1331
BstNSI RCATGY 1 cut(s) 1462
BstSCI CCNGG 1 cut(s) 1329
BstSLI GKGCMC 1 cut(s) 1633
BstV1I GCAGC 5 cut(s) 238, 1166, 1187, 1252, 1266
BstV2I GAAGAC 2 cut(s) 1114, 1229
BstX2I RGATCY 5 cut(s) 415, 488, 681, 713, 986
BstYI RGATCY 5 cut(s) 415, 488, 681, 713, 986
Bsu36I CCTNAGG 1 cut(s) 300
BsuRI GGCC 3 cut(s) 140, 618, 1488
BtsI GCAGTG 1 cut(s) 1135
BtsIMutI CAGTG 7 cut(s) 141, 495, 755, 1135, 1208, 1462, 1536
Cac8I GCNNGC 9 cut(s) 464, 631, 1006, 1135, 1284, 1392, 1460, 1563, 1629
CfoI GCGC 2 cut(s) 707, 1379
Cfr13I GGNCC 2 cut(s) 49, 1382
Csp6I GTAC 3 cut(s) 105, 403, 1573
CspCI CAANNNNNGTGG 2 cut(s) 130, 165
CviAII CATG 5 cut(s) 214, 241, 962, 983, 1459
CviQI GTAC 3 cut(s) 105, 403, 1573
DdeI CTNAG 7 cut(s) 300, 678, 903, 951, 1528, 1546, 1634
DraIII CACNNNGTG 1 cut(s) 596
EaeI YGGCCR 1 cut(s) 616
Eam1104I CTCTTC 1 cut(s) 1401
EarI CTCTTC 1 cut(s) 1401
Eco130I CCWWGG 2 cut(s) 190, 748
Eco147I AGGCCT 1 cut(s) 1488
Eco32I GATATC 1 cut(s) 1470
Eco47I GGWCC 2 cut(s) 49, 1382
Eco81I CCTNAGG 1 cut(s) 300
Eco88I CYCGRG 1 cut(s) 377
EcoNI CCTNNNNNAGG 1 cut(s) 410
EcoRII CCWGG 1 cut(s) 1329
EcoRV GATATC 1 cut(s) 1470
EcoT14I CCWWGG 2 cut(s) 190, 748
EcoT22I ATGCAT 1 cut(s) 963
ErhI CCWWGG 2 cut(s) 190, 748
FaeI CATG 5 cut(s) 217, 244, 965, 986, 1462
FalI AAGNNNNNCTT 2 cut(s) 520, 552
FaqI GGGAC 2 cut(s) 647, 1357
FatI CATG 5 cut(s) 213, 240, 961, 982, 1458
FbaI TGATCA 1 cut(s) 24
Fnu4HI GCNGC 9 cut(s) 174, 252, 619, 1030, 1059, 1155, 1176, 1266, 1280
Fsp4HI GCNGC 9 cut(s) 174, 252, 619, 1030, 1059, 1155, 1176, 1266, 1280
FspBI CTAG 2 cut(s) 470, 873
GlaI GCGC 2 cut(s) 706, 1378
GluI GCNGC 9 cut(s) 174, 252, 619, 1030, 1059, 1155, 1176, 1266, 1280
GsaI CCCAGC 2 cut(s) 1089, 1344
HaeII RGCGCY 1 cut(s) 1380
HaeIII GGCC 3 cut(s) 140, 618, 1488
HhaI GCGC 2 cut(s) 707, 1379
Hin1I GRCGYC 1 cut(s) 196
Hin1II CATG 5 cut(s) 217, 244, 965, 986, 1462
Hin6I GCGC 2 cut(s) 705, 1377
HinP1I GCGC 2 cut(s) 705, 1377
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 6 cut(s) 118, 280, 639, 744, 1425, 1542
HphI GGTGA 3 cut(s) 98, 852, 967
Hpy166II GTNNAC 2 cut(s) 12, 721
Hpy188I TCNGA 4 cut(s) 29, 679, 1147, 1430
Hpy188III TCNNGA 6 cut(s) 200, 315, 398, 1422, 1498, 1519
Hpy8I GTNNAC 2 cut(s) 12, 721
HpyAV CCTTC 3 cut(s) 300, 406, 1221
HpyCH4III ACNGT 3 cut(s) 484, 1080, 1348
HpyCH4IV ACGT 2 cut(s) 196, 435
HpyCH4V TGCA 7 cut(s) 263, 440, 551, 961, 1154, 1202, 1462
HpyF10VI GCNNNNNNNGC 7 cut(s) 182, 251, 260, 761, 886, 1134, 1160
HpyF3I CTNAG 7 cut(s) 300, 678, 903, 951, 1528, 1546, 1634
HpySE526I ACGT 2 cut(s) 196, 435
Hsp92I GRCGYC 1 cut(s) 196
Hsp92II CATG 5 cut(s) 217, 244, 965, 986, 1462
HspAI GCGC 2 cut(s) 705, 1377
Ksp22I TGATCA 1 cut(s) 24
LguI GCTCTTC 1 cut(s) 1401
LmnI GCTCC 8 cut(s) 182, 353, 503, 569, 601, 752, 1172, 1318
Lsp1109I GCAGC 5 cut(s) 238, 1166, 1187, 1252, 1266
LweI GCATC 4 cut(s) 538, 654, 948, 1211
MaeI CTAG 2 cut(s) 470, 873
MaeII ACGT 2 cut(s) 196, 435
MaeIII GTNAC 2 cut(s) 946, 1507
MboII GAAGA 6 cut(s) 108, 303, 1114, 1229, 1388, 1391
MflI RGATCY 5 cut(s) 415, 488, 681, 713, 986
MhlI GDGCHC 4 cut(s) 397, 757, 1165, 1633
MluCI AATT 4 cut(s) 89, 552, 696, 1318
MmeI TCCRAC 4 cut(s) 466, 721, 1099, 1150
MnlI CCTC 8 cut(s) 229, 309, 792, 838, 946, 1250, 1253, 1609
Mph1103I ATGCAT 1 cut(s) 963
MroXI GAANNNNTTC 1 cut(s) 898
MseI TTAA 3 cut(s) 113, 443, 968
MslI CAYNNNNRTG 1 cut(s) 577
MspA1I CMGCKG 2 cut(s) 1196, 1550
MspR9I CCNGG 1 cut(s) 1331
MvaI CCWGG 1 cut(s) 1331
MwoI GCNNNNNNNGC 7 cut(s) 182, 251, 260, 761, 886, 1134, 1160
NlaIII CATG 5 cut(s) 217, 244, 965, 986, 1462
NlaIV GGNNCC 6 cut(s) 50, 184, 355, 478, 1314, 1327
NsiI ATGCAT 1 cut(s) 963
NspI RCATGY 1 cut(s) 1462
PaeI GCATGC 1 cut(s) 1462
PceI AGGCCT 1 cut(s) 1488
PciSI GCTCTTC 1 cut(s) 1401
PdmI GAANNNNTTC 1 cut(s) 898
PfeI GAWTC 6 cut(s) 118, 280, 639, 744, 1425, 1542
PflMI CCANNNNNTGG 2 cut(s) 335, 1322
PkrI GCNGC 9 cut(s) 175, 253, 620, 1031, 1060, 1156, 1177, 1267, 1281
PsiI TTATAA 1 cut(s) 920
Psp1406I AACGTT 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 1329
PspFI CCCAGC 2 cut(s) 1085, 1340
PspGI CCWGG 1 cut(s) 1329
PspN4I GGNNCC 6 cut(s) 50, 184, 355, 478, 1314, 1327
PspPI GGNCC 2 cut(s) 49, 1382
PsuI RGATCY 5 cut(s) 415, 488, 681, 713, 986
PvuII CAGCTG 2 cut(s) 1196, 1550
RsaI GTAC 3 cut(s) 106, 404, 1574
RsaNI GTAC 3 cut(s) 105, 403, 1573
RseI CAYNNNNRTG 1 cut(s) 577
SapI GCTCTTC 1 cut(s) 1401
SaqAI TTAA 3 cut(s) 113, 443, 968
SatI GCNGC 9 cut(s) 174, 252, 619, 1030, 1059, 1155, 1176, 1266, 1280
Sau96I GGNCC 2 cut(s) 49, 1382
ScrFI CCNGG 1 cut(s) 1331
SduI GDGCHC 4 cut(s) 397, 757, 1165, 1633
SfaNI GCATC 4 cut(s) 538, 654, 948, 1211
SinI GGWCC 2 cut(s) 49, 1382
SmiMI CAYNNNNRTG 1 cut(s) 577
SmlI CTYRAG 2 cut(s) 398, 1498
SmoI CTYRAG 2 cut(s) 398, 1498
SphI GCATGC 1 cut(s) 1462
Sse9I AATT 4 cut(s) 89, 552, 696, 1318
SseBI AGGCCT 1 cut(s) 1488
SsiI CCGC 6 cut(s) 173, 619, 1030, 1058, 1126, 1565
SspI AATATT 1 cut(s) 1413
SspMI CTAG 2 cut(s) 470, 873
StuI AGGCCT 1 cut(s) 1488
StyD4I CCNGG 1 cut(s) 1329
StyI CCWWGG 2 cut(s) 190, 748
TaaI ACNGT 3 cut(s) 484, 1080, 1348
TaiI ACGT 2 cut(s) 199, 438
TaqI TCGA 1 cut(s) 410
TasI AATT 4 cut(s) 89, 552, 696, 1318
TatI WGTACW 2 cut(s) 104, 1572
TauI GCSGC 4 cut(s) 176, 621, 1032, 1061
TfiI GAWTC 6 cut(s) 118, 280, 639, 744, 1425, 1542
Tru1I TTAA 3 cut(s) 113, 443, 968
Tru9I TTAA 3 cut(s) 113, 443, 968
TscAI CASTG 7 cut(s) 148, 502, 762, 1135, 1215, 1469, 1536
TseI GCWGC 5 cut(s) 251, 1154, 1175, 1265, 1279
TspGWI ACGGA 2 cut(s) 777, 948
TspRI CASTG 7 cut(s) 148, 502, 762, 1135, 1215, 1469, 1536
Van91I CCANNNNNTGG 2 cut(s) 335, 1322
VpaK11BI GGWCC 2 cut(s) 49, 1382
XagI CCTNNNNNAGG 1 cut(s) 410
XapI RAATTY 2 cut(s) 696, 1318
XceI RCATGY 1 cut(s) 1462
XcmI CCANNNNNNNNNTGG 2 cut(s) 238, 1082
XmnI GAANNNNTTC 1 cut(s) 898
XspI CTAG 2 cut(s) 470, 873
ZraI GACGTC 1 cut(s) 197
Zsp2I ATGCAT 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.