Rw0G000470
ERF Family

Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00015
Physical Location & Seq
Reverse (-)
517 .. 5962
5446 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G000470.1

Sequence Viewer

Length: 1524 bp
ATGCAAGCGTCAACTTATGGTTCGATCAGAGAGAAGTTGGTTTTCGGGGTCCAAGTCAGACAGCAAAGGAAGGTGTTGGGGTCAAGTACAGGGTTAAAGAATCTGCGTATGACAGATAAGGCCACTGGCTTTGGTGGATTGAAGCTCACTTCTGCGGCTATGGGAGCCAACCTTGGACGTCTTGATGGGATTTCCATGACTTCCTTGAAACCCAGATCAGTCAAGGCTCACGCTGCTTCTGATGGAGACGTTGAGAATCTTGTTCCTCCCAAGCCTCAGGTCAAATCTTCTGGAATAGTGTTGCCATTTGTTGGTGTTGCCTGTCTTGGAGCCATTTTATTTGGTTATCATCTCGGGGTGGTAAATGGTGCTCTTGAGTACCTGTCGAAGGATCTTGGTATTACTGAAAACGTTGCATTAAAAGGGTGGGTGGTTAGCACACTTCGCGCGGGTGCCACAGTTGGATCTTTCACTGGTGGAACATTGGCTGACAAGTTTGGGAGAACTAGAACTTTTCAACTTGATGCAATTCCACTAACGATTGGAGCATTTTTATGTGCCACAGCCCAGAGTGTGGAGCAAATGATAGTTGGCCGCTTACTTGCTGGCATTGGAATCGGCATCTCACGCAGCGGCTATTCTTTTATATGTCTTGGAATCCTTGGAGCACTGGGGGCTGGATTACCTTTATCAGCAAATCCGTGGAGGACAATGTTTGGTATTGCAATAGTTCCCTCTGTTCTATTGGCTTTAGGAATGGCTCAAGGAAAAACTTCTCAGGCTGAAAAGGTTATAAAAACATTATACGGAAAAGAGAGAGTAACTGAGGTGATGCATGACTTAACATCAACAAGTCATGGATCTGCTGAACCCGAAGCAGGCTGGTTTGATCTGTTTAGTAGCCGCTATTGGAAAGTTGTTAGTGTTGGTGCAGCACTTTTCTTGTTCCAACAGTTAGCTGGGATAAATGCTGTGGTTTATTATTCCACTTCTGTCTTCCGCAGTGCTGGCATAACATCAGATGTTGCAGCAAGTGCTCTCGTTGGAGCAGCAAATGTCTTTGGCACAGCTGTTGCATCATCACTGATGGACAGACAAGGAAGGAAAAGTCTTCTCCTCATTAGTTTTGGAGGAATGGCTGCTTCAATGTTGCTGCTTGCTTTGTCTTTCACTTGGAGTGTTTTGGCTCCATATTCTGGCACCCTGGCTGTCGTTGGGACTGTTCTCTATGTATTGTCCTTTTCGCTTGGCGCTGGTCCTGTGCCTGCTCTTCTTCTGCCAGAGATATTTGCTTCAAGAATCAGAGCAAAAGCAGTTTCTTTGTCATTGGGCATGCACTGGATATCAAACTTCGTCATAGGCCTGTATTTCTTGAGCTTTGTAACCAAGTTCGGGATCAGCTCAGTGTATCTGGGATTCTCGGCTGTTTGTCTGCTTGCGGTCTTGTACATAGCTGGTAATGTTGTTGAAACTAAAGGGCGATCTTTGGAGGACATAGAGCGTGCCCTTAGCGTTCCAACCTGA

Protein Analysis

507

Amino Acids

53.08

Weight (kDa)

9.71

Isoelectric Point (pI)

23.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 106 - 210 7.1e-18 Sugar (and other) transporter
MFS_1 PF07690 108 - 209 8.6e-11 Major Facilitator Superfamily
Sugar_tr PF00083 215 - 502 1.1e-55 Sugar (and other) transporter
MFS_1 PF07690 215 - 416 3.1e-07 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 794
AatII GACGTC 1 cut(s) 181
AccB1I GGYRCC 2 cut(s) 452, 1199
AccB7I CCANNNNNTGG 3 cut(s) 311, 574, 1196
AccII CGCG 2 cut(s) 447, 449
AciI CCGC 7 cut(s) 155, 449, 595, 633, 904, 1000, 1439
AclI AACGTT 1 cut(s) 411
AclWI GGATC 4 cut(s) 399, 472, 868, 1403
AcoI YGGCCR 1 cut(s) 592
AcyI GRCGYC 1 cut(s) 178
AfaI GTAC 3 cut(s) 88, 380, 1448
AfiI CCNNNNNNNGG 6 cut(s) 311, 388, 574, 878, 1196, 1392
AgsI TTSAA 6 cut(s) 142, 208, 518, 1146, 1296, 1469
AjnI CCWGG 1 cut(s) 1203
AluBI AGCT 6 cut(s) 145, 959, 1070, 1377, 1401, 1454
AluI AGCT 6 cut(s) 145, 959, 1070, 1377, 1401, 1454
Alw21I GWGCWC 3 cut(s) 373, 670, 1039
Alw26I GTCTC 1 cut(s) 240
AlwI GGATC 4 cut(s) 399, 472, 868, 1403
Ama87I CYCGRG 1 cut(s) 353
AoxI GGCC 3 cut(s) 120, 592, 1360
ApeKI GCWGC 7 cut(s) 233, 630, 932, 1028, 1049, 1139, 1153
Asp700I GAANNNNTTC 1 cut(s) 772
AspLEI GCGC 2 cut(s) 449, 1253
AspS9I GGNCC 2 cut(s) 49, 1256
AsuHPI GGTGA 1 cut(s) 841
AvaI CYCGRG 1 cut(s) 353
AvaII GGWCC 2 cut(s) 49, 1256
AxyI CCTNAGG 1 cut(s) 276
BaeGI GKGCMC 1 cut(s) 1507
BanI GGYRCC 2 cut(s) 452, 1199
BbsI GAAGAC 2 cut(s) 988, 1103
Bbv12I GWGCWC 3 cut(s) 373, 670, 1039
BbvI GCAGC 7 cut(s) 220, 642, 944, 1040, 1061, 1126, 1140
BccI CCATC 3 cut(s) 179, 236, 1081
BcgI CGANNNNNNTGC 2 cut(s) 598, 632
BciT130I CCWGG 1 cut(s) 1205
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 1 cut(s) 507
BfoI RGCGCY 1 cut(s) 1254
Bme1390I CCNGG 1 cut(s) 1205
Bme18I GGWCC 2 cut(s) 49, 1256
BmeT110I CYCGRG 1 cut(s) 353
BmgT120I GGNCC 2 cut(s) 49, 1256
BmiI GGNNCC 6 cut(s) 50, 166, 331, 454, 1188, 1201
BmrFI CCNGG 1 cut(s) 1205
BmrI ACTGGG 1 cut(s) 680
BmsI GCATC 4 cut(s) 514, 630, 822, 1085
BmuI ACTGGG 1 cut(s) 680
BpiI GAAGAC 2 cut(s) 988, 1103
Bpu10I CCTNAGC 1 cut(s) 1508
BpuEI CTTGAG 3 cut(s) 395, 747, 1393
BsaHI GRCGYC 1 cut(s) 178
BsaJI CCNNGG 4 cut(s) 172, 661, 701, 1203
Bsc4I CCNNNNNNNGG 6 cut(s) 311, 388, 574, 878, 1196, 1392
Bse1I ACTGG 4 cut(s) 130, 478, 675, 1343
Bse21I CCTNAGG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 1205
BseDI CCNNGG 4 cut(s) 172, 661, 701, 1203
BseLI CCNNNNNNNGG 6 cut(s) 311, 388, 574, 878, 1196, 1392
BseMII CTCAG 4 cut(s) 290, 791, 816, 1416
BseNI ACTGG 4 cut(s) 130, 478, 675, 1343
BseRI GAGGAG 1 cut(s) 1106
BseSI GKGCMC 1 cut(s) 1507
BseXI GCAGC 7 cut(s) 220, 642, 944, 1040, 1061, 1126, 1140
BseYI CCCAGC 1 cut(s) 959
BsgI GTGCAG 1 cut(s) 951
Bsh1236I CGCG 2 cut(s) 447, 449
BshFI GGCC 3 cut(s) 122, 594, 1362
BshNI GGYRCC 2 cut(s) 452, 1199
BsiHKAI GWGCWC 3 cut(s) 373, 670, 1039
BsiHKCI CYCGRG 1 cut(s) 353
BslFI GGGAC 1 cut(s) 1231
BslI CCNNNNNNNGG 6 cut(s) 311, 388, 574, 878, 1196, 1392
BsmAI GTCTC 1 cut(s) 240
BsmBI CGTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 1231
BsnI GGCC 3 cut(s) 122, 594, 1362
BsoBI CYCGRG 1 cut(s) 353
Bsp1286I GDGCHC 4 cut(s) 373, 670, 1039, 1507
Bsp1407I TGTACA 1 cut(s) 1446
Bsp143I GATC 8 cut(s) 24, 215, 391, 464, 860, 889, 1395, 1481
BspACI CCGC 7 cut(s) 155, 449, 595, 633, 904, 1000, 1439
BspANI GGCC 3 cut(s) 122, 594, 1362
BspCNI CTCAG 4 cut(s) 289, 790, 817, 1415
BspFNI CGCG 2 cut(s) 447, 449
BspLI GGNNCC 6 cut(s) 50, 166, 331, 454, 1188, 1201
BspPI GGATC 4 cut(s) 399, 472, 868, 1403
BspQI GCTCTTC 1 cut(s) 1275
BspT107I GGYRCC 2 cut(s) 452, 1199
BsrGI TGTACA 1 cut(s) 1446
BsrI ACTGG 4 cut(s) 130, 478, 675, 1343
BssECI CCNNGG 4 cut(s) 172, 661, 701, 1203
BssMI GATC 8 cut(s) 24, 215, 391, 464, 860, 889, 1395, 1481
BssNI GRCGYC 1 cut(s) 178
BssT1I CCWWGG 2 cut(s) 172, 661
Bst2UI CCWGG 1 cut(s) 1205
Bst4CI ACNGT 3 cut(s) 460, 954, 1222
Bst6I CTCTTC 1 cut(s) 1275
BstACI GRCGYC 1 cut(s) 178
BstAPI GCANNNNNTGC 1 cut(s) 1034
BstAUI TGTACA 1 cut(s) 1446
BstC8I GCNNGC 9 cut(s) 6, 607, 880, 1009, 1158, 1266, 1334, 1437, 1503
BstDEI CTNAG 5 cut(s) 276, 777, 825, 1402, 1508
BstDSI CCRYGG 1 cut(s) 701
BstENI CCTNNNNNAGG 1 cut(s) 386
BstFNI CGCG 2 cut(s) 447, 449
BstH2I RGCGCY 1 cut(s) 1254
BstHHI GCGC 2 cut(s) 449, 1253
BstKTI GATC 8 cut(s) 27, 218, 394, 467, 863, 892, 1398, 1484
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 8 cut(s) 24, 215, 391, 464, 860, 889, 1395, 1481
BstMWI GCNNNNNNNGC 7 cut(s) 164, 233, 444, 627, 674, 1008, 1034
BstNI CCWGG 1 cut(s) 1205
BstNSI RCATGY 1 cut(s) 1336
BstSCI CCNGG 1 cut(s) 1203
BstSLI GKGCMC 1 cut(s) 1507
BstUI CGCG 2 cut(s) 447, 449
BstV1I GCAGC 7 cut(s) 220, 642, 944, 1040, 1061, 1126, 1140
BstV2I GAAGAC 2 cut(s) 988, 1103
BstX2I RGATCY 3 cut(s) 391, 464, 860
BstYI RGATCY 3 cut(s) 391, 464, 860
Bsu36I CCTNAGG 1 cut(s) 276
BsuRI GGCC 3 cut(s) 122, 594, 1362
BtgI CCRYGG 1 cut(s) 701
BtsI GCAGTG 1 cut(s) 1009
BtsIMutI CAGTG 7 cut(s) 123, 471, 668, 1009, 1082, 1336, 1410
Cac8I GCNNGC 9 cut(s) 6, 607, 880, 1009, 1158, 1266, 1334, 1437, 1503
CfoI GCGC 2 cut(s) 449, 1253
Cfr13I GGNCC 2 cut(s) 49, 1256
Csp6I GTAC 3 cut(s) 87, 379, 1447
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 4 cut(s) 196, 836, 857, 1333
CviQI GTAC 3 cut(s) 87, 379, 1447
DdeI CTNAG 5 cut(s) 276, 777, 825, 1402, 1508
DpnI GATC 8 cut(s) 26, 217, 393, 466, 862, 891, 1397, 1483
DpnII GATC 8 cut(s) 24, 215, 391, 464, 860, 889, 1395, 1481
EaeI YGGCCR 1 cut(s) 592
Eam1104I CTCTTC 1 cut(s) 1275
EarI CTCTTC 1 cut(s) 1275
Eco130I CCWWGG 2 cut(s) 172, 661
Eco147I AGGCCT 1 cut(s) 1362
Eco32I GATATC 1 cut(s) 1344
Eco47I GGWCC 2 cut(s) 49, 1256
Eco81I CCTNAGG 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 353
EcoNI CCTNNNNNAGG 1 cut(s) 386
EcoRII CCWGG 1 cut(s) 1203
EcoRV GATATC 1 cut(s) 1344
EcoT14I CCWWGG 2 cut(s) 172, 661
EcoT22I ATGCAT 1 cut(s) 837
ErhI CCWWGG 2 cut(s) 172, 661
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 4 cut(s) 199, 839, 860, 1336
FaqI GGGAC 1 cut(s) 1231
FatI CATG 4 cut(s) 195, 835, 856, 1332
FauI CCCGC 1 cut(s) 442
FspBI CTAG 1 cut(s) 507
GlaI GCGC 2 cut(s) 448, 1252
GsaI CCCAGC 1 cut(s) 963
HaeII RGCGCY 1 cut(s) 1254
HaeIII GGCC 3 cut(s) 122, 594, 1362
HhaI GCGC 2 cut(s) 449, 1253
Hin1I GRCGYC 1 cut(s) 178
Hin1II CATG 4 cut(s) 199, 839, 860, 1336
Hin6I GCGC 2 cut(s) 447, 1251
HinP1I GCGC 2 cut(s) 447, 1251
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 6 cut(s) 100, 256, 615, 657, 1299, 1416
HphI GGTGA 1 cut(s) 841
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 5 cut(s) 29, 59, 241, 1021, 1304
Hpy188III TCNNGA 6 cut(s) 182, 291, 374, 1296, 1372, 1393
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 3 cut(s) 64, 382, 1095
HpyCH4III ACNGT 3 cut(s) 460, 954, 1222
HpyCH4IV ACGT 3 cut(s) 178, 249, 411
HpyCH4V TGCA 9 cut(s) 4, 416, 527, 725, 835, 932, 1028, 1076, 1336
HpyF10VI GCNNNNNNNGC 7 cut(s) 164, 233, 444, 627, 674, 1008, 1034
HpyF3I CTNAG 5 cut(s) 276, 777, 825, 1402, 1508
HpySE526I ACGT 3 cut(s) 178, 249, 411
Hsp92I GRCGYC 1 cut(s) 178
Hsp92II CATG 4 cut(s) 199, 839, 860, 1336
HspAI GCGC 2 cut(s) 447, 1251
Kzo9I GATC 8 cut(s) 24, 215, 391, 464, 860, 889, 1395, 1481
LguI GCTCTTC 1 cut(s) 1275
LmnI GCTCC 7 cut(s) 164, 329, 545, 577, 665, 1046, 1192
Lsp1109I GCAGC 7 cut(s) 220, 642, 944, 1040, 1061, 1126, 1140
LweI GCATC 4 cut(s) 514, 630, 822, 1085
MaeI CTAG 1 cut(s) 507
MaeII ACGT 3 cut(s) 178, 249, 411
MaeIII GTNAC 2 cut(s) 820, 1381
MalI GATC 8 cut(s) 26, 217, 393, 466, 862, 891, 1397, 1483
MboI GATC 8 cut(s) 24, 215, 391, 464, 860, 889, 1395, 1481
MboII GAAGA 5 cut(s) 279, 988, 1103, 1262, 1265
MflI RGATCY 3 cut(s) 391, 464, 860
MhlI GDGCHC 4 cut(s) 373, 670, 1039, 1507
MluCI AATT 1 cut(s) 528
MmeI TCCRAC 3 cut(s) 442, 973, 1024
MnlI CCTC 8 cut(s) 276, 285, 699, 745, 820, 1124, 1127, 1483
Mph1103I ATGCAT 1 cut(s) 837
MroXI GAANNNNTTC 1 cut(s) 772
MseI TTAA 3 cut(s) 95, 419, 842
MslI CAYNNNNRTG 1 cut(s) 553
MspA1I CMGCKG 2 cut(s) 633, 1070
MspR9I CCNGG 1 cut(s) 1205
MvaI CCWGG 1 cut(s) 1205
MvnI CGCG 2 cut(s) 447, 449
MwoI GCNNNNNNNGC 7 cut(s) 164, 233, 444, 627, 674, 1008, 1034
NdeII GATC 8 cut(s) 24, 215, 391, 464, 860, 889, 1395, 1481
NlaIII CATG 4 cut(s) 199, 839, 860, 1336
NlaIV GGNNCC 6 cut(s) 50, 166, 331, 454, 1188, 1201
NmeAIII GCCGAG 1 cut(s) 1400
NsiI ATGCAT 1 cut(s) 837
NspI RCATGY 1 cut(s) 1336
PaeI GCATGC 1 cut(s) 1336
PceI AGGCCT 1 cut(s) 1362
PciSI GCTCTTC 1 cut(s) 1275
PdmI GAANNNNTTC 1 cut(s) 772
PfeI GAWTC 6 cut(s) 100, 256, 615, 657, 1299, 1416
PflMI CCANNNNNTGG 3 cut(s) 311, 574, 1196
PsiI TTATAA 1 cut(s) 794
Psp1406I AACGTT 1 cut(s) 411
Psp6I CCWGG 1 cut(s) 1203
PspFI CCCAGC 1 cut(s) 959
PspGI CCWGG 1 cut(s) 1203
PspN4I GGNNCC 6 cut(s) 50, 166, 331, 454, 1188, 1201
PspPI GGNCC 2 cut(s) 49, 1256
PsuI RGATCY 3 cut(s) 391, 464, 860
PvuII CAGCTG 1 cut(s) 1070
RsaI GTAC 3 cut(s) 88, 380, 1448
RsaNI GTAC 3 cut(s) 87, 379, 1447
RseI CAYNNNNRTG 1 cut(s) 553
SapI GCTCTTC 1 cut(s) 1275
SaqAI TTAA 3 cut(s) 95, 419, 842
Sau3AI GATC 8 cut(s) 24, 215, 391, 464, 860, 889, 1395, 1481
Sau96I GGNCC 2 cut(s) 49, 1256
ScrFI CCNGG 1 cut(s) 1205
SduI GDGCHC 4 cut(s) 373, 670, 1039, 1507
SfaNI GCATC 4 cut(s) 514, 630, 822, 1085
SinI GGWCC 2 cut(s) 49, 1256
SmiMI CAYNNNNRTG 1 cut(s) 553
SmlI CTYRAG 3 cut(s) 374, 762, 1372
SmoI CTYRAG 3 cut(s) 374, 762, 1372
SphI GCATGC 1 cut(s) 1336
Sse9I AATT 1 cut(s) 528
SseBI AGGCCT 1 cut(s) 1362
SsiI CCGC 7 cut(s) 155, 449, 595, 633, 904, 1000, 1439
SspMI CTAG 1 cut(s) 507
StuI AGGCCT 1 cut(s) 1362
StyD4I CCNGG 1 cut(s) 1203
StyI CCWWGG 2 cut(s) 172, 661
TaaI ACNGT 3 cut(s) 460, 954, 1222
TaiI ACGT 3 cut(s) 181, 252, 414
TaqI TCGA 2 cut(s) 23, 386
TasI AATT 1 cut(s) 528
TatI WGTACW 2 cut(s) 86, 1446
TauI GCSGC 4 cut(s) 158, 597, 636, 906
TfiI GAWTC 6 cut(s) 100, 256, 615, 657, 1299, 1416
Tru1I TTAA 3 cut(s) 95, 419, 842
Tru9I TTAA 3 cut(s) 95, 419, 842
TscAI CASTG 7 cut(s) 130, 478, 675, 1009, 1089, 1343, 1410
TseI GCWGC 7 cut(s) 233, 630, 932, 1028, 1049, 1139, 1153
TspGWI ACGGA 2 cut(s) 690, 822
TspRI CASTG 7 cut(s) 130, 478, 675, 1009, 1089, 1343, 1410
Van91I CCANNNNNTGG 3 cut(s) 311, 574, 1196
VpaK11BI GGWCC 2 cut(s) 49, 1256
XagI CCTNNNNNAGG 1 cut(s) 386
XceI RCATGY 1 cut(s) 1336
XcmI CCANNNNNNNNNTGG 1 cut(s) 956
XmnI GAANNNNTTC 1 cut(s) 772
XspI CTAG 1 cut(s) 507
ZraI GACGTC 1 cut(s) 179
Zsp2I ATGCAT 1 cut(s) 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.