Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007158

Physical Location & Seq

Genomic Coordinates Reverse (-)

19777960 .. 19786756

Gene Structure 8797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0217000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3147 bp

ATGTGTTGTTTGCTCTTAACTTTGCGCGCAACCACCAACCACTTTCTTCCCACTCACTTCTTCGCCGCTCCACGACTCCTCACTTTTCGCTCTGCCATCTCAACTCTCGCCATGTCCAGCCGCCCCAACTTCCAGGGTGGCCGCAGCAGAGGCGGCCCTAACTCCCGCGGCGGCGCTCGCCGTGGAGGCGGTGGTCGCGGCGGTGGAGGCCGAGGAGGAGGACGCGGCGGCGGCGGCGGCCGAGGCGGCGAACAGCGCTGGTGGGACCCCGTGTGGCGAGCGGAGCGACTGAGGCAACAAGCCGCCGAGATGGAAGTTCTTGATGCGAGTGAGTATTGGGGGAAGATGGAGCAGTTCAGAAGCGGAGCGGAGCAGGAGATGATAATAAGACGTAATTTTAGTCGGCATGATCAGCAAACCCTATATGAAATGGCCTATGAACTAGGGCTTCACTTCCATGCATATAATAAGGGGAAGGCTCTTGTGGTCAGCAAGGTTCCTCTGCCAGATTATCGGGCAGACCTTGATGATGTTCATGGTTCCACACAAAAAGAGATTCGAATGTCTACAGAGACTGCAGAGAGAGTCGGGAGTCTTTTGCAGAGCTCGCAGGGGCAGGGAAGCAAGCAAGCTTCTGGTAATGTCGCTTCAGTGGCGTCTGGGTCTGGCCAGGGAAACAAAGAAACAACTGTTAGTGAACATGCAACCAAAACCAGCTCCAGCTTGGAGCCTGATACTGTTAAGGAGAAAGAGAAACTCAGCCTTCAACTTAAGGAGTCACAGGAAAAAATGAAGGTAAGTAATAGTCTGAAAGCAATGCTGACATTCCGAGAAAAGCTTCCTGCATTCAATGTGAAGTCTGAGTTCCTGAGAGCTGTTTCTGAAAATCAGGTGTTGGTAGTCTCGGGTGAGACAGGTTGTGGCAAAACAACACAACTTCCTCAGTTTATTCTAGAAGATGAGATTTCACGTCTGCATGGTGCTGAGTGCAACATAATATGCACTCAGCCTCGCCGTATATCTGCCGTGTCTGTTGCTGCTCGTATATCCTCTGAAAGGGGAGAGAATCTTGGTGAAACTGTTGGTTATCAGATTCGACTGGAATCAAAGCGCTCTGCTCAAACAAGATTGCTATTTTGCACAACTGGAGTATTACTTCGTCAGTTGGTTCAAGACCCACAGTTAACTGGCGTGAGCCATTTGTTGGTTGATGAAATCCATGAAAGAGGCATGAACGAGGACTTTCTACTAATAATTTTGCGAGACCTTCTTCCTCGACGTCCAGATCTACGACTTATTCTAATGAGTGCTACCATCAATGCTGACTTGTTTTCCAAATACTTTGGAAATGCCCCAACAATACATATACCGGGATTAACGTTCCCTGTGGCAGAGTTATTTCTAGAAGACGTTTTGGAGAAAACTCATTATATAGTCAAGTCAGAGTCCGACAAGATGGAGAGGGGGAATTCCAGGAGAAGGAGACAGCAAGACTCCAAGAAGGATCCCTTAACTGAACTATTTGAGGATGTTGATATTGATCTTCACTACAAAAGTTACAGCACATCTACAAGAAAGTCTCTAGAAGCTTGGTCTGGTTCACAGCTTGATTTGGGTCTGGTGGAGGCAACTGTGGAACATATATGTCGCTATGAGAGAGATGGAGCAGTTCTTGTTTTCCTTACGGGCTGGGATGATATATCAAAGTTACTTGACAAAATTAAGGGAAATAGATTCCTTGGAGATCCTGAGAAGTTCATGGTTCTTCCCCTGCATGGGTCAATGCCTACTATCAATCAACGAGAAATATTTGATCGTCCTCCCACTAACAAAAGAAAAATTGTGCTAGCAACAAACATTGCAGAGAGCAGTATTACCATAGATGATGTCGTGTATGTCATAGACTGCGGAAAGGCAAAGGAAACGAGTTATGATGCTTTAAACAAGTTGGCTTGTCTATTACCATCATGGATTTCAAAGGCTTCAGCACATCAGAGACGAGGGCGTGCTGGCCGTGTCCAACCTGGAGTTTGTTACAGACTATATCCAAAAATGATTCACGATGCAATGCTCCAATATCAGTTACCTGAAATTCTCCGGACACCTTTGCAAGAGTTATGCCTCCATATAAAGAGTTTGCAGCTTGGAGCTGTTGGATCATTTTTGGCAAAGGCACTTCAACCACCAGATTCTCTTGCAGTTCAAAATGCCATCGAACTTCTCAAAACTATTGGAGCTTTAGATGATAGGGAGGAGCTTACTCCGCTTGGTCGCCATCTTTGTACACTACCATTGGATCCAAACATTGGAAAGATGCTTTTAATGGGTTCTATCTTTCAATGCCTCAATCCTGCCTTAACAATTGCTGCTGCCCTAGCTCATCGAGACCCATTTATCCTACCAATAGATAGGAAAGAGGAAGCTGATGCTGCAAAAAGATCCTTTGCTGGTGATTCTTTCAGTGATCACATAGCAGTTGTTAAAGCTTTTGAAGGATGGAAAGATGCAAAACATAATGGATCAGGAAAATCATTCTGTTGGGATAACTTTTTATCACCAGTAACTTTGCAGATGATGGAGGATATGAGGTTGCAGTTTGTAGATCTATTATCGAACATTGGCTTTGTCGACAAATCCAGGGGTGCTAACGCTTACAACCAATACAGCCATGACTTGGAGATGGTGTCTGCAATTCTTTGTGCTGGGCTTTACCCAAATGTTGTGCAGTGTAAAAGAAGAGGAAAGCGAACAGCATTCTACACCAAAGAAGTTGGTAAAGTCGATATCCATCCTGGATCAGTCAATGCTGGGGTTCACTTATTCCCTCTGCCTTACATGGTATATAGTGAAAAAGTGAAGACAGCCAGCATTTACATCAGAGACTCTACAAATATATCAGATTATTCTTTGCTTTTGTTTGGTGGTAATCTCATCCCAACCAAAACTGGAGAGGGCATTGAGATGCTTGGAGGTTACCTTCATTTCTCTGCATCAAAGAGTGTTTTGGAGTTGATTCGGAAATTGCGCCGTGAACTTGACAAGCTTTTAAACAGGAAGATTGACAACCCAGCATTGGATGTCTCTAGTGAGGGAAAGGGAGTAGTATCTGCTGTGGTTGAGCTATTGCATAGCCCAAATGTACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

1048

Amino Acids

116.38

Weight (kDa)

8.79

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	287 - 441	3.1e-09	DEAD/DEAH box helicase
Helicase_C	PF00271	546 - 673	1.1e-15	Helicase conserved C-terminal domain
WHD_HA2	PF04408	737 - 765	1e-09	Helicase associated domain (HA2), winged-helix
HA2_C	PF21010	766 - 825	2.4e-13	Helicase associated domain (HA2), ratchet-like
OB_NTP_bind	PF07717	896 - 976	1e-17	Oligonucleotide/oligosaccharide-binding (OB)-fold
RNA_hel_CTD	PF26026	986 - 1043	1.4e-21	C-terminal domain in RNA helicases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16150 AT5G16150 AT5G16150
fragaria_vesca	FvH4_1g25970 FvH4_1g25970 FvH4_1g25970
malus_domestica	MD09G1254500.v1.1 MD17G1246900.v1.1
prunus_persica	Prupe.3G144600_v2.0.a1
pyrus_communis	pycom09g17020 pycom17g24850
rosa_chinensis	RchiOBHm_Chr3g0485241
rosa_laevigata	RLG00000023163
rosa_multiflora	Rmu_sc0005072.1_g000021 Rmu_sc0024791.1_g000001 Rmu_sc0038513.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397150
rosa_rugosa	Rorug03G0217000 Rorug03G0217100
rosa_samantha	Rh3AG266500 Rh3BG302200 Rh3CG300200 Rh3DG296400
rosa_wichuraiana	Rw0G000470 Rw3G023760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1282
AccB7I	CCANNNNNTGG	3 cut(s)	1204, 2306, 2674
AccBSI	CCGCTC	3 cut(s)	68, 281, 368
AccI	GTMKAC	2 cut(s)	566, 2628
AccII	CGCG	4 cut(s)	27, 168, 198, 225
AccIII	TCCGGA	1 cut(s)	2097
AclI	AACGTT	1 cut(s)	1379
AclWI	GGATC	9 cut(s)	1499, 1512, 1739, 2164, 2291, 2304, 2433, 2527, 2803
AcoI	YGGCCR	4 cut(s)	139, 238, 667, 2011
AcsI	RAATTY	2 cut(s)	1468, 2091
AcuI	CTGAAG	2 cut(s)	633, 1968
AcyI	GRCGYC	2 cut(s)	656, 1279
AfaI	GTAC	2 cut(s)	2284, 3141
AfeI	AGCGCT	2 cut(s)	257, 1112
AfiI	CCNNNNNNNGG	8 cut(s)	1056, 1204, 1479, 1775, 1776, 2306, 2674, 3073
AflII	CTTAAG	1 cut(s)	770
AgsI	TTSAA	8 cut(s)	767, 850, 1172, 1977, 2180, 2204, 2339, 2492
AjiI	CACGTC	1 cut(s)	971
AjnI	CCWGG	6 cut(s)	132, 669, 1472, 2023, 2636, 2791
Alw21I	GWGCWC	1 cut(s)	608
AlwI	GGATC	9 cut(s)	1499, 1512, 1739, 2164, 2291, 2304, 2433, 2527, 2803
AlwNI	CAGNNNCTG	1 cut(s)	575
Ama87I	CYCGRG	1 cut(s)	904
Aor13HI	TCCGGA	1 cut(s)	2097
Aor51HI	AGCGCT	2 cut(s)	257, 1112
AoxI	GGCC	7 cut(s)	139, 154, 208, 238, 432, 667, 2011
ApeKI	GCWGC	6 cut(s)	144, 1037, 2140, 2366, 2369, 2429
ApoI	RAATTY	2 cut(s)	1468, 2091
Asp700I	GAANNNNTTC	1 cut(s)	837
AspLEI	GCGC	6 cut(s)	27, 29, 176, 258, 1113, 3027
AspS9I	GGNCC	2 cut(s)	155, 265
AsuC2I	CCSGG	1 cut(s)	1371
AsuHPI	GGTGA	4 cut(s)	920, 1085, 2462, 2547
AsuII	TTCGAA	1 cut(s)	559
AsuNHI	GCTAGC	1 cut(s)	1846
AvaI	CYCGRG	1 cut(s)	904
AvaII	GGWCC	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	669
BamHI	GGATCC	2 cut(s)	1504, 2296
BanII	GRGCYC	1 cut(s)	608
BarI	GAAGNNNNNNTAC	2 cut(s)	631, 663
BbsI	GAAGAC	2 cut(s)	1413, 2864
Bbv12I	GWGCWC	1 cut(s)	608
BbvI	GCAGC	6 cut(s)	156, 1024, 2152, 2353, 2356, 2416
BceAI	ACGGC	5 cut(s)	165, 999, 1010, 1998, 3012
BciT130I	CCWGG	6 cut(s)	134, 671, 1474, 2025, 2638, 2793
BclI	TGATCA	2 cut(s)	409, 2464
BcnI	CCSGG	1 cut(s)	1371
BfaI	CTAG	7 cut(s)	443, 953, 1403, 1583, 1847, 2375, 3084
BfmI	CTRYAG	2 cut(s)	567, 576
BfoI	RGCGCY	3 cut(s)	177, 259, 1114
BfrI	CTTAAG	1 cut(s)	770
BglI	GCCNNNNNGGC	2 cut(s)	186, 246
BglII	AGATCT	2 cut(s)	1285, 2602
Bme1390I	CCNGG	7 cut(s)	134, 671, 1371, 1474, 2025, 2638, 2793
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	904
BmgBI	CACGTC	1 cut(s)	971
BmgT120I	GGNCC	2 cut(s)	155, 265
BmiI	GGNNCC	7 cut(s)	266, 267, 498, 541, 729, 1506, 2298
BmrFI	CCNGG	7 cut(s)	134, 671, 1371, 1474, 2025, 2638, 2793
BmsI	GCATC	8 cut(s)	313, 1924, 2053, 2304, 2416, 2494, 2952, 2999
BmtI	GCTAGC	1 cut(s)	1850
BpiI	GAAGAC	2 cut(s)	1413, 2864
BpmI	CTGGAG	4 cut(s)	703, 1167, 2046, 2967
Bpu14I	TTCGAA	1 cut(s)	559
BpuMI	CCSGG	1 cut(s)	1371
BsaBI	GATNNNNATC	2 cut(s)	1539, 2787
BsaHI	GRCGYC	2 cut(s)	656, 1279
BsaI	GGTCTC	2 cut(s)	1257, 2379
BsaJI	CCNNGG	8 cut(s)	133, 166, 181, 211, 241, 670, 1738, 2637
BsaWI	WCCGGW	1 cut(s)	2097
BsaXI	ACNNNNNCTCC	2 cut(s)	2669, 2699
Bsc4I	CCNNNNNNNGG	8 cut(s)	1056, 1204, 1479, 1775, 1776, 2306, 2674, 3073
Bse1I	ACTGG	5 cut(s)	1104, 1150, 1192, 2558, 2950
Bse3DI	GCAATG	3 cut(s)	822, 1857, 2073
Bse8I	GATNNNNATC	2 cut(s)	1539, 2787
BseAI	TCCGGA	1 cut(s)	2097
BseBI	CCWGG	6 cut(s)	134, 671, 1474, 2025, 2638, 2793
BseDI	CCNNGG	8 cut(s)	133, 166, 181, 211, 241, 670, 1738, 2637
BseGI	GGATG	6 cut(s)	1534, 1699, 2501, 2788, 2931, 3082
BseJI	GATNNNNATC	2 cut(s)	1539, 2787
BseLI	CCNNNNNNNGG	8 cut(s)	1056, 1204, 1479, 1775, 1776, 2306, 2674, 3073
BseMI	GCAATG	3 cut(s)	822, 1857, 2073
BseMII	CTCAG	8 cut(s)	281, 772, 852, 860, 956, 975, 1019, 1740
BseNI	ACTGG	5 cut(s)	1104, 1150, 1192, 2558, 2950
BsePI	GCGCGC	1 cut(s)	25
BseRI	GAGGAG	4 cut(s)	68, 228, 231, 2267
BseX3I	CGGCCG	1 cut(s)	238
BseXI	GCAGC	6 cut(s)	156, 1024, 2152, 2353, 2356, 2416
BseYI	CCCAGC	4 cut(s)	1689, 2702, 2807, 3067
BsgI	GTGCAG	1 cut(s)	2744
Bsh1236I	CGCG	4 cut(s)	27, 168, 198, 225
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	7 cut(s)	141, 156, 210, 240, 434, 669, 2013
BsiEI	CGRYCG	1 cut(s)	241
BsiHKAI	GWGCWC	1 cut(s)	608
BsiHKCI	CYCGRG	1 cut(s)	904
BsiSI	CCGG	2 cut(s)	1370, 2098
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	8 cut(s)	1056, 1204, 1479, 1775, 1776, 2306, 2674, 3073
BsmBI	CGTCTC	1 cut(s)	1990
BsmFI	GGGAC	1 cut(s)	278
BsmI	GAATGC	2 cut(s)	845, 2753
BsnI	GGCC	7 cut(s)	141, 156, 210, 240, 434, 669, 2013
Bso31I	GGTCTC	2 cut(s)	1257, 2379
BsoBI	CYCGRG	1 cut(s)	904
Bsp119I	TTCGAA	1 cut(s)	559
Bsp1286I	GDGCHC	1 cut(s)	608
Bsp13I	TCCGGA	1 cut(s)	2097
Bsp1407I	TGTACA	2 cut(s)	2282, 3139
BspANI	GGCC	7 cut(s)	141, 156, 210, 240, 434, 669, 2013
BspCNI	CTCAG	8 cut(s)	282, 771, 853, 861, 955, 976, 1018, 1741
BspEI	TCCGGA	1 cut(s)	2097
BspFNI	CGCG	4 cut(s)	27, 168, 198, 225
BspLI	GGNNCC	7 cut(s)	266, 267, 498, 541, 729, 1506, 2298
BspMAI	CTGCAG	1 cut(s)	580
BspOI	GCTAGC	1 cut(s)	1850
BspPI	GGATC	9 cut(s)	1499, 1512, 1739, 2164, 2291, 2304, 2433, 2527, 2803
BspT104I	TTCGAA	1 cut(s)	559
BspTI	CTTAAG	1 cut(s)	770
BspTNI	GGTCTC	2 cut(s)	1257, 2379
BsrBI	CCGCTC	3 cut(s)	68, 281, 368
BsrDI	GCAATG	3 cut(s)	822, 1857, 2073
BsrGI	TGTACA	2 cut(s)	2282, 3139
BsrI	ACTGG	5 cut(s)	1104, 1150, 1192, 2558, 2950
BssECI	CCNNGG	8 cut(s)	133, 166, 181, 211, 241, 670, 1738, 2637
BssHII	GCGCGC	1 cut(s)	25
BssNI	GRCGYC	2 cut(s)	656, 1279
BssT1I	CCWWGG	1 cut(s)	1738
Bst2UI	CCWGG	6 cut(s)	134, 671, 1474, 2025, 2638, 2793
Bst4CI	ACNGT	5 cut(s)	691, 739, 1081, 1182, 1633
Bst6I	CTCTTC	1 cut(s)	2731
BstACI	GRCGYC	2 cut(s)	656, 1279
BstAFI	CTTAAG	1 cut(s)	770
BstAUI	TGTACA	2 cut(s)	2282, 3139
BstBI	TTCGAA	1 cut(s)	559
BstDEI	CTNAG	8 cut(s)	290, 758, 861, 869, 942, 984, 1005, 1749
BstDSI	CCRYGG	2 cut(s)	166, 181
BstEII	GGTNACC	1 cut(s)	2972
BstENI	CCTNNNNNAGG	1 cut(s)	1054
BstF5I	GGATG	6 cut(s)	1534, 1699, 2501, 2788, 2931, 3082
BstFNI	CGCG	4 cut(s)	27, 168, 198, 225
BstH2I	RGCGCY	3 cut(s)	177, 259, 1114
BstHHI	GCGC	6 cut(s)	27, 29, 176, 258, 1113, 3027
BstMCI	CGRYCG	1 cut(s)	241
BstNI	CCWGG	6 cut(s)	134, 671, 1474, 2025, 2638, 2793
BstNSI	RCATGY	1 cut(s)	704
BstPI	GGTNACC	1 cut(s)	2972
BstSCI	CCNGG	7 cut(s)	132, 669, 1369, 1472, 2023, 2636, 2791
BstSFI	CTRYAG	2 cut(s)	567, 576
BstUI	CGCG	4 cut(s)	27, 168, 198, 225
BstV1I	GCAGC	6 cut(s)	156, 1024, 2152, 2353, 2356, 2416
BstV2I	GAAGAC	2 cut(s)	1413, 2864
BstX2I	RGATCY	6 cut(s)	1285, 1504, 1744, 2296, 2438, 2602
BstYI	RGATCY	6 cut(s)	1285, 1504, 1744, 2296, 2438, 2602
BstZI	CGGCCG	1 cut(s)	238
BsuRI	GGCC	7 cut(s)	141, 156, 210, 240, 434, 669, 2013
BtgI	CCRYGG	2 cut(s)	166, 181
BtrI	CACGTC	1 cut(s)	971
BtsCI	GGATG	6 cut(s)	1534, 1699, 2501, 2788, 2931, 3082
BtsI	GCAGTG	1 cut(s)	2732
BtsIMutI	CAGTG	3 cut(s)	657, 2467, 2732
CaiI	CAGNNNCTG	1 cut(s)	575
CfoI	GCGC	6 cut(s)	27, 29, 176, 258, 1113, 3027
Cfr13I	GGNCC	2 cut(s)	155, 265
Cfr42I	CCGCGG	1 cut(s)	169
CseI	GACGC	2 cut(s)	231, 645
Csp6I	GTAC	2 cut(s)	2283, 3140
CviQI	GTAC	2 cut(s)	2283, 3140
DdeI	CTNAG	8 cut(s)	290, 758, 861, 869, 942, 984, 1005, 1749
DraI	TTTAAA	2 cut(s)	1941, 3048
EaeI	YGGCCR	4 cut(s)	139, 238, 667, 2011
EagI	CGGCCG	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	2731
EarI	CTCTTC	1 cut(s)	2731
Ecl136II	GAGCTC	1 cut(s)	606
EclXI	CGGCCG	1 cut(s)	238
Eco130I	CCWWGG	1 cut(s)	1738
Eco24I	GRGCYC	1 cut(s)	608
Eco31I	GGTCTC	2 cut(s)	1257, 2379
Eco32I	GATATC	1 cut(s)	2785
Eco47I	GGWCC	1 cut(s)	265
Eco47III	AGCGCT	2 cut(s)	257, 1112
Eco52I	CGGCCG	1 cut(s)	238
Eco53kI	GAGCTC	1 cut(s)	606
Eco57I	CTGAAG	2 cut(s)	633, 1968
Eco88I	CYCGRG	1 cut(s)	904
Eco91I	GGTNACC	1 cut(s)	2972
EcoICRI	GAGCTC	1 cut(s)	606
EcoNI	CCTNNNNNAGG	1 cut(s)	1054
EcoO109I	RGGNCCY	1 cut(s)	265
EcoO65I	GGTNACC	1 cut(s)	2972
EcoRI	GAATTC	1 cut(s)	1468
EcoRII	CCWGG	6 cut(s)	132, 669, 1472, 2023, 2636, 2791
EcoRV	GATATC	1 cut(s)	2785
EcoT14I	CCWWGG	1 cut(s)	1738
EcoT22I	ATGCAT	1 cut(s)	463
EcoT38I	GRGCYC	1 cut(s)	608
ErhI	CCWWGG	1 cut(s)	1738
Esp3I	CGTCTC	1 cut(s)	1990
FalI	AAGNNNNNCTT	2 cut(s)	1493, 1525
FaqI	GGGAC	1 cut(s)	278
FauI	CCCGC	1 cut(s)	173
FbaI	TGATCA	2 cut(s)	409, 2464
FblI	GTMKAC	2 cut(s)	566, 2628
FokI	GGATG	6 cut(s)	1541, 1706, 2508, 2775, 2918, 3089
FriOI	GRGCYC	1 cut(s)	608
FspBI	CTAG	7 cut(s)	443, 953, 1403, 1583, 1847, 2375, 3084
GlaI	GCGC	6 cut(s)	26, 28, 175, 257, 1112, 3026
GsaI	CCCAGC	4 cut(s)	1693, 2706, 2811, 3071
GsuI	CTGGAG	4 cut(s)	703, 1167, 2046, 2967
HaeII	RGCGCY	3 cut(s)	177, 259, 1114
HaeIII	GGCC	7 cut(s)	141, 156, 210, 240, 434, 669, 2013
HapII	CCGG	2 cut(s)	1370, 2098
HgaI	GACGC	2 cut(s)	231, 645
HhaI	GCGC	6 cut(s)	27, 29, 176, 258, 1113, 3027
Hin1I	GRCGYC	2 cut(s)	656, 1279
Hin6I	GCGC	6 cut(s)	25, 27, 174, 256, 1111, 3025
HinP1I	GCGC	6 cut(s)	25, 27, 174, 256, 1111, 3025
HincII	GTYRAC	2 cut(s)	1185, 2629
HindII	GTYRAC	2 cut(s)	1185, 2629
HindIII	AAGCTT	5 cut(s)	630, 836, 1587, 2484, 3041
HpaI	GTTAAC	1 cut(s)	1185
HpaII	CCGG	2 cut(s)	1370, 2098
HphI	GGTGA	4 cut(s)	920, 1085, 2462, 2547
Hpy166II	GTNNAC	9 cut(s)	567, 698, 1185, 1601, 2285, 2629, 2815, 3032, 3142
Hpy8I	GTNNAC	9 cut(s)	567, 698, 1185, 1601, 2285, 2629, 2815, 3032, 3142
Hpy99I	CGWCG	1 cut(s)	1281
HpyAV	CCTTC	8 cut(s)	469, 773, 787, 1277, 1473, 1495, 2486, 2987
HpyCH4III	ACNGT	5 cut(s)	691, 739, 1081, 1182, 1633
HpyCH4IV	ACGT	5 cut(s)	391, 970, 1279, 1379, 1410
HpyF3I	CTNAG	8 cut(s)	290, 758, 861, 869, 942, 984, 1005, 1749
HpySE526I	ACGT	5 cut(s)	391, 970, 1279, 1379, 1410
Hsp92I	GRCGYC	2 cut(s)	656, 1279
HspAI	GCGC	6 cut(s)	25, 27, 174, 256, 1111, 3025
KflI	GGGWCCC	1 cut(s)	265
Kpn2I	TCCGGA	1 cut(s)	2097
Ksp22I	TGATCA	2 cut(s)	409, 2464
KspAI	GTTAAC	1 cut(s)	1185
KspI	CCGCGG	1 cut(s)	169
Lsp1109I	GCAGC	6 cut(s)	156, 1024, 2152, 2353, 2356, 2416
LweI	GCATC	8 cut(s)	313, 1924, 2053, 2304, 2416, 2494, 2952, 2999
MaeI	CTAG	7 cut(s)	443, 953, 1403, 1583, 1847, 2375, 3084
MaeII	ACGT	5 cut(s)	391, 970, 1279, 1379, 1410
MaeIII	GTNAC	7 cut(s)	777, 1556, 1707, 2033, 2082, 2560, 2972
MbiI	CCGCTC	3 cut(s)	68, 281, 368
MfeI	CAATTG	1 cut(s)	2361
MflI	RGATCY	6 cut(s)	1285, 1504, 1744, 2296, 2438, 2602
MhlI	GDGCHC	1 cut(s)	608
MlsI	TGGCCA	1 cut(s)	669
MluCI	AATT	9 cut(s)	394, 1254, 1468, 1719, 1839, 2091, 2361, 2691, 3020
MluNI	TGGCCA	1 cut(s)	669
MlyI	GAGTC	7 cut(s)	69, 594, 601, 785, 1454, 1487, 2876
MmeI	TCCRAC	3 cut(s)	1473, 2044, 2134
Mox20I	TGGCCA	1 cut(s)	669
Mph1103I	ATGCAT	1 cut(s)	463
MroI	TCCGGA	1 cut(s)	2097
MroXI	GAANNNNTTC	1 cut(s)	837
MscI	TGGCCA	1 cut(s)	669
MslI	CAYNNNNRTG	2 cut(s)	456, 2960
Msp20I	TGGCCA	1 cut(s)	669
MspA1I	CMGCKG	1 cut(s)	168
MspCI	CTTAAG	1 cut(s)	770
MspI	CCGG	2 cut(s)	1370, 2098
MspR9I	CCNGG	7 cut(s)	134, 671, 1371, 1474, 2025, 2638, 2793
MunI	CAATTG	1 cut(s)	2361
Mva1269I	GAATGC	2 cut(s)	845, 2753
MvaI	CCWGG	6 cut(s)	134, 671, 1474, 2025, 2638, 2793
MvnI	CGCG	4 cut(s)	27, 168, 198, 225
NciI	CCSGG	1 cut(s)	1371
NheI	GCTAGC	1 cut(s)	1846
NlaIV	GGNNCC	7 cut(s)	266, 267, 498, 541, 729, 1506, 2298
NmeAIII	GCCGAG	3 cut(s)	236, 266, 331
NmuCI	GTSAC	1 cut(s)	777
NsiI	ATGCAT	1 cut(s)	463
NspI	RCATGY	1 cut(s)	704
NspV	TTCGAA	1 cut(s)	559
PauI	GCGCGC	1 cut(s)	25
PctI	GAATGC	2 cut(s)	845, 2753
PdmI	GAANNNNTTC	1 cut(s)	837
PfeI	GAWTC	9 cut(s)	556, 1066, 1093, 1103, 1734, 2056, 2189, 2453, 3013
PflMI	CCANNNNNTGG	3 cut(s)	1204, 2306, 2674
PfoI	TCCNGGA	2 cut(s)	1472, 2791
PleI	GAGTC	7 cut(s)	69, 593, 600, 784, 1453, 1487, 2876
PpsI	GAGTC	7 cut(s)	69, 593, 600, 784, 1453, 1487, 2876
PpuMI	RGGWCCY	1 cut(s)	265
Psp124BI	GAGCTC	1 cut(s)	608
Psp1406I	AACGTT	1 cut(s)	1379
Psp5II	RGGWCCY	1 cut(s)	265
Psp6I	CCWGG	6 cut(s)	132, 669, 1472, 2023, 2636, 2791
PspEI	GGTNACC	1 cut(s)	2972
PspFI	CCCAGC	4 cut(s)	1689, 2702, 2807, 3067
PspGI	CCWGG	6 cut(s)	132, 669, 1472, 2023, 2636, 2791
PspN4I	GGNNCC	7 cut(s)	266, 267, 498, 541, 729, 1506, 2298
PspPI	GGNCC	2 cut(s)	155, 265
PspPPI	RGGWCCY	1 cut(s)	265
PstI	CTGCAG	1 cut(s)	580
PstNI	CAGNNNCTG	1 cut(s)	575
PsuI	RGATCY	6 cut(s)	1285, 1504, 1744, 2296, 2438, 2602
PteI	GCGCGC	1 cut(s)	25
RsaI	GTAC	2 cut(s)	2284, 3141
RsaNI	GTAC	2 cut(s)	2283, 3140
RseI	CAYNNNNRTG	2 cut(s)	456, 2960
SacI	GAGCTC	1 cut(s)	608
SacII	CCGCGG	1 cut(s)	169
SalI	GTCGAC	1 cut(s)	2627
Sau96I	GGNCC	2 cut(s)	155, 265
SchI	GAGTC	7 cut(s)	69, 594, 601, 785, 1454, 1487, 2876
ScrFI	CCNGG	7 cut(s)	134, 671, 1371, 1474, 2025, 2638, 2793
SduI	GDGCHC	1 cut(s)	608
SfaNI	GCATC	8 cut(s)	313, 1924, 2053, 2304, 2416, 2494, 2952, 2999
SfcI	CTRYAG	2 cut(s)	567, 576
Sfr303I	CCGCGG	1 cut(s)	169
SfuI	TTCGAA	1 cut(s)	559
SgrBI	CCGCGG	1 cut(s)	169
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	2 cut(s)	456, 2960
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
Sse9I	AATT	9 cut(s)	394, 1254, 1468, 1719, 1839, 2091, 2361, 2691, 3020
SspI	AATATT	1 cut(s)	1809
SspMI	CTAG	7 cut(s)	443, 953, 1403, 1583, 1847, 2375, 3084
SstI	GAGCTC	1 cut(s)	608
StyD4I	CCNGG	7 cut(s)	132, 669, 1369, 1472, 2023, 2636, 2791
StyI	CCWWGG	1 cut(s)	1738
TaaI	ACNGT	5 cut(s)	691, 739, 1081, 1182, 1633
TaiI	ACGT	5 cut(s)	394, 973, 1282, 1382, 1413
TaqI	TCGA	8 cut(s)	559, 1096, 1276, 2214, 2383, 2612, 2628, 2781
TasI	AATT	9 cut(s)	394, 1254, 1468, 1719, 1839, 2091, 2361, 2691, 3020
TatI	WGTACW	2 cut(s)	2282, 3139
TfiI	GAWTC	9 cut(s)	556, 1066, 1093, 1103, 1734, 2056, 2189, 2453, 3013
TscAI	CASTG	3 cut(s)	657, 2467, 2732
TseFI	GTSAC	1 cut(s)	777
TseI	GCWGC	6 cut(s)	144, 1037, 2140, 2366, 2369, 2429
Tsp45I	GTSAC	1 cut(s)	777
TspDTI	ATGAA	9 cut(s)	441, 453, 524, 806, 1227, 1236, 1247, 1747, 2969
TspRI	CASTG	3 cut(s)	657, 2467, 2732
Van91I	CCANNNNNTGG	3 cut(s)	1204, 2306, 2674
Vha464I	CTTAAG	1 cut(s)	770
VpaK11BI	GGWCC	1 cut(s)	265
XagI	CCTNNNNNAGG	1 cut(s)	1054
XapI	RAATTY	2 cut(s)	1468, 2091
XbaI	TCTAGA	3 cut(s)	952, 1402, 1582
XceI	RCATGY	1 cut(s)	704
XcmI	CCANNNNNNNNNTGG	1 cut(s)	721
XmiI	GTMKAC	2 cut(s)	566, 2628
XmnI	GAANNNNTTC	1 cut(s)	837
XspI	CTAG	7 cut(s)	443, 953, 1403, 1583, 1847, 2375, 3084
ZraI	GACGTC	1 cut(s)	1280
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.