Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024791.1

Orthogroup ID

OG0007158

Physical Location & Seq

Genomic Coordinates Forward (+)

249 .. 2046

Gene Structure 1798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024791.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

atgcatgacttaacatcaacaagtcatggatctgctgaacccgaagcaggctggtttgatctgtttagtagccgctattggaaagttgttagtgttggtgcggcacttttcttgttccaacagttagctgggataaatgctgtggtttattattccacttctgtcttccgcagtgctggcataacatcagatgttgcagcaagtgctctcgttggagcagcaaatgtctttggcacagctgttgcatcatcactgatggacagacaaggaaggaaaagtcttctcctcattagttttggaggaatggctgcttcaatgttgctgcttgctttgtctttcacttggagtgttttggctccatattctggcaccctggctgttgctgggactgttctctatgtattgtccttttcgcttggcgctggtcctgtgcctgctcttcttctgccagagatatttgcttcaagaatcagagcaaaagcagtttctttgtcattgggcatgcactggatatcaaacttcgtcataggcctgtatttcttgagctttgtaaccaagttcgggatcagctcagtgtatctgggattctcggctgtttgtctgctggcggtcttgtacatagctggtaatgttgttgaaactaaagggcgatctttggaggacatagagcgtgcccttagcgttccaacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

230

Amino Acids

24.26

Weight (kDa)

8.73

Isoelectric Point (pI)

29.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16150 AT5G16150 AT5G16150
fragaria_vesca	FvH4_1g25970 FvH4_1g25970 FvH4_1g25970
malus_domestica	MD09G1254500.v1.1 MD17G1246900.v1.1
prunus_persica	Prupe.3G144600_v2.0.a1
pyrus_communis	pycom09g17020 pycom17g24850
rosa_chinensis	RchiOBHm_Chr3g0485241
rosa_laevigata	RLG00000023163
rosa_multiflora	Rmu_sc0005072.1_g000021 Rmu_sc0024791.1_g000001 Rmu_sc0038513.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397150
rosa_rugosa	Rorug03G0217000 Rorug03G0217100
rosa_samantha	Rh3AG266500 Rh3BG302200 Rh3CG300200 Rh3DG296400
rosa_wichuraiana	Rw0G000470 Rw3G023760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	368
AccB7I	CCANNNNNTGG	1 cut(s)	365
AciI	CCGC	4 cut(s)	73, 101, 169, 608
AclWI	GGATC	2 cut(s)	37, 572
AfaI	GTAC	1 cut(s)	617
AfiI	CCNNNNNNNGG	3 cut(s)	47, 365, 561
AgsI	TTSAA	3 cut(s)	315, 465, 638
AjnI	CCWGG	1 cut(s)	372
AluBI	AGCT	5 cut(s)	128, 239, 546, 570, 623
AluI	AGCT	5 cut(s)	128, 239, 546, 570, 623
Alw21I	GWGCWC	1 cut(s)	208
AlwI	GGATC	2 cut(s)	37, 572
AoxI	GGCC	1 cut(s)	529
ApeKI	GCWGC	4 cut(s)	197, 218, 308, 322
AspLEI	GCGC	1 cut(s)	422
AspS9I	GGNCC	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	425
BaeGI	GKGCMC	1 cut(s)	676
BanI	GGYRCC	1 cut(s)	368
BbsI	GAAGAC	2 cut(s)	157, 272
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	4 cut(s)	209, 230, 295, 309
BccI	CCATC	1 cut(s)	250
BciT130I	CCWGG	1 cut(s)	374
BfoI	RGCGCY	1 cut(s)	423
BisI	GCNGC	6 cut(s)	73, 102, 198, 219, 309, 323
BlsI	GCNGC	6 cut(s)	74, 103, 199, 220, 310, 324
Bme1390I	CCNGG	1 cut(s)	374
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	2 cut(s)	357, 370
BmrFI	CCNGG	1 cut(s)	374
BmsI	GCATC	1 cut(s)	254
BpiI	GAAGAC	2 cut(s)	157, 272
Bpu10I	CCTNAGC	1 cut(s)	677
BpuEI	CTTGAG	1 cut(s)	562
BsaJI	CCNNGG	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 365, 561
Bse1I	ACTGG	1 cut(s)	512
BseBI	CCWGG	1 cut(s)	374
BseDI	CCNNGG	1 cut(s)	372
BseLI	CCNNNNNNNGG	3 cut(s)	47, 365, 561
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	1 cut(s)	512
BseRI	GAGGAG	1 cut(s)	275
BseSI	GKGCMC	1 cut(s)	676
BseXI	GCAGC	4 cut(s)	209, 230, 295, 309
BseYI	CCCAGC	2 cut(s)	128, 383
BshFI	GGCC	1 cut(s)	531
BshNI	GGYRCC	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	3 cut(s)	47, 365, 561
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	1 cut(s)	531
Bsp1286I	GDGCHC	2 cut(s)	208, 676
Bsp1407I	TGTACA	1 cut(s)	615
Bsp143I	GATC	4 cut(s)	29, 58, 564, 650
BspACI	CCGC	4 cut(s)	73, 101, 169, 608
BspANI	GGCC	1 cut(s)	531
BspCNI	CTCAG	1 cut(s)	584
BspLI	GGNNCC	2 cut(s)	357, 370
BspPI	GGATC	2 cut(s)	37, 572
BspQI	GCTCTTC	1 cut(s)	444
BspT107I	GGYRCC	1 cut(s)	368
BsrGI	TGTACA	1 cut(s)	615
BsrI	ACTGG	1 cut(s)	512
BssECI	CCNNGG	1 cut(s)	372
BssMI	GATC	4 cut(s)	29, 58, 564, 650
Bst2UI	CCWGG	1 cut(s)	374
Bst4CI	ACNGT	2 cut(s)	123, 391
Bst6I	CTCTTC	1 cut(s)	444
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstAUI	TGTACA	1 cut(s)	615
BstC8I	GCNNGC	7 cut(s)	49, 178, 327, 435, 503, 606, 672
BstDEI	CTNAG	2 cut(s)	571, 677
BstH2I	RGCGCY	1 cut(s)	423
BstHHI	GCGC	1 cut(s)	422
BstKTI	GATC	4 cut(s)	32, 61, 567, 653
BstMBI	GATC	4 cut(s)	29, 58, 564, 650
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 203
BstNI	CCWGG	1 cut(s)	374
BstNSI	RCATGY	1 cut(s)	505
BstSCI	CCNGG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	676
BstV1I	GCAGC	4 cut(s)	209, 230, 295, 309
BstV2I	GAAGAC	2 cut(s)	157, 272
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
BsuRI	GGCC	1 cut(s)	531
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	4 cut(s)	178, 251, 505, 579
Cac8I	GCNNGC	7 cut(s)	49, 178, 327, 435, 503, 606, 672
CfoI	GCGC	1 cut(s)	422
Cfr13I	GGNCC	1 cut(s)	425
Csp6I	GTAC	1 cut(s)	616
CviAII	CATG	3 cut(s)	5, 26, 502
CviQI	GTAC	1 cut(s)	616
DdeI	CTNAG	2 cut(s)	571, 677
DpnI	GATC	4 cut(s)	31, 60, 566, 652
DpnII	GATC	4 cut(s)	29, 58, 564, 650
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Eco147I	AGGCCT	1 cut(s)	531
Eco32I	GATATC	1 cut(s)	513
Eco47I	GGWCC	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	372
EcoRV	GATATC	1 cut(s)	513
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	8, 29, 505
FaiI	YATR	9 cut(s)	6, 27, 182, 361, 399, 503, 527, 620, 665
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	3 cut(s)	4, 25, 501
Fnu4HI	GCNGC	6 cut(s)	73, 102, 198, 219, 309, 323
Fsp4HI	GCNGC	6 cut(s)	73, 102, 198, 219, 309, 323
GlaI	GCGC	1 cut(s)	421
GluI	GCNGC	6 cut(s)	73, 102, 198, 219, 309, 323
GsaI	CCCAGC	2 cut(s)	132, 387
HaeII	RGCGCY	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	531
HhaI	GCGC	1 cut(s)	422
Hin1II	CATG	3 cut(s)	8, 29, 505
Hin6I	GCGC	1 cut(s)	420
HinP1I	GCGC	1 cut(s)	420
HinfI	GANTC	2 cut(s)	468, 585
Hpy188I	TCNGA	2 cut(s)	190, 473
Hpy188III	TCNNGA	3 cut(s)	465, 541, 562
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	2 cut(s)	123, 391
HpyCH4V	TGCA	4 cut(s)	4, 197, 245, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 203
HpyF3I	CTNAG	2 cut(s)	571, 677
Hsp92II	CATG	3 cut(s)	8, 29, 505
HspAI	GCGC	1 cut(s)	420
Kzo9I	GATC	4 cut(s)	29, 58, 564, 650
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	2 cut(s)	215, 361
Lsp1109I	GCAGC	4 cut(s)	209, 230, 295, 309
LweI	GCATC	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	550
MalI	GATC	4 cut(s)	31, 60, 566, 652
MboI	GATC	4 cut(s)	29, 58, 564, 650
MboII	GAAGA	4 cut(s)	157, 272, 431, 434
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	2 cut(s)	208, 676
MmeI	TCCRAC	2 cut(s)	142, 193
MnlI	CCTC	3 cut(s)	293, 296, 652
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	374
MvaI	CCWGG	1 cut(s)	374
MwoI	GCNNNNNNNGC	2 cut(s)	177, 203
NdeII	GATC	4 cut(s)	29, 58, 564, 650
NlaIII	CATG	3 cut(s)	8, 29, 505
NlaIV	GGNNCC	2 cut(s)	357, 370
NmeAIII	GCCGAG	1 cut(s)	569
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	505
PaeI	GCATGC	1 cut(s)	505
PceI	AGGCCT	1 cut(s)	531
PciSI	GCTCTTC	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	468, 585
PflMI	CCANNNNNTGG	1 cut(s)	365
PkrI	GCNGC	6 cut(s)	74, 103, 199, 220, 310, 324
Psp6I	CCWGG	1 cut(s)	372
PspFI	CCCAGC	2 cut(s)	128, 383
PspGI	CCWGG	1 cut(s)	372
PspN4I	GGNNCC	2 cut(s)	357, 370
PspPI	GGNCC	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	29
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	617
RsaNI	GTAC	1 cut(s)	616
SapI	GCTCTTC	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	11
SatI	GCNGC	6 cut(s)	73, 102, 198, 219, 309, 323
Sau3AI	GATC	4 cut(s)	29, 58, 564, 650
Sau96I	GGNCC	1 cut(s)	425
ScrFI	CCNGG	1 cut(s)	374
SduI	GDGCHC	2 cut(s)	208, 676
SetI	ASST	6 cut(s)	130, 241, 548, 572, 625, 692
SfaNI	GCATC	1 cut(s)	254
SinI	GGWCC	1 cut(s)	425
SmlI	CTYRAG	1 cut(s)	541
SmoI	CTYRAG	1 cut(s)	541
SphI	GCATGC	1 cut(s)	505
SseBI	AGGCCT	1 cut(s)	531
SsiI	CCGC	4 cut(s)	73, 101, 169, 608
StuI	AGGCCT	1 cut(s)	531
StyD4I	CCNGG	1 cut(s)	372
TaaI	ACNGT	2 cut(s)	123, 391
TatI	WGTACW	1 cut(s)	615
TauI	GCSGC	2 cut(s)	75, 104
TfiI	GAWTC	2 cut(s)	468, 585
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TscAI	CASTG	4 cut(s)	178, 258, 512, 579
TseI	GCWGC	4 cut(s)	197, 218, 308, 322
TspRI	CASTG	4 cut(s)	178, 258, 512, 579
Van91I	CCANNNNNTGG	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	425
XceI	RCATGY	1 cut(s)	505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	125
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.