Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0007158

Physical Location & Seq

Genomic Coordinates Reverse (-)

30050465 .. 30055858

Gene Structure 5394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G023760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGCAAGCGTCAACTTATGGTTCGATCAGAGAGAAGTTGGTTTTCGGGGTCCAAGTCAGACAGCAAAGGAAGGTGTTGGGGTCAAGTGCAGGGTTAAAGAATCTGCGTATGACAGATAAGGCCACTGGCTTTGGTGGATTGAAGCTCACTTCTGCGCCTATGGGAGCCAACCTTGGACGTCTTGATGGGATTTCCATGACTTCCTTGAAACCCAGATCAGTCAAGGCTCACGCTGCTTCTGATGGAGACGTTGAGAATCTTGTTCCTCCCAAGCCTCAGGTCAAATCTTCTGGAATAGTGTTGCCATTTGTTGGTGTTGCCTGTCTTGGAGCCATTTTATTTGGTTATCATCTCGGGGTGGTAAATGGTGCTCTTGAGTACCTGTCGAAGGATCTTGGTATTACTGAAAACGTTGCATTAAAAGGGTGGGTGGTTAGCACACTTCTAGCGGGTGCCACAGTTGGATCTTTCACTGGTGGAACATTGGCTGACAAGTTTGGGAGAACTAGAACTTTTCAACTTGATGCAATTCCACTAACGATTGGAGCATTTTTATGTGCCACAGCCCAGAGTGTGGAGCAAATGATAGTTGGCCGCTTACTTGCTGGCATTGGAATCGGCATCTCATCGGCTATTGTCCCACTTTACATTTCTGAGATCTCCCCAACTGAAATTCGGGGCGCACTTGGATCTGTAAACCAGCTTTTTATATGTCTTGGAATCCTTGGAGCACTGGTGGCTGGATTACCTTTATCAGCAAATCCGTTATGGTGGAGGACAATGTTTGGTATTGCAATAGTTCCCTCTGTTCTATTGGCTTTAGGAATGGCTGTTTCACCCGAAAGTCCTAGATGGCTCTTACAGCAAGGACAAACTTCTCAGGCTGAAAAGGTTATAAAAACATTATACGGAAAAGAGAGAGTAACTGAGGTGATGCATGACTTAACATCAACAAGTCATGGATCTGCTGAACCCGAAGCAGGCTGGTTTGATCTGTTTAGTAGCCGCTATTGGAAAGTTGTTAGTGTTGGTGCAGCACTTTTCTTGTTCCAACAGTTAGCTGGGATAAATGCTGTGGTTTATTATTCCACTTCTGTCTTCCGCAGTGCTGGCATAACATCAGATGTTGCAGCAAGTGCTCTCGCTGCTTCAATGTTGCTGCTTGCTTTGTCTTTCACTTGGAGTGTTTTGGCTCCATATTCTGGCACCCTGGCTGTCGCTGGGACTGTTCTCTATGTATTGTCCTTTTCGCTTGGCGCTGGTCCTGTGCCTGCTCTTCTTCTGCCAGAGATATTTGCTTCAAGAATCAGAGCAAAAGCAGTTTCTTTGTCATTGGGCATGCACTGGATATCAAACTTCGTCATAGGCCTGTATTTCTTGAGCTTTGTAACCAAGTTCGGGATCAGCTCAGTGTATCTGGGATTCTCGGCTGTTTGTCTGCTTGCGGTCTTGTACATAGCTGGTAATGTTGTTGAAACTAAAGGGCGATCTTTGGAGGACATAGAGCGTGCCCTTAGCGTTCCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

509

Amino Acids

53.56

Weight (kDa)

9.38

Isoelectric Point (pI)

29.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	106 - 389	2.1e-69	Sugar (and other) transporter
MFS_1	PF07690	108 - 421	1.5e-20	Major Facilitator Superfamily
Sugar_tr	PF00083	384 - 504	1.1e-21	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16150 AT5G16150 AT5G16150
fragaria_vesca	FvH4_1g25970 FvH4_1g25970 FvH4_1g25970
malus_domestica	MD09G1254500.v1.1 MD17G1246900.v1.1
prunus_persica	Prupe.3G144600_v2.0.a1
pyrus_communis	pycom09g17020 pycom17g24850
rosa_chinensis	RchiOBHm_Chr3g0485241
rosa_laevigata	RLG00000023163
rosa_multiflora	Rmu_sc0005072.1_g000021 Rmu_sc0024791.1_g000001 Rmu_sc0038513.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397150
rosa_rugosa	Rorug03G0217000 Rorug03G0217100
rosa_samantha	Rh3AG266500 Rh3BG302200 Rh3CG300200 Rh3DG296400
rosa_wichuraiana	Rw0G000470 Rw3G023760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	896
AatII	GACGTC	1 cut(s)	181
AccB1I	GGYRCC	2 cut(s)	452, 1205
AccB7I	CCANNNNNTGG	3 cut(s)	311, 574, 1202
AciI	CCGC	5 cut(s)	449, 595, 1006, 1102, 1445
AclI	AACGTT	1 cut(s)	411
AclWI	GGATC	5 cut(s)	399, 472, 697, 970, 1409
AcoI	YGGCCR	1 cut(s)	592
AcsI	RAATTY	1 cut(s)	672
AcyI	GRCGYC	1 cut(s)	178
AfaI	GTAC	2 cut(s)	380, 1454
AfiI	CCNNNNNNNGG	6 cut(s)	311, 388, 574, 980, 1202, 1398
AgsI	TTSAA	6 cut(s)	142, 208, 518, 1152, 1302, 1475
AjnI	CCWGG	1 cut(s)	1209
AluBI	AGCT	6 cut(s)	145, 703, 1061, 1383, 1407, 1460
AluI	AGCT	6 cut(s)	145, 703, 1061, 1383, 1407, 1460
Alw21I	GWGCWC	3 cut(s)	373, 733, 1141
Alw26I	GTCTC	1 cut(s)	240
AlwI	GGATC	5 cut(s)	399, 472, 697, 970, 1409
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	3 cut(s)	120, 592, 1366
ApeKI	GCWGC	5 cut(s)	233, 1034, 1130, 1145, 1159
ApoI	RAATTY	1 cut(s)	672
AspLEI	GCGC	3 cut(s)	157, 683, 1259
AspS9I	GGNCC	2 cut(s)	49, 1262
AsuHPI	GGTGA	2 cut(s)	828, 943
AvaI	CYCGRG	1 cut(s)	353
AvaII	GGWCC	2 cut(s)	49, 1262
AxyI	CCTNAGG	1 cut(s)	276
BaeGI	GKGCMC	1 cut(s)	1513
BanI	GGYRCC	2 cut(s)	452, 1205
BbsI	GAAGAC	1 cut(s)	1090
Bbv12I	GWGCWC	3 cut(s)	373, 733, 1141
BbvI	GCAGC	5 cut(s)	220, 1046, 1132, 1142, 1146
BccI	CCATC	3 cut(s)	179, 236, 846
BcgI	CGANNNNNNTGC	2 cut(s)	598, 632
BciT130I	CCWGG	1 cut(s)	1211
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	3 cut(s)	446, 507, 849
BfoI	RGCGCY	1 cut(s)	1260
BglII	AGATCT	1 cut(s)	657
BisI	GCNGC	7 cut(s)	234, 595, 1006, 1035, 1131, 1146, 1160
BlsI	GCNGC	7 cut(s)	235, 596, 1007, 1036, 1132, 1147, 1161
Bme1390I	CCNGG	1 cut(s)	1211
Bme18I	GGWCC	2 cut(s)	49, 1262
BmeT110I	CYCGRG	1 cut(s)	353
BmgT120I	GGNCC	2 cut(s)	49, 1262
BmiI	GGNNCC	6 cut(s)	50, 166, 331, 454, 1194, 1207
BmrFI	CCNGG	1 cut(s)	1211
BmsI	GCATC	3 cut(s)	514, 630, 924
BpiI	GAAGAC	1 cut(s)	1090
Bpu10I	CCTNAGC	1 cut(s)	1514
BpuEI	CTTGAG	2 cut(s)	395, 1399
BsaHI	GRCGYC	1 cut(s)	178
BsaJI	CCNNGG	3 cut(s)	172, 724, 1209
BsaXI	ACNNNNNCTCC	2 cut(s)	720, 750
Bsc4I	CCNNNNNNNGG	6 cut(s)	311, 388, 574, 980, 1202, 1398
Bse1I	ACTGG	4 cut(s)	130, 478, 738, 1349
Bse21I	CCTNAGG	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	1211
BseDI	CCNNGG	3 cut(s)	172, 724, 1209
BseLI	CCNNNNNNNGG	6 cut(s)	311, 388, 574, 980, 1202, 1398
BseMII	CTCAG	5 cut(s)	290, 645, 893, 918, 1422
BseNI	ACTGG	4 cut(s)	130, 478, 738, 1349
BseSI	GKGCMC	1 cut(s)	1513
BseXI	GCAGC	5 cut(s)	220, 1046, 1132, 1142, 1146
BseYI	CCCAGC	2 cut(s)	1061, 1220
BsgI	GTGCAG	2 cut(s)	108, 1053
BshFI	GGCC	3 cut(s)	122, 594, 1368
BshNI	GGYRCC	2 cut(s)	452, 1205
BsiHKAI	GWGCWC	3 cut(s)	373, 733, 1141
BsiHKCI	CYCGRG	1 cut(s)	353
BslFI	GGGAC	2 cut(s)	623, 1237
BslI	CCNNNNNNNGG	6 cut(s)	311, 388, 574, 980, 1202, 1398
BsmAI	GTCTC	1 cut(s)	240
BsmBI	CGTCTC	1 cut(s)	240
BsmFI	GGGAC	2 cut(s)	623, 1237
BsnI	GGCC	3 cut(s)	122, 594, 1368
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	4 cut(s)	373, 733, 1141, 1513
Bsp1407I	TGTACA	1 cut(s)	1452
BspACI	CCGC	5 cut(s)	449, 595, 1006, 1102, 1445
BspANI	GGCC	3 cut(s)	122, 594, 1368
BspCNI	CTCAG	5 cut(s)	289, 646, 892, 919, 1421
BspLI	GGNNCC	6 cut(s)	50, 166, 331, 454, 1194, 1207
BspPI	GGATC	5 cut(s)	399, 472, 697, 970, 1409
BspQI	GCTCTTC	1 cut(s)	1281
BspT107I	GGYRCC	2 cut(s)	452, 1205
BsrGI	TGTACA	1 cut(s)	1452
BsrI	ACTGG	4 cut(s)	130, 478, 738, 1349
BssECI	CCNNGG	3 cut(s)	172, 724, 1209
BssNI	GRCGYC	1 cut(s)	178
BssT1I	CCWWGG	2 cut(s)	172, 724
Bst2UI	CCWGG	1 cut(s)	1211
Bst4CI	ACNGT	3 cut(s)	460, 1056, 1228
Bst6I	CTCTTC	1 cut(s)	1281
BstACI	GRCGYC	1 cut(s)	178
BstAPI	GCANNNNNTGC	1 cut(s)	1136
BstAUI	TGTACA	1 cut(s)	1452
BstC8I	GCNNGC	9 cut(s)	6, 607, 982, 1111, 1164, 1272, 1340, 1443, 1509
BstDEI	CTNAG	6 cut(s)	276, 654, 879, 927, 1408, 1514
BstENI	CCTNNNNNAGG	1 cut(s)	386
BstH2I	RGCGCY	1 cut(s)	1260
BstHHI	GCGC	3 cut(s)	157, 683, 1259
BstMAI	GTCTC	1 cut(s)	240
BstMWI	GCNNNNNNNGC	6 cut(s)	233, 737, 862, 1110, 1136, 1145
BstNI	CCWGG	1 cut(s)	1211
BstNSI	RCATGY	1 cut(s)	1342
BstSCI	CCNGG	1 cut(s)	1209
BstSLI	GKGCMC	1 cut(s)	1513
BstV1I	GCAGC	5 cut(s)	220, 1046, 1132, 1142, 1146
BstV2I	GAAGAC	1 cut(s)	1090
BstX2I	RGATCY	5 cut(s)	391, 464, 657, 689, 962
BstYI	RGATCY	5 cut(s)	391, 464, 657, 689, 962
Bsu36I	CCTNAGG	1 cut(s)	276
BsuRI	GGCC	3 cut(s)	122, 594, 1368
BtsI	GCAGTG	1 cut(s)	1111
BtsIMutI	CAGTG	6 cut(s)	123, 471, 731, 1111, 1342, 1416
Cac8I	GCNNGC	9 cut(s)	6, 607, 982, 1111, 1164, 1272, 1340, 1443, 1509
CfoI	GCGC	3 cut(s)	157, 683, 1259
Cfr13I	GGNCC	2 cut(s)	49, 1262
Csp6I	GTAC	2 cut(s)	379, 1453
CspCI	CAANNNNNGTGG	2 cut(s)	112, 147
CviAII	CATG	4 cut(s)	196, 938, 959, 1339
CviQI	GTAC	2 cut(s)	379, 1453
DdeI	CTNAG	6 cut(s)	276, 654, 879, 927, 1408, 1514
EaeI	YGGCCR	1 cut(s)	592
Eam1104I	CTCTTC	1 cut(s)	1281
EarI	CTCTTC	1 cut(s)	1281
Eco130I	CCWWGG	2 cut(s)	172, 724
Eco147I	AGGCCT	1 cut(s)	1368
Eco32I	GATATC	1 cut(s)	1350
Eco47I	GGWCC	2 cut(s)	49, 1262
Eco81I	CCTNAGG	1 cut(s)	276
Eco88I	CYCGRG	1 cut(s)	353
EcoNI	CCTNNNNNAGG	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	1209
EcoRV	GATATC	1 cut(s)	1350
EcoT14I	CCWWGG	2 cut(s)	172, 724
EcoT22I	ATGCAT	1 cut(s)	939
ErhI	CCWWGG	2 cut(s)	172, 724
Esp3I	CGTCTC	1 cut(s)	240
FaeI	CATG	4 cut(s)	199, 941, 962, 1342
FaqI	GGGAC	2 cut(s)	623, 1237
FatI	CATG	4 cut(s)	195, 937, 958, 1338
FauI	CCCGC	1 cut(s)	442
Fnu4HI	GCNGC	7 cut(s)	234, 595, 1006, 1035, 1131, 1146, 1160
Fsp4HI	GCNGC	7 cut(s)	234, 595, 1006, 1035, 1131, 1146, 1160
FspBI	CTAG	3 cut(s)	446, 507, 849
GlaI	GCGC	3 cut(s)	156, 682, 1258
GluI	GCNGC	7 cut(s)	234, 595, 1006, 1035, 1131, 1146, 1160
GsaI	CCCAGC	2 cut(s)	1065, 1224
HaeII	RGCGCY	1 cut(s)	1260
HaeIII	GGCC	3 cut(s)	122, 594, 1368
HhaI	GCGC	3 cut(s)	157, 683, 1259
Hin1I	GRCGYC	1 cut(s)	178
Hin1II	CATG	4 cut(s)	199, 941, 962, 1342
Hin6I	GCGC	3 cut(s)	155, 681, 1257
HinP1I	GCGC	3 cut(s)	155, 681, 1257
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	6 cut(s)	100, 256, 615, 720, 1305, 1422
HphI	GGTGA	2 cut(s)	828, 943
Hpy166II	GTNNAC	2 cut(s)	12, 697
Hpy188I	TCNGA	6 cut(s)	29, 59, 241, 655, 1123, 1310
Hpy188III	TCNNGA	6 cut(s)	182, 291, 374, 1302, 1378, 1399
Hpy8I	GTNNAC	2 cut(s)	12, 697
HpyAV	CCTTC	2 cut(s)	64, 382
HpyCH4III	ACNGT	3 cut(s)	460, 1056, 1228
HpyCH4IV	ACGT	3 cut(s)	178, 249, 411
HpyCH4V	TGCA	9 cut(s)	4, 89, 416, 527, 794, 937, 1034, 1130, 1342
HpyF10VI	GCNNNNNNNGC	6 cut(s)	233, 737, 862, 1110, 1136, 1145
HpyF3I	CTNAG	6 cut(s)	276, 654, 879, 927, 1408, 1514
HpySE526I	ACGT	3 cut(s)	178, 249, 411
Hsp92I	GRCGYC	1 cut(s)	178
Hsp92II	CATG	4 cut(s)	199, 941, 962, 1342
HspAI	GCGC	3 cut(s)	155, 681, 1257
LguI	GCTCTTC	1 cut(s)	1281
LmnI	GCTCC	6 cut(s)	164, 329, 545, 577, 728, 1198
Lsp1109I	GCAGC	5 cut(s)	220, 1046, 1132, 1142, 1146
LweI	GCATC	3 cut(s)	514, 630, 924
MaeI	CTAG	3 cut(s)	446, 507, 849
MaeII	ACGT	3 cut(s)	178, 249, 411
MaeIII	GTNAC	2 cut(s)	922, 1387
MboII	GAAGA	4 cut(s)	279, 1090, 1268, 1271
MflI	RGATCY	5 cut(s)	391, 464, 657, 689, 962
MhlI	GDGCHC	4 cut(s)	373, 733, 1141, 1513
MluCI	AATT	2 cut(s)	528, 672
MmeI	TCCRAC	2 cut(s)	442, 1075
MnlI	CCTC	6 cut(s)	276, 285, 768, 814, 922, 1489
Mph1103I	ATGCAT	1 cut(s)	939
MseI	TTAA	3 cut(s)	95, 419, 944
MslI	CAYNNNNRTG	1 cut(s)	553
MspR9I	CCNGG	1 cut(s)	1211
MvaI	CCWGG	1 cut(s)	1211
MwoI	GCNNNNNNNGC	6 cut(s)	233, 737, 862, 1110, 1136, 1145
NlaIII	CATG	4 cut(s)	199, 941, 962, 1342
NlaIV	GGNNCC	6 cut(s)	50, 166, 331, 454, 1194, 1207
NmeAIII	GCCGAG	1 cut(s)	1406
NsiI	ATGCAT	1 cut(s)	939
NspI	RCATGY	1 cut(s)	1342
PaeI	GCATGC	1 cut(s)	1342
PceI	AGGCCT	1 cut(s)	1368
PciSI	GCTCTTC	1 cut(s)	1281
PfeI	GAWTC	6 cut(s)	100, 256, 615, 720, 1305, 1422
PflMI	CCANNNNNTGG	3 cut(s)	311, 574, 1202
PkrI	GCNGC	7 cut(s)	235, 596, 1007, 1036, 1132, 1147, 1161
PsiI	TTATAA	1 cut(s)	896
Psp1406I	AACGTT	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	1209
PspFI	CCCAGC	2 cut(s)	1061, 1220
PspGI	CCWGG	1 cut(s)	1209
PspN4I	GGNNCC	6 cut(s)	50, 166, 331, 454, 1194, 1207
PspPI	GGNCC	2 cut(s)	49, 1262
PsuI	RGATCY	5 cut(s)	391, 464, 657, 689, 962
RsaI	GTAC	2 cut(s)	380, 1454
RsaNI	GTAC	2 cut(s)	379, 1453
RseI	CAYNNNNRTG	1 cut(s)	553
SapI	GCTCTTC	1 cut(s)	1281
SaqAI	TTAA	3 cut(s)	95, 419, 944
SatI	GCNGC	7 cut(s)	234, 595, 1006, 1035, 1131, 1146, 1160
Sau96I	GGNCC	2 cut(s)	49, 1262
ScrFI	CCNGG	1 cut(s)	1211
SduI	GDGCHC	4 cut(s)	373, 733, 1141, 1513
SfaNI	GCATC	3 cut(s)	514, 630, 924
SinI	GGWCC	2 cut(s)	49, 1262
SmiMI	CAYNNNNRTG	1 cut(s)	553
SmlI	CTYRAG	2 cut(s)	374, 1378
SmoI	CTYRAG	2 cut(s)	374, 1378
SphI	GCATGC	1 cut(s)	1342
Sse9I	AATT	2 cut(s)	528, 672
SseBI	AGGCCT	1 cut(s)	1368
SsiI	CCGC	5 cut(s)	449, 595, 1006, 1102, 1445
SspMI	CTAG	3 cut(s)	446, 507, 849
StuI	AGGCCT	1 cut(s)	1368
StyD4I	CCNGG	1 cut(s)	1209
StyI	CCWWGG	2 cut(s)	172, 724
TaaI	ACNGT	3 cut(s)	460, 1056, 1228
TaiI	ACGT	3 cut(s)	181, 252, 414
TaqI	TCGA	2 cut(s)	23, 386
TasI	AATT	2 cut(s)	528, 672
TatI	WGTACW	1 cut(s)	1452
TauI	GCSGC	2 cut(s)	597, 1008
TfiI	GAWTC	6 cut(s)	100, 256, 615, 720, 1305, 1422
Tru1I	TTAA	3 cut(s)	95, 419, 944
Tru9I	TTAA	3 cut(s)	95, 419, 944
TscAI	CASTG	6 cut(s)	130, 478, 738, 1111, 1349, 1416
TseI	GCWGC	5 cut(s)	233, 1034, 1130, 1145, 1159
TspGWI	ACGGA	2 cut(s)	753, 924
TspRI	CASTG	6 cut(s)	130, 478, 738, 1111, 1349, 1416
Van91I	CCANNNNNTGG	3 cut(s)	311, 574, 1202
VpaK11BI	GGWCC	2 cut(s)	49, 1262
XagI	CCTNNNNNAGG	1 cut(s)	386
XapI	RAATTY	1 cut(s)	672
XceI	RCATGY	1 cut(s)	1342
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1058
XspI	CTAG	3 cut(s)	446, 507, 849
ZraI	GACGTC	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.