Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0007158

Physical Location & Seq

Genomic Coordinates Forward (+)

30133953 .. 30140042

Gene Structure 6090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG266500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGCAAGCGTCAACTTATGGTTCGATCAGAGAGAAGTTGGTTTTCGGGGTCCAAGTCAAACAGCAAAGGAAGGTGTTGGGGTCAAGTACAGGGTTAAAGAATCTGTGTATGACAGATAAGGCCACTGGCTTTGGTGGATTGAAGCTCACTTCTGCGGCTATGGGAGCCAACCTTGGACGTCTTGATGGGATTTCCATGACTTCCTTGAAACCCAGATCAGTCAAGGCTCACGCTGCTTCTGACGCAGATGGAGATGTTGAGAATCTTGTTCCTCCCAAGCCTCAGGTCAAATCTTCTGGAATAGTGTTGCCATTTGTTGGTGTTGCCTGTCTTGGAGCCATTTTATTTGGTTATCATCTCGGGGTGGTAAATGGTGCTCTTGAGTACCTGTCGAAGGATCTTGGTATTACTGAAAACGTTGCATTAAAAGGGTGGGTGGTTAGCACACTTCTAGCTGGTGCCACAGTTGGATCTTTCACTGGTGGAACATTGGCCGACAAGTTTGGGAGAACTAGAACTTTTCAACTTGATGCAATTCCACTAACGATTGGAGCATTTTTATGTGCCACAGCACAGAGTGTGGAGCAAATGATAGTTGGCCGCTTACTTGCTGGCATTGGAATCGGCATCTCATCGGCTATTGTCCCACTTTACATTTCTGAGATCTCCCCAACTGAAATTCGGGGCGCACTTGGATCTGTAAACCAGCTTTTTATATGTCTTGGAATCCTTGGAGCACTGGTGGCTGGATTACCTTTATCAGCAAATCCGTTATGGTGGAGGACAATGTTTGGTATTGCAATAGTTCCCTCTGTTCTATTGGCTTTAGGAATGGCTGTTTCACCCGAAAGTCCTAGATGGCTCTTACAGCAAGGAAAAACTTCTCAGGCTGAAAAGGTTATAAAAACATTATACGGAAAAGAGAGAGTAACTGAGGTAATGCATGACTTAACATCAACAAGTCATGGATCTGCTGAACCCGAAGCAGGCTGGTTTGATCTGTTTAGTAGCCGCTATTGGAAAGTTGTTAGTGTTGGTGCGGCACTTTTCTTGTTCCAACAGTTAGCTGGGATAAATGCTGTGGTTTATTATTCCACTTCTGTCTTCCGCAGTGCTGGCATAACATCAGATGTTGCAGCAAGTGCTCTCGTTGGAGCAGCAAATGTCTTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

391

Amino Acids

40.86

Weight (kDa)

9.2

Isoelectric Point (pI)

27.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	108 - 390	1.7e-71	Sugar (and other) transporter
MFS_1	PF07690	110 - 387	3.2e-22	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16150 AT5G16150 AT5G16150
fragaria_vesca	FvH4_1g25970 FvH4_1g25970 FvH4_1g25970
malus_domestica	MD09G1254500.v1.1 MD17G1246900.v1.1
prunus_persica	Prupe.3G144600_v2.0.a1
pyrus_communis	pycom09g17020 pycom17g24850
rosa_chinensis	RchiOBHm_Chr3g0485241
rosa_laevigata	RLG00000023163
rosa_multiflora	Rmu_sc0005072.1_g000021 Rmu_sc0024791.1_g000001 Rmu_sc0038513.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397150
rosa_rugosa	Rorug03G0217000 Rorug03G0217100
rosa_samantha	Rh3AG266500 Rh3BG302200 Rh3CG300200 Rh3DG296400
rosa_wichuraiana	Rw0G000470 Rw3G023760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	902
AatII	GACGTC	1 cut(s)	181
AccB1I	GGYRCC	1 cut(s)	458
AccB7I	CCANNNNNTGG	1 cut(s)	317
AciI	CCGC	5 cut(s)	155, 601, 1012, 1040, 1108
AclI	AACGTT	1 cut(s)	417
AclWI	GGATC	4 cut(s)	405, 478, 703, 976
AcoI	YGGCCR	2 cut(s)	492, 598
AcsI	RAATTY	1 cut(s)	678
AcyI	GRCGYC	1 cut(s)	178
AdeI	CACNNNGTG	1 cut(s)	578
AfaI	GTAC	2 cut(s)	88, 386
AfiI	CCNNNNNNNGG	3 cut(s)	317, 394, 986
AgsI	TTSAA	3 cut(s)	142, 208, 524
AluBI	AGCT	4 cut(s)	145, 455, 709, 1067
AluI	AGCT	4 cut(s)	145, 455, 709, 1067
Alw21I	GWGCWC	3 cut(s)	379, 739, 1147
AlwI	GGATC	4 cut(s)	405, 478, 703, 976
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	3 cut(s)	120, 492, 598
ApeKI	GCWGC	3 cut(s)	233, 1136, 1157
ApoI	RAATTY	1 cut(s)	678
Asp700I	GAANNNNTTC	1 cut(s)	880
AspLEI	GCGC	1 cut(s)	689
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	1 cut(s)	834
AvaI	CYCGRG	1 cut(s)	359
AvaII	GGWCC	1 cut(s)	49
AxyI	CCTNAGG	1 cut(s)	282
BanI	GGYRCC	1 cut(s)	458
BbsI	GAAGAC	1 cut(s)	1096
Bbv12I	GWGCWC	3 cut(s)	379, 739, 1147
BbvI	GCAGC	3 cut(s)	220, 1148, 1169
BccI	CCATC	3 cut(s)	179, 242, 852
BcgI	CGANNNNNNTGC	2 cut(s)	604, 638
BfaI	CTAG	3 cut(s)	452, 513, 855
BglII	AGATCT	1 cut(s)	663
BisI	GCNGC	7 cut(s)	156, 234, 601, 1012, 1041, 1137, 1158
BlsI	GCNGC	7 cut(s)	157, 235, 602, 1013, 1042, 1138, 1159
Bme18I	GGWCC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	4 cut(s)	50, 166, 337, 460
BmsI	GCATC	2 cut(s)	520, 636
BpiI	GAAGAC	1 cut(s)	1096
BpuEI	CTTGAG	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	172, 730
BsaXI	ACNNNNNCTCC	2 cut(s)	726, 756
Bsc4I	CCNNNNNNNGG	3 cut(s)	317, 394, 986
Bse1I	ACTGG	3 cut(s)	130, 484, 744
Bse21I	CCTNAGG	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	172, 730
BseLI	CCNNNNNNNGG	3 cut(s)	317, 394, 986
BseMII	CTCAG	4 cut(s)	296, 651, 899, 924
BseNI	ACTGG	3 cut(s)	130, 484, 744
BseXI	GCAGC	3 cut(s)	220, 1148, 1169
BseYI	CCCAGC	1 cut(s)	1067
BshFI	GGCC	3 cut(s)	122, 494, 600
BshNI	GGYRCC	1 cut(s)	458
BsiHKAI	GWGCWC	3 cut(s)	379, 739, 1147
BsiHKCI	CYCGRG	1 cut(s)	359
BslFI	GGGAC	1 cut(s)	629
BslI	CCNNNNNNNGG	3 cut(s)	317, 394, 986
BsmFI	GGGAC	1 cut(s)	629
BsnI	GGCC	3 cut(s)	122, 494, 600
BsoBI	CYCGRG	1 cut(s)	359
Bsp1286I	GDGCHC	3 cut(s)	379, 739, 1147
Bsp143I	GATC	8 cut(s)	24, 215, 397, 470, 663, 695, 968, 997
BspACI	CCGC	5 cut(s)	155, 601, 1012, 1040, 1108
BspANI	GGCC	3 cut(s)	122, 494, 600
BspCNI	CTCAG	4 cut(s)	295, 652, 898, 925
BspLI	GGNNCC	4 cut(s)	50, 166, 337, 460
BspPI	GGATC	4 cut(s)	405, 478, 703, 976
BspT107I	GGYRCC	1 cut(s)	458
BsrI	ACTGG	3 cut(s)	130, 484, 744
BssECI	CCNNGG	2 cut(s)	172, 730
BssMI	GATC	8 cut(s)	24, 215, 397, 470, 663, 695, 968, 997
BssNI	GRCGYC	1 cut(s)	178
BssT1I	CCWWGG	2 cut(s)	172, 730
Bst4CI	ACNGT	2 cut(s)	466, 1062
BstACI	GRCGYC	1 cut(s)	178
BstAPI	GCANNNNNTGC	1 cut(s)	1142
BstC8I	GCNNGC	4 cut(s)	6, 613, 988, 1117
BstDEI	CTNAG	4 cut(s)	282, 660, 885, 933
BstENI	CCTNNNNNAGG	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	689
BstKTI	GATC	8 cut(s)	27, 218, 400, 473, 666, 698, 971, 1000
BstMBI	GATC	8 cut(s)	24, 215, 397, 470, 663, 695, 968, 997
BstMWI	GCNNNNNNNGC	7 cut(s)	164, 233, 242, 743, 868, 1116, 1142
BstV1I	GCAGC	3 cut(s)	220, 1148, 1169
BstV2I	GAAGAC	1 cut(s)	1096
BstX2I	RGATCY	5 cut(s)	397, 470, 663, 695, 968
BstYI	RGATCY	5 cut(s)	397, 470, 663, 695, 968
Bsu36I	CCTNAGG	1 cut(s)	282
BsuRI	GGCC	3 cut(s)	122, 494, 600
BtsI	GCAGTG	1 cut(s)	1117
BtsIMutI	CAGTG	4 cut(s)	123, 477, 737, 1117
Cac8I	GCNNGC	4 cut(s)	6, 613, 988, 1117
CfoI	GCGC	1 cut(s)	689
Cfr13I	GGNCC	1 cut(s)	49
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	2 cut(s)	87, 385
CspCI	CAANNNNNGTGG	2 cut(s)	112, 147
CviAII	CATG	3 cut(s)	196, 944, 965
CviQI	GTAC	2 cut(s)	87, 385
DdeI	CTNAG	4 cut(s)	282, 660, 885, 933
DpnI	GATC	8 cut(s)	26, 217, 399, 472, 665, 697, 970, 999
DpnII	GATC	8 cut(s)	24, 215, 397, 470, 663, 695, 968, 997
DraIII	CACNNNGTG	1 cut(s)	578
EaeI	YGGCCR	2 cut(s)	492, 598
Eco130I	CCWWGG	2 cut(s)	172, 730
Eco47I	GGWCC	1 cut(s)	49
Eco81I	CCTNAGG	1 cut(s)	282
Eco88I	CYCGRG	1 cut(s)	359
EcoNI	CCTNNNNNAGG	1 cut(s)	392
EcoT14I	CCWWGG	2 cut(s)	172, 730
EcoT22I	ATGCAT	1 cut(s)	945
ErhI	CCWWGG	2 cut(s)	172, 730
FaeI	CATG	3 cut(s)	199, 947, 968
FaqI	GGGAC	1 cut(s)	629
FatI	CATG	3 cut(s)	195, 943, 964
Fnu4HI	GCNGC	7 cut(s)	156, 234, 601, 1012, 1041, 1137, 1158
Fsp4HI	GCNGC	7 cut(s)	156, 234, 601, 1012, 1041, 1137, 1158
FspBI	CTAG	3 cut(s)	452, 513, 855
GlaI	GCGC	1 cut(s)	688
GluI	GCNGC	7 cut(s)	156, 234, 601, 1012, 1041, 1137, 1158
GsaI	CCCAGC	1 cut(s)	1071
HaeIII	GGCC	3 cut(s)	122, 494, 600
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	1 cut(s)	689
Hin1I	GRCGYC	1 cut(s)	178
Hin1II	CATG	3 cut(s)	199, 947, 968
Hin6I	GCGC	1 cut(s)	687
HinP1I	GCGC	1 cut(s)	687
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	4 cut(s)	100, 262, 621, 726
HphI	GGTGA	1 cut(s)	834
Hpy166II	GTNNAC	2 cut(s)	12, 703
Hpy188I	TCNGA	4 cut(s)	29, 241, 661, 1129
Hpy188III	TCNNGA	3 cut(s)	182, 297, 380
Hpy8I	GTNNAC	2 cut(s)	12, 703
HpyAV	CCTTC	2 cut(s)	64, 388
HpyCH4III	ACNGT	2 cut(s)	466, 1062
HpyCH4IV	ACGT	2 cut(s)	178, 417
HpyCH4V	TGCA	6 cut(s)	4, 422, 533, 800, 943, 1136
HpyF10VI	GCNNNNNNNGC	7 cut(s)	164, 233, 242, 743, 868, 1116, 1142
HpyF3I	CTNAG	4 cut(s)	282, 660, 885, 933
HpySE526I	ACGT	2 cut(s)	178, 417
Hsp92I	GRCGYC	1 cut(s)	178
Hsp92II	CATG	3 cut(s)	199, 947, 968
HspAI	GCGC	1 cut(s)	687
Kzo9I	GATC	8 cut(s)	24, 215, 397, 470, 663, 695, 968, 997
LmnI	GCTCC	6 cut(s)	164, 335, 551, 583, 734, 1154
Lsp1109I	GCAGC	3 cut(s)	220, 1148, 1169
LweI	GCATC	2 cut(s)	520, 636
MaeI	CTAG	3 cut(s)	452, 513, 855
MaeII	ACGT	2 cut(s)	178, 417
MaeIII	GTNAC	1 cut(s)	928
MalI	GATC	8 cut(s)	26, 217, 399, 472, 665, 697, 970, 999
MboI	GATC	8 cut(s)	24, 215, 397, 470, 663, 695, 968, 997
MboII	GAAGA	2 cut(s)	285, 1096
MflI	RGATCY	5 cut(s)	397, 470, 663, 695, 968
MhlI	GDGCHC	3 cut(s)	379, 739, 1147
MluCI	AATT	2 cut(s)	534, 678
MmeI	TCCRAC	3 cut(s)	448, 1081, 1132
MnlI	CCTC	5 cut(s)	282, 291, 774, 820, 928
Mph1103I	ATGCAT	1 cut(s)	945
MroXI	GAANNNNTTC	1 cut(s)	880
MseI	TTAA	3 cut(s)	95, 425, 950
MslI	CAYNNNNRTG	1 cut(s)	559
MwoI	GCNNNNNNNGC	7 cut(s)	164, 233, 242, 743, 868, 1116, 1142
NdeII	GATC	8 cut(s)	24, 215, 397, 470, 663, 695, 968, 997
NlaIII	CATG	3 cut(s)	199, 947, 968
NlaIV	GGNNCC	4 cut(s)	50, 166, 337, 460
NsiI	ATGCAT	1 cut(s)	945
PdmI	GAANNNNTTC	1 cut(s)	880
PfeI	GAWTC	4 cut(s)	100, 262, 621, 726
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	7 cut(s)	157, 235, 602, 1013, 1042, 1138, 1159
PsiI	TTATAA	1 cut(s)	902
Psp1406I	AACGTT	1 cut(s)	417
PspFI	CCCAGC	1 cut(s)	1067
PspN4I	GGNNCC	4 cut(s)	50, 166, 337, 460
PspPI	GGNCC	1 cut(s)	49
PsuI	RGATCY	5 cut(s)	397, 470, 663, 695, 968
RsaI	GTAC	2 cut(s)	88, 386
RsaNI	GTAC	2 cut(s)	87, 385
RseI	CAYNNNNRTG	1 cut(s)	559
SaqAI	TTAA	3 cut(s)	95, 425, 950
SatI	GCNGC	7 cut(s)	156, 234, 601, 1012, 1041, 1137, 1158
Sau3AI	GATC	8 cut(s)	24, 215, 397, 470, 663, 695, 968, 997
Sau96I	GGNCC	1 cut(s)	49
SduI	GDGCHC	3 cut(s)	379, 739, 1147
SfaNI	GCATC	2 cut(s)	520, 636
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	559
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	2 cut(s)	534, 678
SsiI	CCGC	5 cut(s)	155, 601, 1012, 1040, 1108
SspMI	CTAG	3 cut(s)	452, 513, 855
StyI	CCWWGG	2 cut(s)	172, 730
TaaI	ACNGT	2 cut(s)	466, 1062
TaiI	ACGT	2 cut(s)	181, 420
TaqI	TCGA	2 cut(s)	23, 392
TasI	AATT	2 cut(s)	534, 678
TatI	WGTACW	1 cut(s)	86
TauI	GCSGC	4 cut(s)	158, 603, 1014, 1043
TfiI	GAWTC	4 cut(s)	100, 262, 621, 726
Tru1I	TTAA	3 cut(s)	95, 425, 950
Tru9I	TTAA	3 cut(s)	95, 425, 950
TscAI	CASTG	4 cut(s)	130, 484, 744, 1117
TseI	GCWGC	3 cut(s)	233, 1136, 1157
TspGWI	ACGGA	2 cut(s)	759, 930
TspRI	CASTG	4 cut(s)	130, 484, 744, 1117
Van91I	CCANNNNNTGG	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	49
XagI	CCTNNNNNAGG	1 cut(s)	392
XapI	RAATTY	1 cut(s)	678
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1064
XmnI	GAANNNNTTC	1 cut(s)	880
XspI	CTAG	3 cut(s)	452, 513, 855
ZraI	GACGTC	1 cut(s)	179
Zsp2I	ATGCAT	1 cut(s)	945

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.