Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0007158

Physical Location & Seq

Genomic Coordinates Forward (+)

30403882 .. 30409862

Gene Structure 5981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG302200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGCAAGCGTCAACTTATGGTTCGATCAGAGAGAAGTTGGTTTTCGGGGTCCAAGTCAAACAGCAAAGGAAGGTGTTGGGGTTAAAGAATCTGTGTATGACAGATAAGGCCACTGGCTTTGGTGGATTGAAGCTCACTTCCGCGGCTATGGGAGCCAACCTTGGACGTCTTGATGGGATTTCCATGACTTCCTTGAAACCCAGATCAGTCAAGGCTCACGCTGCTTCTGGTGCAGATGGAGACGTTGAGAATCTTGTTCCTCCGAAGCCTCAGGTCAAATCTTCTGGAATAGTGTTGCCATTTGTTGGTGTTGCCTGTCTTGGAGCCATTTTATTTGGTTATCATCTCGGGGTGGTAAATGGTGCCCTTGAGTACCTGTCGAAGGATCTTGGTATTACTGAAAACGTTGCATTAAAAGGGTGGGTGGTTAGCACACTTCTAGCTGGTGCCACAGTTGGATCTTTCACTGGTGGAACATTGGCTGACAAGTTTGGGAGAACTAGAACTTTTCAACTTGATGCAATTCCACTAACGATTGGAGCATTTTTATGTGCCACAGCACAGAGTGTGGAGCAAATGATAGTTGGCCGCTTACTTGCTGGCATTGGAATCGGCATCTCATCGGCTATTGTCCCACTTTACATTTCTGAGATCTCCCCAACTGAAATTCGGGGCGCACTTGGATCTGTAAACCAGCTTTTTATATGTCTTGGAATCCTTGGAGCACTGGTGGCTGGATTACCTTTATCAGCAAATCCGTTATGGTGGAGGACAATGTTTGGTATTGCAATAGTTCCCTCTGTTCTATTGGCTTTAGGAATGGCTGTTTCACCCGAAAGTCCTAGATGGCTCTTACAGCAAGGAAAAACTTCTCAGGCTGAAAAGGTTATAAAAACATTATACGGAAAAGAGAGAGTAACTGAGGTGATGCATGACTTGACATCAACAAGTCATGGATCTGCTGAACCCGAAGCAGGCTGGTTTGATCTGTTTAGTAGCCGCTATTGGAAAGTTGTTAGTGTTGGTGCGGCACTTTTCTTGTTCCAACAGTTAGCTGGGATAAATGCTGTGGTTTATTATTCCACTTCTGTCTTCCGCAGTGCTGGCATAACATCAGATGTTGCAGCAAGTGCTCTCGTTGGAGCAGCAAATGTCTTTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0031967 GO:0031975 GO:0034219 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

387

Amino Acids

40.47

Weight (kDa)

9.3

Isoelectric Point (pI)

27.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	104 - 386	1.6e-71	Sugar (and other) transporter
MFS_1	PF07690	106 - 383	3.1e-22	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16150 AT5G16150 AT5G16150
fragaria_vesca	FvH4_1g25970 FvH4_1g25970 FvH4_1g25970
malus_domestica	MD09G1254500.v1.1 MD17G1246900.v1.1
prunus_persica	Prupe.3G144600_v2.0.a1
pyrus_communis	pycom09g17020 pycom17g24850
rosa_chinensis	RchiOBHm_Chr3g0485241
rosa_laevigata	RLG00000023163
rosa_multiflora	Rmu_sc0005072.1_g000021 Rmu_sc0024791.1_g000001 Rmu_sc0038513.1_g000001
rosa_roxburghii	Rroxscaffold_6G00397150
rosa_rugosa	Rorug03G0217000 Rorug03G0217100
rosa_samantha	Rh3AG266500 Rh3BG302200 Rh3CG300200 Rh3DG296400
rosa_wichuraiana	Rw0G000470 Rw3G023760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	890
AatII	GACGTC	1 cut(s)	169
AccB1I	GGYRCC	2 cut(s)	362, 446
AccB7I	CCANNNNNTGG	1 cut(s)	305
AccII	CGCG	1 cut(s)	143
AciI	CCGC	6 cut(s)	141, 143, 589, 1000, 1028, 1096
AclI	AACGTT	1 cut(s)	405
AclWI	GGATC	4 cut(s)	393, 466, 691, 964
AcoI	YGGCCR	1 cut(s)	586
AcsI	RAATTY	1 cut(s)	666
AcyI	GRCGYC	1 cut(s)	166
AdeI	CACNNNGTG	1 cut(s)	566
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	3 cut(s)	305, 382, 974
AgsI	TTSAA	3 cut(s)	130, 196, 512
AluBI	AGCT	4 cut(s)	133, 443, 697, 1055
AluI	AGCT	4 cut(s)	133, 443, 697, 1055
Alw21I	GWGCWC	2 cut(s)	727, 1135
Alw26I	GTCTC	1 cut(s)	234
AlwI	GGATC	4 cut(s)	393, 466, 691, 964
Ama87I	CYCGRG	1 cut(s)	347
AoxI	GGCC	2 cut(s)	108, 586
ApeKI	GCWGC	3 cut(s)	221, 1124, 1145
ApoI	RAATTY	1 cut(s)	666
Asp700I	GAANNNNTTC	1 cut(s)	868
AspLEI	GCGC	1 cut(s)	677
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	822, 937
AvaI	CYCGRG	1 cut(s)	347
AvaII	GGWCC	1 cut(s)	49
AxyI	CCTNAGG	1 cut(s)	270
BaeGI	GKGCMC	1 cut(s)	367
BanI	GGYRCC	2 cut(s)	362, 446
BbsI	GAAGAC	1 cut(s)	1084
Bbv12I	GWGCWC	2 cut(s)	727, 1135
BbvI	GCAGC	3 cut(s)	208, 1136, 1157
BccI	CCATC	3 cut(s)	167, 230, 840
BcgI	CGANNNNNNTGC	2 cut(s)	592, 626
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	3 cut(s)	440, 501, 843
BglII	AGATCT	1 cut(s)	651
BisI	GCNGC	7 cut(s)	144, 222, 589, 1000, 1029, 1125, 1146
BlsI	GCNGC	7 cut(s)	145, 223, 590, 1001, 1030, 1126, 1147
Bme18I	GGWCC	1 cut(s)	49
BmeT110I	CYCGRG	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	5 cut(s)	50, 154, 325, 364, 448
BmsI	GCATC	3 cut(s)	508, 624, 918
BpiI	GAAGAC	1 cut(s)	1084
BpuEI	CTTGAG	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	166
BsaJI	CCNNGG	3 cut(s)	141, 160, 718
BsaXI	ACNNNNNCTCC	2 cut(s)	714, 744
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 382, 974
Bse1I	ACTGG	3 cut(s)	118, 472, 732
Bse21I	CCTNAGG	1 cut(s)	270
BseDI	CCNNGG	3 cut(s)	141, 160, 718
BseLI	CCNNNNNNNGG	3 cut(s)	305, 382, 974
BseMII	CTCAG	4 cut(s)	284, 639, 887, 912
BseNI	ACTGG	3 cut(s)	118, 472, 732
BseSI	GKGCMC	1 cut(s)	367
BseXI	GCAGC	3 cut(s)	208, 1136, 1157
BseYI	CCCAGC	1 cut(s)	1055
BsgI	GTGCAG	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	2 cut(s)	110, 588
BshNI	GGYRCC	2 cut(s)	362, 446
BsiHKAI	GWGCWC	2 cut(s)	727, 1135
BsiHKCI	CYCGRG	1 cut(s)	347
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	3 cut(s)	305, 382, 974
BsmAI	GTCTC	1 cut(s)	234
BsmBI	CGTCTC	1 cut(s)	234
BsmFI	GGGAC	1 cut(s)	617
BsnI	GGCC	2 cut(s)	110, 588
BsoBI	CYCGRG	1 cut(s)	347
Bsp1286I	GDGCHC	3 cut(s)	367, 727, 1135
Bsp143I	GATC	8 cut(s)	24, 203, 385, 458, 651, 683, 956, 985
BspACI	CCGC	6 cut(s)	141, 143, 589, 1000, 1028, 1096
BspANI	GGCC	2 cut(s)	110, 588
BspCNI	CTCAG	4 cut(s)	283, 640, 886, 913
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	5 cut(s)	50, 154, 325, 364, 448
BspPI	GGATC	4 cut(s)	393, 466, 691, 964
BspT107I	GGYRCC	2 cut(s)	362, 446
BsrI	ACTGG	3 cut(s)	118, 472, 732
BssECI	CCNNGG	3 cut(s)	141, 160, 718
BssMI	GATC	8 cut(s)	24, 203, 385, 458, 651, 683, 956, 985
BssNI	GRCGYC	1 cut(s)	166
BssT1I	CCWWGG	2 cut(s)	160, 718
Bst4CI	ACNGT	2 cut(s)	454, 1050
BstACI	GRCGYC	1 cut(s)	166
BstAPI	GCANNNNNTGC	1 cut(s)	1130
BstC8I	GCNNGC	4 cut(s)	6, 601, 976, 1105
BstDEI	CTNAG	4 cut(s)	270, 648, 873, 921
BstDSI	CCRYGG	1 cut(s)	141
BstENI	CCTNNNNNAGG	1 cut(s)	380
BstFNI	CGCG	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	677
BstKTI	GATC	8 cut(s)	27, 206, 388, 461, 654, 686, 959, 988
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	8 cut(s)	24, 203, 385, 458, 651, 683, 956, 985
BstMWI	GCNNNNNNNGC	7 cut(s)	152, 221, 230, 731, 856, 1104, 1130
BstSLI	GKGCMC	1 cut(s)	367
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	3 cut(s)	208, 1136, 1157
BstV2I	GAAGAC	1 cut(s)	1084
BstX2I	RGATCY	5 cut(s)	385, 458, 651, 683, 956
BstYI	RGATCY	5 cut(s)	385, 458, 651, 683, 956
Bsu36I	CCTNAGG	1 cut(s)	270
BsuRI	GGCC	2 cut(s)	110, 588
BtgI	CCRYGG	1 cut(s)	141
BtsI	GCAGTG	1 cut(s)	1105
BtsIMutI	CAGTG	4 cut(s)	111, 465, 725, 1105
Cac8I	GCNNGC	4 cut(s)	6, 601, 976, 1105
CfoI	GCGC	1 cut(s)	677
Cfr13I	GGNCC	1 cut(s)	49
Cfr42I	CCGCGG	1 cut(s)	144
Csp6I	GTAC	1 cut(s)	373
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	3 cut(s)	184, 932, 953
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	4 cut(s)	270, 648, 873, 921
DpnI	GATC	8 cut(s)	26, 205, 387, 460, 653, 685, 958, 987
DpnII	GATC	8 cut(s)	24, 203, 385, 458, 651, 683, 956, 985
DraIII	CACNNNGTG	1 cut(s)	566
EaeI	YGGCCR	1 cut(s)	586
Eco130I	CCWWGG	2 cut(s)	160, 718
Eco47I	GGWCC	1 cut(s)	49
Eco81I	CCTNAGG	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	347
EcoNI	CCTNNNNNAGG	1 cut(s)	380
EcoT14I	CCWWGG	2 cut(s)	160, 718
EcoT22I	ATGCAT	1 cut(s)	933
ErhI	CCWWGG	2 cut(s)	160, 718
Esp3I	CGTCTC	1 cut(s)	234
FaeI	CATG	3 cut(s)	187, 935, 956
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	3 cut(s)	183, 931, 952
Fnu4HI	GCNGC	7 cut(s)	144, 222, 589, 1000, 1029, 1125, 1146
Fsp4HI	GCNGC	7 cut(s)	144, 222, 589, 1000, 1029, 1125, 1146
FspBI	CTAG	3 cut(s)	440, 501, 843
GlaI	GCGC	1 cut(s)	676
GluI	GCNGC	7 cut(s)	144, 222, 589, 1000, 1029, 1125, 1146
GsaI	CCCAGC	1 cut(s)	1059
HaeIII	GGCC	2 cut(s)	110, 588
HhaI	GCGC	1 cut(s)	677
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	3 cut(s)	187, 935, 956
Hin6I	GCGC	1 cut(s)	675
HinP1I	GCGC	1 cut(s)	675
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	4 cut(s)	88, 250, 609, 714
HphI	GGTGA	2 cut(s)	822, 937
Hpy166II	GTNNAC	2 cut(s)	12, 691
Hpy188I	TCNGA	4 cut(s)	29, 264, 649, 1117
Hpy188III	TCNNGA	2 cut(s)	170, 285
Hpy8I	GTNNAC	2 cut(s)	12, 691
HpyAV	CCTTC	2 cut(s)	64, 376
HpyCH4III	ACNGT	2 cut(s)	454, 1050
HpyCH4IV	ACGT	3 cut(s)	166, 243, 405
HpyCH4V	TGCA	7 cut(s)	4, 233, 410, 521, 788, 931, 1124
HpyF10VI	GCNNNNNNNGC	7 cut(s)	152, 221, 230, 731, 856, 1104, 1130
HpyF3I	CTNAG	4 cut(s)	270, 648, 873, 921
HpySE526I	ACGT	3 cut(s)	166, 243, 405
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	3 cut(s)	187, 935, 956
HspAI	GCGC	1 cut(s)	675
KspI	CCGCGG	1 cut(s)	144
Kzo9I	GATC	8 cut(s)	24, 203, 385, 458, 651, 683, 956, 985
LmnI	GCTCC	6 cut(s)	152, 323, 539, 571, 722, 1142
Lsp1109I	GCAGC	3 cut(s)	208, 1136, 1157
LweI	GCATC	3 cut(s)	508, 624, 918
MaeI	CTAG	3 cut(s)	440, 501, 843
MaeII	ACGT	3 cut(s)	166, 243, 405
MaeIII	GTNAC	1 cut(s)	916
MalI	GATC	8 cut(s)	26, 205, 387, 460, 653, 685, 958, 987
MboI	GATC	8 cut(s)	24, 203, 385, 458, 651, 683, 956, 985
MboII	GAAGA	2 cut(s)	273, 1084
MflI	RGATCY	5 cut(s)	385, 458, 651, 683, 956
MhlI	GDGCHC	3 cut(s)	367, 727, 1135
MluCI	AATT	2 cut(s)	522, 666
MmeI	TCCRAC	3 cut(s)	436, 1069, 1120
MnlI	CCTC	5 cut(s)	270, 279, 762, 808, 916
Mph1103I	ATGCAT	1 cut(s)	933
MroXI	GAANNNNTTC	1 cut(s)	868
MseI	TTAA	2 cut(s)	83, 413
MslI	CAYNNNNRTG	1 cut(s)	547
MspA1I	CMGCKG	1 cut(s)	143
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	7 cut(s)	152, 221, 230, 731, 856, 1104, 1130
NdeII	GATC	8 cut(s)	24, 203, 385, 458, 651, 683, 956, 985
NlaIII	CATG	3 cut(s)	187, 935, 956
NlaIV	GGNNCC	5 cut(s)	50, 154, 325, 364, 448
NsiI	ATGCAT	1 cut(s)	933
PdmI	GAANNNNTTC	1 cut(s)	868
PfeI	GAWTC	4 cut(s)	88, 250, 609, 714
PflMI	CCANNNNNTGG	1 cut(s)	305
PkrI	GCNGC	7 cut(s)	145, 223, 590, 1001, 1030, 1126, 1147
PsiI	TTATAA	1 cut(s)	890
Psp1406I	AACGTT	1 cut(s)	405
PspFI	CCCAGC	1 cut(s)	1055
PspN4I	GGNNCC	5 cut(s)	50, 154, 325, 364, 448
PspPI	GGNCC	1 cut(s)	49
PsuI	RGATCY	5 cut(s)	385, 458, 651, 683, 956
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
RseI	CAYNNNNRTG	1 cut(s)	547
SacII	CCGCGG	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	83, 413
SatI	GCNGC	7 cut(s)	144, 222, 589, 1000, 1029, 1125, 1146
Sau3AI	GATC	8 cut(s)	24, 203, 385, 458, 651, 683, 956, 985
Sau96I	GGNCC	1 cut(s)	49
SduI	GDGCHC	3 cut(s)	367, 727, 1135
SfaNI	GCATC	3 cut(s)	508, 624, 918
Sfr303I	CCGCGG	1 cut(s)	144
SgrBI	CCGCGG	1 cut(s)	144
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	547
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	2 cut(s)	522, 666
SsiI	CCGC	6 cut(s)	141, 143, 589, 1000, 1028, 1096
SspMI	CTAG	3 cut(s)	440, 501, 843
StyI	CCWWGG	2 cut(s)	160, 718
TaaI	ACNGT	2 cut(s)	454, 1050
TaiI	ACGT	3 cut(s)	169, 246, 408
TaqI	TCGA	2 cut(s)	23, 380
TasI	AATT	2 cut(s)	522, 666
TauI	GCSGC	4 cut(s)	146, 591, 1002, 1031
TfiI	GAWTC	4 cut(s)	88, 250, 609, 714
Tru1I	TTAA	2 cut(s)	83, 413
Tru9I	TTAA	2 cut(s)	83, 413
TscAI	CASTG	4 cut(s)	118, 472, 732, 1105
TseI	GCWGC	3 cut(s)	221, 1124, 1145
TspGWI	ACGGA	2 cut(s)	747, 918
TspRI	CASTG	4 cut(s)	118, 472, 732, 1105
Van91I	CCANNNNNTGG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	49
XagI	CCTNNNNNAGG	1 cut(s)	380
XapI	RAATTY	1 cut(s)	666
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1052
XmnI	GAANNNNTTC	1 cut(s)	868
XspI	CTAG	3 cut(s)	440, 501, 843
ZraI	GACGTC	1 cut(s)	167
Zsp2I	ATGCAT	1 cut(s)	933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.