RchiOBHm_Chr3g0492191

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0015743
Physical Location & Seq
Reverse (-)
38935743 .. 38937804
2062 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45508

Sequence Viewer

Length: 690 bp
ATGGAGCCCGACGGCGCAGCGCCTATGCAAGTCGAGTCCGCGGCGGACAAAAGCCCTAACTCGGAGCTCCCTCCCAAATCCAGAGAAGAAGGCGAGCTCTCTTCGGATGATAATGACGAAAATCCTGTTCTCTCGGTTGCACGTTCCACTGGTACTACAGGGCCCATGCTGGTGAACAAATTCACCCATGGGAATCAAGTGGGGAAGGCTGTATCTCCTGCAAGCTCTACTGATATTCAGTGCCAAACCTCCAAGCAACCTACTTCCCAGAAGAGCAATGATGCGAACAGAGTACCAACACCTGGATGGCGTCCTCCACGTGCCCACTCGGGGCCCAACAATAATCTTGTGATAAGCTTCTCAGACGATGACAGTCAGAGTGATTCTGAAGAAAAAGAGCGTGGGAAACTAAAAGCTTTACAAACTAAAAGTAATATGGCTCGAGGGAATGCTAATGGAAAACCACCCATTTCTTCACTTGCAAAACCAAACAAGTTGGGACAGCCTGCCAGAAATGTGAACAAAGTAATGCCCAAAAAGTTGTCTATGAATGGCACATTTATGACATCAATGGCGAATATCCGTGGAGTTAATTCTAGAGATTCTGTGCCTTCATCAGTTGAGCAAGGATCTCGAGCTGGAAATTTCAATTCCGGCAACAAAAATATAGTGAACAGAGAGCGATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

229

Amino Acids

24.44

Weight (kDa)

9.52

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 688
AccB7I CCANNNNNTGG 1 cut(s) 302
AccII CGCG 1 cut(s) 41
AciI CCGC 3 cut(s) 39, 41, 44
AclWI GGATC 1 cut(s) 637
AcsI RAATTY 2 cut(s) 179, 643
AcuI CTGAAG 1 cut(s) 408
AcvI CACGTG 1 cut(s) 320
AcyI GRCGYC 1 cut(s) 310
AfaI GTAC 2 cut(s) 154, 294
AfiI CCNNNNNNNGG 3 cut(s) 61, 302, 330
AgsI TTSAA 1 cut(s) 649
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 6 cut(s) 67, 97, 225, 357, 416, 638
AluI AGCT 6 cut(s) 67, 97, 225, 357, 416, 638
Alw21I GWGCWC 2 cut(s) 69, 99
AlwI GGATC 1 cut(s) 637
Ama87I CYCGRG 3 cut(s) 328, 441, 633
AoxI GGCC 2 cut(s) 161, 332
ApaI GGGCCC 2 cut(s) 165, 336
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 2 cut(s) 179, 643
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 2 cut(s) 17, 22
AspS9I GGNCC 4 cut(s) 161, 162, 332, 333
AsuHPI GGTGA 2 cut(s) 175, 184
AvaI CYCGRG 3 cut(s) 328, 441, 633
BaeGI GKGCMC 3 cut(s) 165, 325, 336
BanII GRGCYC 5 cut(s) 9, 69, 99, 165, 336
BbrPI CACGTG 1 cut(s) 320
Bbv12I GWGCWC 2 cut(s) 69, 99
BbvI GCAGC 1 cut(s) 29
BccI CCATC 1 cut(s) 300
BceAI ACGGC 1 cut(s) 28
BcgI CGANNNNNNTGC 2 cut(s) 614, 648
BciT130I CCWGG 1 cut(s) 303
BfaI CTAG 1 cut(s) 597
BfmI CTRYAG 1 cut(s) 156
BfoI RGCGCY 1 cut(s) 23
BisI GCNGC 2 cut(s) 18, 42
BlsI GCNGC 2 cut(s) 19, 43
Bme1390I CCNGG 1 cut(s) 303
BmeT110I CYCGRG 3 cut(s) 328, 441, 633
BmgT120I GGNCC 4 cut(s) 161, 162, 332, 333
BmiI GGNNCC 4 cut(s) 6, 163, 333, 334
BmrFI CCNGG 1 cut(s) 303
BmsI GCATC 1 cut(s) 271
BsaAI YACGTR 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 310
BsaJI CCNNGG 3 cut(s) 39, 187, 583
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 302, 330
Bse1I ACTGG 1 cut(s) 154
Bse3DI GCAATG 1 cut(s) 283
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 3 cut(s) 39, 187, 583
BseGI GGATG 2 cut(s) 112, 311
BseLI CCNNNNNNNGG 3 cut(s) 61, 302, 330
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 1 cut(s) 154
BseSI GKGCMC 3 cut(s) 165, 325, 336
BseXI GCAGC 1 cut(s) 29
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 2 cut(s) 163, 334
BsiHKAI GWGCWC 2 cut(s) 69, 99
BsiHKCI CYCGRG 3 cut(s) 328, 441, 633
BsiSI CCGG 1 cut(s) 654
BslFI GGGAC 1 cut(s) 513
BslI CCNNNNNNNGG 3 cut(s) 61, 302, 330
BsmFI GGGAC 1 cut(s) 513
BsmI GAATGC 1 cut(s) 454
BsnI GGCC 2 cut(s) 163, 334
BsoBI CYCGRG 3 cut(s) 328, 441, 633
Bsp120I GGGCCC 2 cut(s) 161, 332
Bsp1286I GDGCHC 6 cut(s) 9, 69, 99, 165, 325, 336
Bsp143I GATC 1 cut(s) 629
Bsp19I CCATGG 1 cut(s) 187
BspACI CCGC 3 cut(s) 39, 41, 44
BspANI GGCC 2 cut(s) 163, 334
BspCNI CTCAG 1 cut(s) 374
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 4 cut(s) 6, 163, 333, 334
BspPI GGATC 1 cut(s) 637
BspQI GCTCTTC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 283
BsrI ACTGG 1 cut(s) 154
BssECI CCNNGG 3 cut(s) 39, 187, 583
BssMI GATC 1 cut(s) 629
BssNI GRCGYC 1 cut(s) 310
BssT1I CCWWGG 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 2 cut(s) 106, 266
BstACI GRCGYC 1 cut(s) 310
BstBAI YACGTR 1 cut(s) 320
BstC8I GCNNGC 3 cut(s) 95, 223, 507
BstDEI CTNAG 1 cut(s) 361
BstDSI CCRYGG 3 cut(s) 39, 187, 583
BstF5I GGATG 2 cut(s) 112, 311
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 2 cut(s) 17, 22
BstKTI GATC 1 cut(s) 632
BstMBI GATC 1 cut(s) 629
BstNI CCWGG 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 301
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 3 cut(s) 165, 325, 336
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 629
BstYI RGATCY 1 cut(s) 629
BsuRI GGCC 2 cut(s) 163, 334
BtgI CCRYGG 3 cut(s) 39, 187, 583
BtsCI GGATG 2 cut(s) 112, 311
BtsIMutI CAGTG 2 cut(s) 147, 245
Cac8I GCNNGC 3 cut(s) 95, 223, 507
CfoI GCGC 2 cut(s) 17, 22
Cfr13I GGNCC 4 cut(s) 161, 162, 332, 333
Cfr42I CCGCGG 1 cut(s) 42
CseI GACGC 1 cut(s) 299
Csp6I GTAC 2 cut(s) 153, 293
CviAII CATG 2 cut(s) 166, 188
CviQI GTAC 2 cut(s) 153, 293
DdeI CTNAG 1 cut(s) 361
DpnI GATC 1 cut(s) 631
DpnII GATC 1 cut(s) 629
Eam1104I CTCTTC 2 cut(s) 106, 266
EarI CTCTTC 2 cut(s) 106, 266
EciI GGCGGA 1 cut(s) 59
Ecl136II GAGCTC 2 cut(s) 67, 97
Eco130I CCWWGG 1 cut(s) 187
Eco24I GRGCYC 5 cut(s) 9, 69, 99, 165, 336
Eco53kI GAGCTC 2 cut(s) 67, 97
Eco57I CTGAAG 1 cut(s) 408
Eco72I CACGTG 1 cut(s) 320
Eco88I CYCGRG 3 cut(s) 328, 441, 633
EcoICRI GAGCTC 2 cut(s) 67, 97
EcoO109I RGGNCCY 2 cut(s) 161, 332
EcoRII CCWGG 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 187
EcoT38I GRGCYC 5 cut(s) 9, 69, 99, 165, 336
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 2 cut(s) 169, 191
FaiI YATR 8 cut(s) 26, 167, 189, 437, 548, 563, 668, 688
FaqI GGGAC 1 cut(s) 513
FatI CATG 2 cut(s) 165, 187
Fnu4HI GCNGC 2 cut(s) 18, 42
FokI GGATG 2 cut(s) 119, 318
FriOI GRGCYC 5 cut(s) 9, 69, 99, 165, 336
Fsp4HI GCNGC 2 cut(s) 18, 42
FspBI CTAG 1 cut(s) 597
GlaI GCGC 2 cut(s) 16, 21
GluI GCNGC 2 cut(s) 18, 42
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 2 cut(s) 163, 334
HapII CCGG 1 cut(s) 654
HgaI GACGC 1 cut(s) 299
HhaI GCGC 2 cut(s) 17, 22
Hin1I GRCGYC 1 cut(s) 310
Hin1II CATG 2 cut(s) 169, 191
Hin6I GCGC 2 cut(s) 15, 20
HinP1I GCGC 2 cut(s) 15, 20
HindIII AAGCTT 2 cut(s) 355, 414
HinfI GANTC 4 cut(s) 35, 193, 383, 602
HpaII CCGG 1 cut(s) 654
HphI GGTGA 2 cut(s) 175, 184
Hpy166II GTNNAC 3 cut(s) 175, 520, 673
Hpy188I TCNGA 5 cut(s) 64, 106, 364, 378, 388
Hpy188III TCNNGA 3 cut(s) 81, 597, 633
Hpy8I GTNNAC 3 cut(s) 175, 520, 673
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 3 cut(s) 83, 199, 621
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4IV ACGT 2 cut(s) 142, 319
HpyCH4V TGCA 4 cut(s) 28, 140, 221, 482
HpyF3I CTNAG 1 cut(s) 361
HpySE526I ACGT 2 cut(s) 142, 319
Hsp92I GRCGYC 1 cut(s) 310
Hsp92II CATG 2 cut(s) 169, 191
HspAI GCGC 2 cut(s) 15, 20
KspI CCGCGG 1 cut(s) 42
Kzo9I GATC 1 cut(s) 629
LguI GCTCTTC 1 cut(s) 266
LmnI GCTCC 3 cut(s) 4, 64, 72
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 597
MaeII ACGT 2 cut(s) 142, 319
MalI GATC 1 cut(s) 631
MboI GATC 1 cut(s) 629
MboII GAAGA 5 cut(s) 93, 98, 283, 401, 465
MflI RGATCY 1 cut(s) 629
MhlI GDGCHC 6 cut(s) 9, 69, 99, 165, 325, 336
MluCI AATT 4 cut(s) 179, 592, 643, 649
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 4 cut(s) 81, 259, 324, 437
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 1 cut(s) 591
MslI CAYNNNNRTG 3 cut(s) 170, 304, 560
MspA1I CMGCKG 1 cut(s) 41
MspI CCGG 1 cut(s) 654
MspR9I CCNGG 1 cut(s) 303
MteI GCGCNGCGC 1 cut(s) 18
Mva1269I GAATGC 1 cut(s) 454
MvaI CCWGG 1 cut(s) 303
MvnI CGCG 1 cut(s) 41
NcoI CCATGG 1 cut(s) 187
NdeII GATC 1 cut(s) 629
NlaIII CATG 2 cut(s) 169, 191
NlaIV GGNNCC 4 cut(s) 6, 163, 333, 334
PaeR7I CTCGAG 2 cut(s) 441, 633
PciSI GCTCTTC 1 cut(s) 266
PctI GAATGC 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 3 cut(s) 193, 383, 602
PflMI CCANNNNNTGG 1 cut(s) 302
PkrI GCNGC 2 cut(s) 19, 43
PleI GAGTC 1 cut(s) 43
PmaCI CACGTG 1 cut(s) 320
PmlI CACGTG 1 cut(s) 320
PpsI GAGTC 1 cut(s) 43
Ppu21I YACGTR 1 cut(s) 320
PsiI TTATAA 1 cut(s) 688
Psp124BI GAGCTC 2 cut(s) 69, 99
Psp6I CCWGG 1 cut(s) 301
PspCI CACGTG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 4 cut(s) 6, 163, 333, 334
PspOMI GGGCCC 2 cut(s) 161, 332
PspPI GGNCC 4 cut(s) 161, 162, 332, 333
PspXI VCTCGAGB 1 cut(s) 441
PsuI RGATCY 1 cut(s) 629
RsaI GTAC 2 cut(s) 154, 294
RsaNI GTAC 2 cut(s) 153, 293
RseI CAYNNNNRTG 3 cut(s) 170, 304, 560
SacI GAGCTC 2 cut(s) 69, 99
SacII CCGCGG 1 cut(s) 42
SapI GCTCTTC 1 cut(s) 266
SaqAI TTAA 1 cut(s) 591
SatI GCNGC 2 cut(s) 18, 42
Sau3AI GATC 1 cut(s) 629
Sau96I GGNCC 4 cut(s) 161, 162, 332, 333
SchI GAGTC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 303
SduI GDGCHC 6 cut(s) 9, 69, 99, 165, 325, 336
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 156
Sfr274I CTCGAG 2 cut(s) 441, 633
Sfr303I CCGCGG 1 cut(s) 42
SgrBI CCGCGG 1 cut(s) 42
SlaI CTCGAG 2 cut(s) 441, 633
SmiMI CAYNNNNRTG 3 cut(s) 170, 304, 560
SmlI CTYRAG 2 cut(s) 441, 633
SmoI CTYRAG 2 cut(s) 441, 633
Sse9I AATT 4 cut(s) 179, 592, 643, 649
SsiI CCGC 3 cut(s) 39, 41, 44
SspMI CTAG 1 cut(s) 597
SstI GAGCTC 2 cut(s) 69, 99
StyD4I CCNGG 1 cut(s) 301
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 1 cut(s) 374
TaiI ACGT 2 cut(s) 145, 322
TaqI TCGA 3 cut(s) 33, 442, 634
TasI AATT 4 cut(s) 179, 592, 643, 649
TauI GCSGC 1 cut(s) 44
TfiI GAWTC 3 cut(s) 193, 383, 602
Tru1I TTAA 1 cut(s) 591
Tru9I TTAA 1 cut(s) 591
TscAI CASTG 2 cut(s) 154, 245
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 2 cut(s) 563, 603
TspGWI ACGGA 1 cut(s) 572
TspRI CASTG 2 cut(s) 154, 245
Van91I CCANNNNNTGG 1 cut(s) 302
XapI RAATTY 2 cut(s) 179, 643
XbaI TCTAGA 1 cut(s) 596
XcmI CCANNNNNNNNNTGG 1 cut(s) 303
XhoI CTCGAG 2 cut(s) 441, 633
XmnI GAANNNNTTC 1 cut(s) 179
XspI CTAG 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.