Rh3AG302400

RNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0015743
Physical Location & Seq
Reverse (-)
37288269 .. 37290380
2112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG302400.1

Sequence Viewer

Length: 525 bp
ATGCTGGTGAACAAATTCACCCATGGGAATCAAGTGGGGAAGGCTGTATCTCCTGCAAGCTCTACTGATATTCAGTGCCAAACCTCCAAGCAACCTACTTCCCAGAAGAGCAATGATGCGAACAGAGTACCAACACCTGGATGGCGTCCTCCACGTGCCCACTCGGGGCCCAACAATAATCTTGTGATAAGCTTCTCAGACGATGACAGTCAGAGTGATTCTGAAGAAAAAGAGCGTGGGAAACTAAAAGCTTTACAAACTAAAAGTAATATGGCTCGAGGGAATGCTAATGGAAAACCACCCATTTCTTCACTTGCAAAACCAAACAAGTTGGGACAGCCTGCCAGAAATGTGAACAAAGTAATGCCCAAAAAGTTGTCTATGAATGGCACATTTATGACATCAATGGCGAATATCCGTGGAGTTAATTCTAGAGATTCTGTGCCTTCATCAGTTGAGCAAGGATCTCGAGCTGGAAATTTCAATTCCGGCAACAAAAATATAGTGAACAGAGAGCGATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3H1

Protein Analysis

174

Amino Acids

18.76

Weight (kDa)

10.54

Isoelectric Point (pI)

45.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 523
AccB7I CCANNNNNTGG 1 cut(s) 137
AclWI GGATC 1 cut(s) 472
AcsI RAATTY 2 cut(s) 14, 478
AcuI CTGAAG 1 cut(s) 243
AcvI CACGTG 1 cut(s) 155
AcyI GRCGYC 1 cut(s) 145
AfaI GTAC 1 cut(s) 129
AfiI CCNNNNNNNGG 2 cut(s) 137, 165
AgsI TTSAA 1 cut(s) 484
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 4 cut(s) 60, 192, 251, 473
AluI AGCT 4 cut(s) 60, 192, 251, 473
AlwI GGATC 1 cut(s) 472
Ama87I CYCGRG 3 cut(s) 163, 276, 468
AoxI GGCC 1 cut(s) 167
ApaI GGGCCC 1 cut(s) 171
ApoI RAATTY 2 cut(s) 14, 478
Asp700I GAANNNNTTC 1 cut(s) 14
AspS9I GGNCC 2 cut(s) 167, 168
AsuHPI GGTGA 2 cut(s) 10, 19
AvaI CYCGRG 3 cut(s) 163, 276, 468
BaeGI GKGCMC 2 cut(s) 160, 171
BanII GRGCYC 1 cut(s) 171
BbrPI CACGTG 1 cut(s) 155
BccI CCATC 1 cut(s) 135
BcgI CGANNNNNNTGC 2 cut(s) 449, 483
BciT130I CCWGG 1 cut(s) 138
BfaI CTAG 1 cut(s) 432
Bme1390I CCNGG 1 cut(s) 138
BmeT110I CYCGRG 3 cut(s) 163, 276, 468
BmgT120I GGNCC 2 cut(s) 167, 168
BmiI GGNNCC 2 cut(s) 168, 169
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 106
BsaAI YACGTR 1 cut(s) 155
BsaHI GRCGYC 1 cut(s) 145
BsaJI CCNNGG 2 cut(s) 22, 418
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 165
Bse3DI GCAATG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 22, 418
BseGI GGATG 1 cut(s) 146
BseLI CCNNNNNNNGG 2 cut(s) 137, 165
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 210
BseSI GKGCMC 2 cut(s) 160, 171
BshFI GGCC 1 cut(s) 169
BsiHKCI CYCGRG 3 cut(s) 163, 276, 468
BsiSI CCGG 1 cut(s) 489
BslFI GGGAC 1 cut(s) 348
BslI CCNNNNNNNGG 2 cut(s) 137, 165
BsmFI GGGAC 1 cut(s) 348
BsmI GAATGC 1 cut(s) 289
BsnI GGCC 1 cut(s) 169
BsoBI CYCGRG 3 cut(s) 163, 276, 468
Bsp120I GGGCCC 1 cut(s) 167
Bsp1286I GDGCHC 2 cut(s) 160, 171
Bsp143I GATC 1 cut(s) 464
Bsp19I CCATGG 1 cut(s) 22
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 1 cut(s) 209
BspLI GGNNCC 2 cut(s) 168, 169
BspPI GGATC 1 cut(s) 472
BspQI GCTCTTC 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 118
BssECI CCNNGG 2 cut(s) 22, 418
BssMI GATC 1 cut(s) 464
BssNI GRCGYC 1 cut(s) 145
BssT1I CCWWGG 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 1 cut(s) 101
BstACI GRCGYC 1 cut(s) 145
BstBAI YACGTR 1 cut(s) 155
BstC8I GCNNGC 2 cut(s) 58, 342
BstDEI CTNAG 1 cut(s) 196
BstDSI CCRYGG 2 cut(s) 22, 418
BstF5I GGATG 1 cut(s) 146
BstKTI GATC 1 cut(s) 467
BstMBI GATC 1 cut(s) 464
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 136
BstSLI GKGCMC 2 cut(s) 160, 171
BstX2I RGATCY 1 cut(s) 464
BstYI RGATCY 1 cut(s) 464
BsuRI GGCC 1 cut(s) 169
BtgI CCRYGG 2 cut(s) 22, 418
BtsCI GGATG 1 cut(s) 146
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 2 cut(s) 58, 342
Cfr13I GGNCC 2 cut(s) 167, 168
CseI GACGC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 128
CviAII CATG 1 cut(s) 23
CviJI RGCY 8 cut(s) 44, 60, 169, 192, 251, 275, 340, 473
CviKI_1 RGCY 8 cut(s) 44, 60, 169, 192, 251, 275, 340, 473
CviQI GTAC 1 cut(s) 128
DdeI CTNAG 1 cut(s) 196
DpnI GATC 1 cut(s) 466
DpnII GATC 1 cut(s) 464
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco130I CCWWGG 1 cut(s) 22
Eco24I GRGCYC 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 243
Eco72I CACGTG 1 cut(s) 155
Eco88I CYCGRG 3 cut(s) 163, 276, 468
EcoO109I RGGNCCY 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 22
EcoT38I GRGCYC 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 1 cut(s) 26
FaiI YATR 6 cut(s) 24, 272, 383, 398, 503, 523
FaqI GGGAC 1 cut(s) 348
FatI CATG 1 cut(s) 22
FokI GGATG 1 cut(s) 153
FriOI GRGCYC 1 cut(s) 171
FspBI CTAG 1 cut(s) 432
HaeIII GGCC 1 cut(s) 169
HapII CCGG 1 cut(s) 489
HgaI GACGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 145
Hin1II CATG 1 cut(s) 26
HindIII AAGCTT 2 cut(s) 190, 249
HinfI GANTC 3 cut(s) 28, 218, 437
HpaII CCGG 1 cut(s) 489
HphI GGTGA 2 cut(s) 10, 19
Hpy166II GTNNAC 3 cut(s) 10, 355, 508
Hpy188I TCNGA 3 cut(s) 199, 213, 223
Hpy188III TCNNGA 2 cut(s) 432, 468
Hpy8I GTNNAC 3 cut(s) 10, 355, 508
HpyAV CCTTC 2 cut(s) 34, 456
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 56, 317
HpyF3I CTNAG 1 cut(s) 196
HpySE526I ACGT 1 cut(s) 154
Hsp92I GRCGYC 1 cut(s) 145
Hsp92II CATG 1 cut(s) 26
Kzo9I GATC 1 cut(s) 464
LguI GCTCTTC 1 cut(s) 101
LpnPI CCDG 8 cut(s) 66, 116, 123, 150, 354, 358, 459, 502
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 432
MaeII ACGT 1 cut(s) 154
MalI GATC 1 cut(s) 466
MboI GATC 1 cut(s) 464
MboII GAAGA 3 cut(s) 118, 236, 300
MflI RGATCY 1 cut(s) 464
MhlI GDGCHC 2 cut(s) 160, 171
MluCI AATT 4 cut(s) 14, 427, 478, 484
MnlI CCTC 3 cut(s) 94, 159, 272
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 1 cut(s) 426
MslI CAYNNNNRTG 2 cut(s) 139, 395
MspI CCGG 1 cut(s) 489
MspR9I CCNGG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 289
MvaI CCWGG 1 cut(s) 138
NcoI CCATGG 1 cut(s) 22
NdeII GATC 1 cut(s) 464
NlaIII CATG 1 cut(s) 26
NlaIV GGNNCC 2 cut(s) 168, 169
PaeR7I CTCGAG 2 cut(s) 276, 468
PciSI GCTCTTC 1 cut(s) 101
PctI GAATGC 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 3 cut(s) 28, 218, 437
PflMI CCANNNNNTGG 1 cut(s) 137
PmaCI CACGTG 1 cut(s) 155
PmlI CACGTG 1 cut(s) 155
Ppu21I YACGTR 1 cut(s) 155
PsiI TTATAA 1 cut(s) 523
Psp6I CCWGG 1 cut(s) 136
PspCI CACGTG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 168, 169
PspOMI GGGCCC 1 cut(s) 167
PspPI GGNCC 2 cut(s) 167, 168
PspXI VCTCGAGB 1 cut(s) 276
PsuI RGATCY 1 cut(s) 464
RsaI GTAC 1 cut(s) 129
RsaNI GTAC 1 cut(s) 128
RseI CAYNNNNRTG 2 cut(s) 139, 395
SapI GCTCTTC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 426
Sau3AI GATC 1 cut(s) 464
Sau96I GGNCC 2 cut(s) 167, 168
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 2 cut(s) 160, 171
SetI ASST 8 cut(s) 62, 86, 97, 139, 157, 194, 253, 475
SfaNI GCATC 1 cut(s) 106
Sfr274I CTCGAG 2 cut(s) 276, 468
SlaI CTCGAG 2 cut(s) 276, 468
SmiMI CAYNNNNRTG 2 cut(s) 139, 395
SmlI CTYRAG 2 cut(s) 276, 468
SmoI CTYRAG 2 cut(s) 276, 468
Sse9I AATT 4 cut(s) 14, 427, 478, 484
SspMI CTAG 1 cut(s) 432
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 1 cut(s) 157
TaqI TCGA 2 cut(s) 277, 469
TasI AATT 4 cut(s) 14, 427, 478, 484
TfiI GAWTC 3 cut(s) 28, 218, 437
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
TscAI CASTG 1 cut(s) 80
TspDTI ATGAA 2 cut(s) 398, 438
TspGWI ACGGA 1 cut(s) 407
TspRI CASTG 1 cut(s) 80
Van91I CCANNNNNTGG 1 cut(s) 137
XapI RAATTY 2 cut(s) 14, 478
XbaI TCTAGA 1 cut(s) 431
XcmI CCANNNNNNNNNTGG 1 cut(s) 138
XhoI CTCGAG 2 cut(s) 276, 468
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.